Wall clock time and date at job start Tue Mar 31 2020 14:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46526 * 2 1 4 4 C 1.50698 * 109.47244 * 240.00699 * 2 1 3 5 5 H 1.08001 * 119.99467 * 240.00231 * 4 2 1 6 6 C 1.37879 * 120.00394 * 59.99052 * 4 2 1 7 7 N 1.31509 * 119.99824 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99811 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47333 * 90.00618 * 8 6 4 10 10 H 1.48508 * 109.46835 * 210.00258 * 8 6 4 11 11 H 1.48497 * 109.47471 * 330.00267 * 8 6 4 12 12 C 1.52997 * 109.47315 * 120.00113 * 2 1 3 13 13 O 1.45201 * 109.46880 * 300.00466 * 12 2 1 14 14 C 1.34234 * 116.99754 * 180.02562 * 13 12 2 15 15 O 1.20822 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99869 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.47196 * 299.99536 * 16 14 13 18 18 C 1.50697 * 109.46978 * 179.97438 * 16 14 13 19 19 C 1.38242 * 120.00241 * 299.72652 * 18 16 14 20 20 C 1.38225 * 119.99817 * 179.81257 * 19 18 16 21 21 C 1.38241 * 120.00549 * 0.39271 * 20 19 18 22 22 C 1.38229 * 119.99385 * 359.85868 * 21 20 19 23 23 C 1.38234 * 120.00711 * 359.95509 * 22 21 20 24 24 N 1.46502 * 109.47048 * 59.99585 * 16 14 13 25 25 C 1.34942 * 126.03991 * 34.97555 * 24 16 14 26 26 C 1.35316 * 107.74613 * 179.75096 * 25 24 16 27 27 C 1.39870 * 107.92161 * 0.39436 * 26 25 24 28 28 N 1.30836 * 108.20019 * 359.59732 * 27 26 25 29 29 H 1.08994 * 109.47123 * 299.99386 * 1 2 3 30 30 H 1.08999 * 109.47021 * 59.99994 * 1 2 3 31 31 H 1.09007 * 109.46714 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46720 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47475 * 299.99727 * 3 2 1 34 34 H 1.09001 * 109.46901 * 60.00119 * 3 2 1 35 35 H 0.97004 * 120.00378 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.47136 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47083 * 60.00008 * 12 2 1 38 38 H 1.08002 * 119.99685 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.99716 * 180.23185 * 20 19 18 40 40 H 1.07995 * 119.99828 * 179.83771 * 21 20 19 41 41 H 1.08006 * 119.99720 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00751 * 179.97438 * 23 22 21 43 43 H 1.08002 * 126.12737 * 359.97438 * 25 24 16 44 44 H 1.07998 * 126.04386 * 180.27449 * 26 25 24 45 45 H 1.08002 * 125.90382 * 179.86983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4347 14 6 1.9171 -0.5466 3.6228 15 8 2.6142 -1.5323 3.6705 16 6 1.4531 0.1105 4.8972 17 1 1.8169 1.1375 4.9298 18 6 1.9919 -0.6516 6.0803 19 6 1.6589 -1.9818 6.2556 20 6 2.1562 -2.6818 7.3388 21 6 2.9801 -2.0495 8.2513 22 6 3.3088 -0.7180 8.0788 23 6 2.8146 -0.0189 6.9935 24 7 -0.0112 0.1096 4.9419 25 6 -0.8195 -0.8591 4.4632 26 6 -2.0978 -0.4856 4.7031 27 6 -2.0700 0.7580 5.3426 28 7 -0.8197 1.1142 5.4893 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 0.7093 1.1619 -3.4844 36 1 3.1300 -0.7208 1.2494 37 1 1.6768 -1.7489 1.2492 38 1 1.0122 -2.4747 5.5448 39 1 1.8991 -3.7220 7.4737 40 1 3.3665 -2.5958 9.0990 41 1 3.9521 -0.2239 8.7919 42 1 3.0711 1.0215 6.8590 43 1 -0.5029 -1.7710 3.9788 44 1 -2.9832 -1.0475 4.4447 45 1 -2.9317 1.3243 5.6641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764842794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:36 Heat of formation + Delta-G solvation = 24.597390 kcal Electronic energy + Delta-G solvation = -28231.731554 eV Core-core repulsion = 24409.537884 eV Total energy + Delta-G solvation = -3822.193670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52232 -40.16220 -39.16683 -36.82492 -34.99574 -34.37656 -31.33335 -31.20818 -30.66915 -29.96730 -27.55287 -25.69282 -25.67153 -25.09497 -22.95430 -22.39694 -21.88637 -20.95805 -20.07488 -18.95911 -18.06534 -17.26027 -16.94379 -16.18155 -15.90939 -15.69808 -15.41337 -14.89184 -14.67738 -14.47486 -14.27704 -13.63014 -13.46447 -13.26924 -13.13653 -12.96425 -12.74788 -12.70480 -12.53554 -11.92413 -11.58293 -11.52409 -11.30095 -11.23028 -11.02515 -10.78911 -10.74634 -10.47718 -10.45030 -10.19926 -10.02207 -9.52620 -9.49941 -9.38169 -9.11016 -9.05795 -8.81922 -8.60288 -8.42352 -6.06489 -4.18879 0.95186 1.23172 1.77460 1.91813 2.67621 2.87792 2.91197 3.24654 3.31864 3.35132 3.68672 4.20620 4.32921 4.46808 4.73139 4.79501 4.81112 4.87486 4.96531 5.04464 5.19954 5.26587 5.38074 5.54758 5.67868 5.76024 5.82223 5.90583 5.96813 6.03986 6.20538 6.27544 6.30182 6.35678 6.60787 6.64404 6.74824 6.84493 6.89749 6.92055 7.07742 7.10132 7.33072 7.56513 7.65115 7.67835 7.88471 7.99687 8.12837 8.32838 8.80859 9.47050 10.94673 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003350 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.189690 B = 8355.366348 C = 9312.720851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.130 4.130 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.083 3.917 13 O -0.335 6.335 14 C 0.448 3.552 15 O -0.488 6.488 16 C 0.218 3.782 17 H 0.139 0.861 18 C -0.099 4.099 19 C -0.071 4.071 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.090 4.090 24 N -0.360 5.360 25 C 0.065 3.935 26 C -0.267 4.267 27 C 0.049 3.951 28 N -0.287 5.287 29 H 0.016 0.984 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.167 0.833 44 H 0.149 0.851 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -2.534 19.628 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.188 4.188 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.250 6.250 14 C 0.287 3.713 15 O -0.374 6.374 16 C 0.114 3.886 17 H 0.156 0.844 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.108 4.108 24 N -0.143 5.143 25 C -0.080 4.080 26 C -0.296 4.296 27 C -0.138 4.138 28 N -0.107 5.107 29 H 0.035 0.965 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.184 0.816 44 H 0.167 0.833 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.356 -1.822 19.830 19.916 hybrid contribution -0.105 -1.273 -1.353 1.860 sum -0.461 -3.095 18.477 18.740 Atomic orbital electron populations 1.21756 0.97150 0.98903 1.00753 1.18252 0.93514 0.93059 0.88028 1.21778 0.98064 0.98170 1.00757 1.20908 1.32209 1.12385 0.89738 0.92494 1.24854 0.94742 0.94870 0.98806 1.69827 1.36173 1.22452 1.23409 0.86533 0.79286 0.79393 0.82442 1.20590 1.21103 1.19885 1.23831 0.98413 0.95854 0.80814 1.86599 1.68263 1.55615 1.14496 1.23053 0.79129 0.82801 0.86324 1.90700 1.34771 1.24078 1.87888 1.19585 0.77027 1.02535 0.89436 0.84372 1.19401 1.00296 0.94749 0.95616 1.20924 0.98008 0.93153 0.96829 1.21107 0.98229 1.00034 0.94708 1.21225 0.97420 0.94933 0.98937 1.21083 1.00537 0.94719 0.97932 1.20983 0.96154 0.99938 0.93774 1.48290 1.04125 1.15614 1.46316 1.22498 0.91285 0.94991 0.99243 1.21453 0.96741 0.99655 1.11738 1.23888 0.94956 0.96006 0.98905 1.77370 1.02211 1.10782 1.20343 0.96507 0.89692 0.95859 0.95798 0.89628 0.96543 0.92817 0.92195 0.92278 0.86350 0.85712 0.85837 0.85585 0.85478 0.81625 0.83305 0.79827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.12 8.11 37.16 0.30 -2.82 16 4 C -0.51 -13.53 8.01 -34.44 -0.28 -13.81 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.08 1.79 4.26 37.16 0.16 1.95 16 13 O -0.33 -6.54 8.88 -39.27 -0.35 -6.89 16 14 C 0.45 7.64 6.36 36.01 0.23 7.87 16 15 O -0.49 -9.04 14.88 -18.75 -0.28 -9.32 16 16 C 0.22 3.12 3.46 -70.23 -0.24 2.87 16 17 H 0.14 1.79 7.88 -51.93 -0.41 1.38 16 18 C -0.10 -1.30 4.59 -104.62 -0.48 -1.78 16 19 C -0.07 -0.90 8.06 -39.58 -0.32 -1.22 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 23 C -0.09 -1.00 9.67 -39.58 -0.38 -1.39 16 24 N -0.36 -5.28 3.44 -57.13 -0.20 -5.48 16 25 C 0.06 0.90 9.53 -17.23 -0.16 0.74 16 26 C -0.27 -3.33 10.80 -40.01 -0.43 -3.76 16 27 C 0.05 0.61 12.03 -17.37 -0.21 0.41 16 28 N -0.29 -4.25 12.58 30.62 0.39 -3.86 16 29 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 34 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 38 H 0.12 1.52 6.95 -52.49 -0.36 1.15 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.13 1.17 7.95 -52.49 -0.42 0.75 16 43 H 0.17 2.14 7.64 -52.49 -0.40 1.74 16 44 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -30.07 375.65 -8.54 -38.61 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.37 Total: 4.04 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.89 Total: -15.08 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.71 Total: -32.59 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.63 Total: -16.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.07 -8.54 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764842794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.206 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds