Wall clock time and date at job start Tue Mar 31 2020 14:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46526 * 2 1 4 4 C 1.50698 * 109.47244 * 240.00699 * 2 1 3 5 5 H 1.08001 * 119.99467 * 240.00231 * 4 2 1 6 6 C 1.37879 * 120.00394 * 59.99052 * 4 2 1 7 7 N 1.31509 * 119.99824 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99811 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47333 * 90.00618 * 8 6 4 10 10 H 1.48508 * 109.46835 * 210.00258 * 8 6 4 11 11 H 1.48497 * 109.47471 * 330.00267 * 8 6 4 12 12 C 1.52997 * 109.47315 * 120.00113 * 2 1 3 13 13 O 1.45201 * 109.46880 * 300.00466 * 12 2 1 14 14 C 1.34234 * 116.99754 * 180.02562 * 13 12 2 15 15 O 1.20822 * 120.00077 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99869 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.47196 * 299.99536 * 16 14 13 18 18 C 1.50697 * 109.46978 * 179.97438 * 16 14 13 19 19 C 1.38242 * 120.00241 * 299.72652 * 18 16 14 20 20 C 1.38225 * 119.99817 * 179.81257 * 19 18 16 21 21 C 1.38241 * 120.00549 * 0.39271 * 20 19 18 22 22 C 1.38229 * 119.99385 * 359.85868 * 21 20 19 23 23 C 1.38234 * 120.00711 * 359.95509 * 22 21 20 24 24 N 1.46502 * 109.47048 * 59.99585 * 16 14 13 25 25 C 1.34942 * 126.03991 * 34.97555 * 24 16 14 26 26 C 1.35316 * 107.74613 * 179.75096 * 25 24 16 27 27 C 1.39870 * 107.92161 * 0.39436 * 26 25 24 28 28 N 1.30836 * 108.20019 * 359.59732 * 27 26 25 29 29 H 1.08994 * 109.47123 * 299.99386 * 1 2 3 30 30 H 1.08999 * 109.47021 * 59.99994 * 1 2 3 31 31 H 1.09007 * 109.46714 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46720 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47475 * 299.99727 * 3 2 1 34 34 H 1.09001 * 109.46901 * 60.00119 * 3 2 1 35 35 H 0.97004 * 120.00378 * 179.97438 * 7 6 4 36 36 H 1.08993 * 109.47136 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47083 * 60.00008 * 12 2 1 38 38 H 1.08002 * 119.99685 * 359.97438 * 19 18 16 39 39 H 1.08001 * 119.99716 * 180.23185 * 20 19 18 40 40 H 1.07995 * 119.99828 * 179.83771 * 21 20 19 41 41 H 1.08006 * 119.99720 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00751 * 179.97438 * 23 22 21 43 43 H 1.08002 * 126.12737 * 359.97438 * 25 24 16 44 44 H 1.07998 * 126.04386 * 180.27449 * 26 25 24 45 45 H 1.08002 * 125.90382 * 179.86983 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0401 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4347 14 6 1.9171 -0.5466 3.6228 15 8 2.6142 -1.5323 3.6705 16 6 1.4531 0.1105 4.8972 17 1 1.8169 1.1375 4.9298 18 6 1.9919 -0.6516 6.0803 19 6 1.6589 -1.9818 6.2556 20 6 2.1562 -2.6818 7.3388 21 6 2.9801 -2.0495 8.2513 22 6 3.3088 -0.7180 8.0788 23 6 2.8146 -0.0189 6.9935 24 7 -0.0112 0.1096 4.9419 25 6 -0.8195 -0.8591 4.4632 26 6 -2.0978 -0.4856 4.7031 27 6 -2.0700 0.7580 5.3426 28 7 -0.8197 1.1142 5.4893 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 0.7093 1.1619 -3.4844 36 1 3.1300 -0.7208 1.2494 37 1 1.6768 -1.7489 1.2492 38 1 1.0122 -2.4747 5.5448 39 1 1.8991 -3.7220 7.4737 40 1 3.3665 -2.5958 9.0990 41 1 3.9521 -0.2239 8.7919 42 1 3.0711 1.0215 6.8590 43 1 -0.5029 -1.7710 3.9788 44 1 -2.9832 -1.0475 4.4447 45 1 -2.9317 1.3243 5.6641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764842794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:34 Heat of formation + Delta-G solvation = 11.032542 kcal Electronic energy + Delta-G solvation = -28232.319770 eV Core-core repulsion = 24409.537884 eV Total energy + Delta-G solvation = -3822.781886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63278 -41.44967 -40.11441 -38.43623 -36.76143 -35.42273 -33.30214 -32.03861 -31.57219 -30.97017 -28.76310 -27.63444 -27.46770 -26.91269 -23.85892 -23.48088 -22.91579 -21.94251 -21.26943 -20.79629 -19.31994 -18.28585 -18.24951 -17.75890 -17.51495 -16.91684 -16.63985 -16.50270 -15.68153 -15.52049 -15.26419 -15.03842 -14.78758 -14.68121 -14.37649 -14.23437 -13.88367 -13.71117 -13.63633 -13.52067 -13.37686 -13.16022 -12.87597 -12.65812 -12.39296 -12.35531 -12.17294 -12.09379 -11.92083 -11.82021 -11.69185 -11.36419 -11.29290 -10.79128 -10.52329 -10.43665 -9.95019 -9.89367 -9.61189 -8.07202 -6.26086 0.06857 0.41732 0.54761 0.86310 1.37044 1.42354 1.45458 1.53619 1.71839 1.94079 2.42456 2.82117 3.16579 3.18377 3.39625 3.55824 3.80114 3.92925 4.05044 4.14015 4.16246 4.19101 4.20717 4.51066 4.52418 4.56386 4.60709 4.75774 4.79280 4.88149 4.98984 5.03352 5.11218 5.12300 5.15943 5.22859 5.41315 5.42766 5.44253 5.51094 5.57981 5.60794 5.69534 5.86177 5.97583 6.01300 6.12406 6.31626 6.45321 6.67026 6.78772 7.42501 8.92582 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003350 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.189690 B = 8355.366348 C = 9312.720851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.064 3.936 3 C -0.119 4.119 4 C -0.534 4.534 5 H 0.052 0.948 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.096 3.904 13 O -0.344 6.344 14 C 0.452 3.548 15 O -0.503 6.503 16 C 0.225 3.775 17 H 0.148 0.852 18 C -0.119 4.119 19 C -0.093 4.093 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.101 4.101 24 N -0.369 5.369 25 C 0.044 3.956 26 C -0.265 4.265 27 C 0.051 3.949 28 N -0.314 5.314 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.302 -2.850 21.306 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.063 3.937 3 C -0.177 4.177 4 C -0.572 4.572 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.023 3.977 13 O -0.259 6.259 14 C 0.293 3.707 15 O -0.390 6.390 16 C 0.121 3.879 17 H 0.165 0.835 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.119 4.119 24 N -0.153 5.153 25 C -0.101 4.101 26 C -0.294 4.294 27 C -0.135 4.135 28 N -0.134 5.134 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.183 0.817 44 H 0.190 0.810 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -0.220 -2.143 21.522 21.630 hybrid contribution -0.179 -1.187 -1.777 2.144 sum -0.398 -3.330 19.746 20.029 Atomic orbital electron populations 1.21571 0.97114 0.98566 0.99873 1.18253 0.93528 0.93109 0.88785 1.21627 0.97861 0.98109 1.00060 1.21176 1.32478 1.12569 0.90963 0.92968 1.25522 0.94903 0.95496 1.01246 1.69945 1.36689 1.23266 1.23919 0.85632 0.78776 0.78396 0.79281 1.20195 1.20796 1.19655 1.23397 0.97866 0.95363 0.81054 1.86580 1.68660 1.55776 1.14892 1.23603 0.78422 0.82473 0.86235 1.90681 1.35499 1.24823 1.88007 1.19560 0.77392 1.02813 0.88106 0.83479 1.19439 1.01693 0.95034 0.95849 1.20998 0.98892 0.93489 0.97770 1.21402 0.98255 1.00961 0.94324 1.21639 0.96296 0.95126 0.99220 1.21490 1.00130 0.94888 0.97694 1.21282 0.95781 1.00946 0.93920 1.48350 1.04134 1.15876 1.46918 1.22740 0.92102 0.95251 0.99964 1.21818 0.96943 0.99781 1.10833 1.24529 0.95198 0.96068 0.97754 1.77332 1.03226 1.11407 1.21462 0.95791 0.91906 0.95865 0.95872 0.91794 0.95564 0.92802 0.92680 0.92536 0.87566 0.83977 0.82776 0.82629 0.83945 0.81671 0.80992 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.48 8.11 71.98 0.58 -4.90 16 2 C 0.06 3.10 0.58 -52.93 -0.03 3.07 16 3 C -0.12 -5.76 8.11 71.98 0.58 -5.18 16 4 C -0.53 -28.31 8.01 25.60 0.21 -28.10 16 5 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 6 C 0.03 1.51 5.15 84.66 0.44 1.94 16 7 N -0.90 -48.98 9.35 21.45 0.20 -48.78 16 8 Si 0.95 42.21 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.10 4.18 4.26 71.98 0.31 4.48 16 13 O -0.34 -13.53 8.88 -51.46 -0.46 -13.99 16 14 C 0.45 15.61 6.36 71.24 0.45 16.06 16 15 O -0.50 -18.95 14.88 21.98 0.33 -18.62 16 16 C 0.22 6.44 3.46 43.50 0.15 6.59 16 17 H 0.15 3.81 7.88 -2.39 -0.02 3.79 16 18 C -0.12 -3.07 4.59 -19.86 -0.09 -3.16 16 19 C -0.09 -2.37 8.06 22.27 0.18 -2.19 16 20 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 21 C -0.10 -1.73 10.05 22.27 0.22 -1.51 16 22 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 23 C -0.10 -2.11 9.67 22.27 0.22 -1.90 16 24 N -0.37 -10.78 3.44 -334.67 -1.15 -11.93 16 25 C 0.04 1.22 9.53 83.54 0.80 2.02 16 26 C -0.26 -6.29 10.80 21.99 0.24 -6.05 16 27 C 0.05 1.19 12.03 85.24 1.03 2.22 16 28 N -0.31 -9.05 12.58 -57.02 -0.72 -9.77 16 29 H 0.02 1.07 7.68 -2.39 -0.02 1.05 16 30 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 31 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 34 H 0.03 1.17 7.68 -2.39 -0.02 1.15 16 35 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 37 H 0.06 2.45 8.13 -2.39 -0.02 2.43 16 38 H 0.11 2.84 6.95 -2.91 -0.02 2.82 16 39 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.14 2.39 7.95 -2.91 -0.02 2.37 16 43 H 0.17 4.42 7.64 -2.91 -0.02 4.40 16 44 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 45 H 0.22 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -64.27 375.65 6.93 -57.34 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.98 Total: 22.42 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.72 Total: -20.90 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.67 Total: -70.48 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.13 Total: -32.61 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -64.27 6.93 -57.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764842794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.372 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds