Wall clock time and date at job start Tue Mar 31 2020 14:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47544 * 239.99944 * 2 1 3 5 5 H 1.07999 * 119.99960 * 240.00248 * 4 2 1 6 6 C 1.37870 * 120.00146 * 59.99430 * 4 2 1 7 7 N 1.31515 * 120.00040 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46992 * 89.99934 * 8 6 4 10 10 H 1.48496 * 109.47270 * 210.00148 * 8 6 4 11 11 H 1.48500 * 109.47065 * 330.00283 * 8 6 4 12 12 C 1.53000 * 109.47107 * 119.99381 * 2 1 3 13 13 O 1.45202 * 109.47467 * 300.00124 * 12 2 1 14 14 C 1.34709 * 116.99855 * 179.97438 * 13 12 2 15 15 O 1.21468 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.47733 * 119.99568 * 179.97438 * 14 13 12 17 17 C 1.39626 * 120.14512 * 179.97438 * 16 14 13 18 18 C 1.37947 * 119.84448 * 179.70064 * 17 16 14 19 19 C 1.38372 * 120.14939 * 0.26453 * 18 17 16 20 20 C 1.50693 * 119.84555 * 179.97438 * 19 18 17 21 21 N 1.46509 * 109.46897 * 90.00262 * 20 19 18 22 22 C 1.34944 * 126.03990 * 124.71633 * 21 20 19 23 23 C 1.35316 * 107.74808 * 179.83947 * 22 21 20 24 24 C 1.39872 * 107.91726 * 0.42060 * 23 22 21 25 25 N 1.30837 * 108.20023 * 359.73535 * 24 23 22 26 26 C 1.38360 * 120.30170 * 0.02562 * 19 18 17 27 27 C 1.37944 * 120.15600 * 0.02562 * 26 19 18 28 28 H 1.09004 * 109.47573 * 300.00351 * 1 2 3 29 29 H 1.09003 * 109.47315 * 60.00620 * 1 2 3 30 30 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47026 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46574 * 299.99834 * 3 2 1 33 33 H 1.08991 * 109.47164 * 59.99579 * 3 2 1 34 34 H 0.97003 * 120.00047 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46964 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.46869 * 60.00555 * 12 2 1 37 37 H 1.08002 * 120.08162 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.92426 * 180.27702 * 18 17 16 39 39 H 1.08998 * 109.47515 * 209.99858 * 20 19 18 40 40 H 1.08999 * 109.47649 * 330.00542 * 20 19 18 41 41 H 1.08007 * 126.12761 * 359.97438 * 22 21 20 42 42 H 1.07997 * 126.03773 * 180.15676 * 23 22 21 43 43 H 1.08002 * 125.89470 * 179.72193 * 24 23 22 44 44 H 1.08003 * 119.92647 * 180.02562 * 26 19 18 45 45 H 1.07997 * 120.07994 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3430 -2.1619 -4.4117 10 1 2.4866 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0399 -0.7211 1.2493 13 8 1.5559 -0.0366 2.4349 14 6 1.9175 -0.5487 3.6272 15 8 2.6183 -1.5397 3.6752 16 6 1.4626 0.0956 4.8763 17 6 1.8351 -0.4329 6.1139 18 6 1.4119 0.1773 7.2764 19 6 0.6156 1.3075 7.2180 20 6 0.1567 1.9683 8.4922 21 7 1.1373 2.9778 8.8992 22 6 0.8826 4.2815 9.1373 23 6 2.0478 4.8716 9.4909 24 6 3.0507 3.8972 9.4588 25 7 2.5061 2.7616 9.1043 26 6 0.2379 1.8329 5.9950 27 6 0.6530 1.2321 4.8247 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 0.7094 1.1615 -3.4845 35 1 3.1299 -0.7215 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 2.4567 -1.3148 6.1609 38 1 1.7029 -0.2278 8.2343 39 1 -0.8089 2.4458 8.3266 40 1 0.0611 1.2177 9.2768 41 1 -0.0795 4.7665 9.0615 42 1 2.1807 5.9121 9.7480 43 1 4.0945 4.0551 9.6869 44 1 -0.3834 2.7155 5.9565 45 1 0.3572 1.6430 3.8708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764828966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:05 Heat of formation + Delta-G solvation = -1.435710 kcal Electronic energy + Delta-G solvation = -26754.820534 eV Core-core repulsion = 22931.497984 eV Total energy + Delta-G solvation = -3823.322550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00421 -41.61425 -40.01336 -38.29235 -36.66000 -35.13548 -33.31483 -32.15347 -31.98031 -30.75961 -28.25851 -27.60024 -27.40855 -26.86837 -24.25622 -23.79048 -22.11743 -21.82976 -21.32611 -20.75849 -19.20991 -18.21666 -17.89553 -17.80509 -17.40265 -16.90111 -16.65363 -16.25842 -15.58526 -15.45129 -15.05769 -14.93403 -14.84473 -14.59722 -14.54327 -14.39418 -13.67900 -13.62515 -13.57807 -13.30760 -13.21516 -13.08975 -12.85166 -12.77596 -12.64998 -12.35629 -12.16049 -12.11071 -11.77621 -11.76050 -11.50109 -11.32879 -11.23461 -10.76886 -10.42434 -10.32225 -10.10300 -10.05970 -9.43258 -8.06757 -6.24824 -0.51773 0.30824 1.07080 1.32275 1.41986 1.43415 1.52063 1.68898 1.85989 2.03855 2.43731 2.72979 3.16655 3.40631 3.59054 3.75304 3.89937 3.94351 4.15739 4.21643 4.21947 4.24936 4.25952 4.45097 4.51968 4.55874 4.69187 4.79100 4.80477 4.95263 4.98742 5.01554 5.11900 5.16655 5.19787 5.22801 5.24888 5.34158 5.36841 5.50850 5.61075 5.62492 5.75296 5.80951 6.04993 6.14660 6.22844 6.34537 6.64826 6.79750 6.85562 7.43074 8.93073 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.002215 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.175753 B =12636.063964 C =13047.555076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.119 4.119 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.096 3.904 13 O -0.344 6.344 14 C 0.495 3.505 15 O -0.545 6.545 16 C -0.132 4.132 17 C -0.070 4.070 18 C -0.096 4.096 19 C -0.073 4.073 20 C 0.170 3.830 21 N -0.376 5.376 22 C 0.058 3.942 23 C -0.291 4.291 24 C 0.028 3.972 25 N -0.335 5.335 26 C -0.106 4.106 27 C -0.070 4.070 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.110 0.890 41 H 0.212 0.788 42 H 0.163 0.837 43 H 0.193 0.807 44 H 0.163 0.837 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 8.565 25.991 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.177 4.177 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.022 3.978 13 O -0.260 6.260 14 C 0.342 3.658 15 O -0.438 6.438 16 C -0.134 4.134 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.074 4.074 20 C 0.050 3.950 21 N -0.159 5.159 22 C -0.087 4.087 23 C -0.320 4.320 24 C -0.158 4.158 25 N -0.156 5.156 26 C -0.124 4.124 27 C -0.088 4.088 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.128 0.872 41 H 0.229 0.771 42 H 0.180 0.820 43 H 0.210 0.790 44 H 0.180 0.820 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.164 7.060 25.538 26.995 hybrid contribution 0.760 -0.071 -1.224 1.443 sum -4.403 6.990 24.314 25.679 Atomic orbital electron populations 1.21623 0.96886 0.98665 1.00443 1.18264 0.93775 0.93227 0.88489 1.21628 0.97691 0.97932 1.00401 1.21183 1.32430 1.12508 0.91170 0.93356 1.25504 0.94961 0.95566 1.01134 1.69930 1.36671 1.23166 1.23912 0.85638 0.78670 0.78446 0.79351 1.20188 1.20541 1.19956 1.23332 0.97557 0.95350 0.81523 1.86547 1.69168 1.55516 1.14754 1.21895 0.76869 0.81654 0.85432 1.90761 1.37403 1.26969 1.88674 1.19281 1.04618 0.99619 0.89842 1.21324 0.97442 0.99336 0.90679 1.21158 0.96638 0.95565 0.98040 1.20353 0.96756 0.94918 0.95387 1.20935 0.90052 0.90833 0.93191 1.48904 1.06284 1.08119 1.52599 1.23250 1.02103 0.84210 0.99186 1.21866 0.92218 1.02094 1.15843 1.24329 1.01609 0.90735 0.99121 1.77343 0.89678 1.24820 1.23798 1.21336 1.00279 1.00396 0.90415 1.21615 0.93790 0.92813 1.00621 0.94783 0.91608 0.96142 0.96307 0.91566 0.94896 0.92748 0.93379 0.93126 0.85073 0.83296 0.83440 0.87237 0.77140 0.81964 0.78998 0.81954 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.11 71.98 0.58 -5.13 16 2 C 0.06 3.13 0.58 -52.93 -0.03 3.10 16 3 C -0.12 -5.79 8.11 71.99 0.58 -5.20 16 4 C -0.53 -29.14 8.01 25.60 0.21 -28.93 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 6 C 0.03 1.53 5.15 84.65 0.44 1.96 16 7 N -0.90 -48.99 9.35 21.44 0.20 -48.79 16 8 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.10 4.43 4.27 71.98 0.31 4.74 16 13 O -0.34 -14.28 8.13 -56.19 -0.46 -14.74 16 14 C 0.49 19.18 7.90 70.33 0.56 19.73 16 15 O -0.55 -23.82 16.14 19.94 0.32 -23.49 16 16 C -0.13 -4.00 5.87 -20.10 -0.12 -4.11 16 17 C -0.07 -1.80 9.60 22.54 0.22 -1.58 16 18 C -0.10 -1.86 9.68 22.23 0.22 -1.64 16 19 C -0.07 -1.16 5.32 -19.81 -0.11 -1.27 16 20 C 0.17 1.55 6.63 85.63 0.57 2.12 16 21 N -0.38 -5.49 3.67 -351.79 -1.29 -6.78 16 22 C 0.06 0.63 11.45 83.54 0.96 1.58 16 23 C -0.29 -3.88 10.80 21.99 0.24 -3.64 16 24 C 0.03 0.48 12.03 85.24 1.03 1.50 16 25 N -0.33 -7.01 12.41 -57.02 -0.71 -7.72 16 26 C -0.11 -1.83 9.68 22.23 0.22 -1.61 16 27 C -0.07 -1.74 9.62 22.54 0.22 -1.52 16 28 H 0.03 1.47 7.68 -2.38 -0.02 1.45 16 29 H 0.07 3.43 6.07 -2.39 -0.01 3.42 16 30 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 33 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 34 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.13 3.49 7.65 -2.91 -0.02 3.46 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.15 0.20 8.01 -2.39 -0.02 0.18 16 40 H 0.11 0.75 8.08 -2.39 -0.02 0.73 16 41 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 43 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 44 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 3.54 7.61 -2.91 -0.02 3.52 16 Total: -1.00 -70.53 381.10 7.14 -63.39 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.98 Total: 13.07 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 6.07 Total: -19.91 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -1.80 Total: -63.30 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.14 Total: -38.23 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.53 7.14 -63.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764828966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.954 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds