Wall clock time and date at job start Tue Mar 31 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47544 * 239.99944 * 2 1 3 5 5 H 1.07999 * 119.99960 * 240.00248 * 4 2 1 6 6 C 1.37870 * 120.00146 * 59.99430 * 4 2 1 7 7 N 1.31515 * 120.00040 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46992 * 89.99934 * 8 6 4 10 10 H 1.48496 * 109.47270 * 210.00148 * 8 6 4 11 11 H 1.48500 * 109.47065 * 330.00283 * 8 6 4 12 12 C 1.53000 * 109.47107 * 119.99381 * 2 1 3 13 13 O 1.45202 * 109.47467 * 300.00124 * 12 2 1 14 14 C 1.34709 * 116.99855 * 179.97438 * 13 12 2 15 15 O 1.21468 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.47733 * 119.99568 * 179.97438 * 14 13 12 17 17 C 1.39626 * 120.14512 * 179.97438 * 16 14 13 18 18 C 1.37947 * 119.84448 * 179.70064 * 17 16 14 19 19 C 1.38372 * 120.14939 * 0.26453 * 18 17 16 20 20 C 1.50693 * 119.84555 * 179.97438 * 19 18 17 21 21 N 1.46509 * 109.46897 * 90.00262 * 20 19 18 22 22 C 1.34944 * 126.03990 * 124.71633 * 21 20 19 23 23 C 1.35316 * 107.74808 * 179.83947 * 22 21 20 24 24 C 1.39872 * 107.91726 * 0.42060 * 23 22 21 25 25 N 1.30837 * 108.20023 * 359.73535 * 24 23 22 26 26 C 1.38360 * 120.30170 * 0.02562 * 19 18 17 27 27 C 1.37944 * 120.15600 * 0.02562 * 26 19 18 28 28 H 1.09004 * 109.47573 * 300.00351 * 1 2 3 29 29 H 1.09003 * 109.47315 * 60.00620 * 1 2 3 30 30 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47026 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46574 * 299.99834 * 3 2 1 33 33 H 1.08991 * 109.47164 * 59.99579 * 3 2 1 34 34 H 0.97003 * 120.00047 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46964 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46869 * 60.00555 * 12 2 1 37 37 H 1.08002 * 120.08162 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.92426 * 180.27702 * 18 17 16 39 39 H 1.08998 * 109.47515 * 209.99858 * 20 19 18 40 40 H 1.08999 * 109.47649 * 330.00542 * 20 19 18 41 41 H 1.08007 * 126.12761 * 359.97438 * 22 21 20 42 42 H 1.07997 * 126.03773 * 180.15676 * 23 22 21 43 43 H 1.08002 * 125.89470 * 179.72193 * 24 23 22 44 44 H 1.08003 * 119.92647 * 180.02562 * 26 19 18 45 45 H 1.07997 * 120.07994 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4117 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0399 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4349 14 6 1.9175 -0.5487 3.6272 15 8 2.6183 -1.5397 3.6752 16 6 1.4626 0.0956 4.8763 17 6 1.8351 -0.4329 6.1139 18 6 1.4119 0.1773 7.2764 19 6 0.6156 1.3075 7.2180 20 6 0.1567 1.9683 8.4922 21 7 1.1373 2.9778 8.8992 22 6 0.8826 4.2815 9.1373 23 6 2.0478 4.8716 9.4909 24 6 3.0507 3.8972 9.4588 25 7 2.5061 2.7616 9.1043 26 6 0.2379 1.8329 5.9950 27 6 0.6530 1.2321 4.8247 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 0.7094 1.1615 -3.4845 35 1 3.1299 -0.7215 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 2.4567 -1.3148 6.1609 38 1 1.7029 -0.2278 8.2343 39 1 -0.8089 2.4458 8.3266 40 1 0.0611 1.2177 9.2768 41 1 -0.0795 4.7665 9.0615 42 1 2.1807 5.9121 9.7480 43 1 4.0945 4.0551 9.6869 44 1 -0.3834 2.7155 5.9565 45 1 0.3572 1.6430 3.8708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764828966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:06 Heat of formation + Delta-G solvation = 14.018787 kcal Electronic energy + Delta-G solvation = -26754.150377 eV Core-core repulsion = 22931.497984 eV Total energy + Delta-G solvation = -3822.652393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39771 -40.24570 -38.92525 -36.57023 -34.85493 -34.39875 -31.48998 -31.15403 -31.07886 -30.13853 -27.23134 -25.67535 -25.63600 -25.09323 -23.14915 -22.88229 -21.29220 -21.11654 -20.42201 -18.86094 -17.89188 -17.54820 -16.63081 -15.95789 -15.83196 -15.77995 -15.38692 -14.85972 -14.72115 -14.54841 -14.14991 -13.93191 -13.67435 -13.25163 -13.13562 -13.06130 -12.85907 -12.60565 -12.47046 -12.02577 -11.79975 -11.49443 -11.26611 -11.17754 -10.97923 -10.88746 -10.71823 -10.43302 -10.28448 -10.12959 -9.91574 -9.69596 -9.43758 -9.33568 -9.17646 -9.13845 -8.84582 -8.77569 -8.38921 -6.03334 -4.14834 0.49765 1.20709 1.65180 2.21706 2.62741 2.80659 3.13949 3.27224 3.34137 3.38754 3.71391 4.04798 4.29766 4.37732 4.54228 4.66298 4.71203 4.82171 4.90755 5.07961 5.20761 5.23225 5.29577 5.38718 5.50674 5.59446 5.75167 5.81330 6.02490 6.09064 6.09964 6.19259 6.25861 6.39447 6.45453 6.63587 6.71486 6.72429 6.96607 7.01412 7.11677 7.13111 7.38445 7.46169 7.60525 7.68834 8.03476 8.12048 8.21224 8.37784 8.85032 9.50732 10.97949 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002215 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.175753 B =12636.063964 C =13047.555076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.084 3.916 13 O -0.343 6.343 14 C 0.497 3.503 15 O -0.514 6.514 16 C -0.104 4.104 17 C -0.062 4.062 18 C -0.097 4.097 19 C -0.088 4.088 20 C 0.174 3.826 21 N -0.369 5.369 22 C 0.052 3.948 23 C -0.275 4.275 24 C 0.042 3.958 25 N -0.287 5.287 26 C -0.113 4.113 27 C -0.063 4.063 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.084 0.916 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.146 0.854 43 H 0.181 0.819 44 H 0.129 0.871 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 7.025 24.106 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.012 3.988 13 O -0.258 6.258 14 C 0.341 3.659 15 O -0.405 6.405 16 C -0.105 4.105 17 C -0.080 4.080 18 C -0.116 4.116 19 C -0.089 4.089 20 C 0.053 3.947 21 N -0.152 5.152 22 C -0.094 4.094 23 C -0.305 4.305 24 C -0.145 4.145 25 N -0.108 5.108 26 C -0.132 4.132 27 C -0.081 4.081 28 H 0.035 0.965 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.190 0.810 42 H 0.164 0.836 43 H 0.198 0.802 44 H 0.147 0.853 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.641 5.514 23.638 24.544 hybrid contribution 0.317 0.334 -0.794 0.918 sum -3.324 5.848 22.844 23.814 Atomic orbital electron populations 1.21774 0.97312 0.98987 1.00641 1.18249 0.93421 0.93081 0.88231 1.21774 0.98152 0.98167 1.00639 1.20932 1.31969 1.12295 0.89779 0.92478 1.24856 0.94808 0.94905 0.98797 1.69827 1.36388 1.22544 1.23311 0.86532 0.79298 0.79373 0.82445 1.20630 1.21139 1.19893 1.23727 0.98323 0.95854 0.80923 1.86564 1.68995 1.55623 1.14631 1.21145 0.77680 0.81999 0.85059 1.90790 1.35814 1.25483 1.88438 1.19399 1.01865 0.97870 0.91371 1.21285 0.97092 0.99170 0.90459 1.20919 0.96975 0.95292 0.98374 1.19971 0.98843 0.96038 0.94060 1.20627 0.89151 0.90310 0.94586 1.48767 1.06794 1.07151 1.52480 1.22593 1.00767 0.84967 1.01070 1.21523 0.92176 1.01339 1.15426 1.23926 1.00467 0.90546 0.99535 1.77412 0.87989 1.23541 1.21852 1.21000 1.00806 0.99961 0.91436 1.21562 0.93818 0.93266 0.99489 0.96514 0.89695 0.95801 0.95791 0.89692 0.96516 0.92896 0.92406 0.92400 0.84317 0.85050 0.87450 0.88646 0.80991 0.83626 0.80163 0.85318 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.11 37.15 0.30 -2.80 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.13 8.11 37.16 0.30 -2.83 16 4 C -0.51 -13.71 8.01 -34.44 -0.28 -13.98 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -23.93 9.35 55.43 0.52 -23.41 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 12 C 0.08 1.90 4.27 37.16 0.16 2.06 16 13 O -0.34 -6.97 8.13 -40.52 -0.33 -7.30 16 14 C 0.50 9.33 7.90 34.61 0.27 9.61 16 15 O -0.51 -10.76 16.14 -19.24 -0.31 -11.07 16 16 C -0.10 -1.56 5.87 -104.98 -0.62 -2.17 16 17 C -0.06 -0.80 9.60 -39.17 -0.38 -1.18 16 18 C -0.10 -1.03 9.68 -39.64 -0.38 -1.41 16 19 C -0.09 -0.84 5.32 -104.53 -0.56 -1.39 16 20 C 0.17 1.18 6.63 -5.19 -0.03 1.14 16 21 N -0.37 -3.33 3.67 -62.54 -0.23 -3.56 16 22 C 0.05 0.38 11.45 -17.22 -0.20 0.18 16 23 C -0.28 -2.19 10.80 -40.01 -0.43 -2.62 16 24 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 25 N -0.29 -3.25 12.41 30.63 0.38 -2.87 16 26 C -0.11 -1.16 9.68 -39.64 -0.38 -1.54 16 27 C -0.06 -0.82 9.62 -39.17 -0.38 -1.20 16 28 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 33 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.14 1.77 7.65 -52.49 -0.40 1.37 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.11 0.40 8.01 -51.93 -0.42 -0.01 16 40 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.17 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -31.86 381.10 -8.65 -40.51 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.41 Total: 0.70 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.99 Total: -14.59 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.67 Total: -29.85 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.64 Total: -18.37 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.86 -8.65 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764828966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.530 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds