Wall clock time and date at job start Tue Mar 31 2020 14:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47300 * 2 1 4 4 C 1.50698 * 109.47300 * 239.99780 * 2 1 3 5 5 H 1.08003 * 120.00289 * 240.00115 * 4 2 1 6 6 C 1.37876 * 120.00037 * 59.99998 * 4 2 1 7 7 N 1.31515 * 119.99678 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00343 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47237 * 90.00358 * 8 6 4 10 10 H 1.48501 * 109.47057 * 210.00051 * 8 6 4 11 11 H 1.48496 * 109.47224 * 329.99996 * 8 6 4 12 12 C 1.53008 * 109.47115 * 120.00067 * 2 1 3 13 13 O 1.45206 * 109.46914 * 299.99847 * 12 2 1 14 14 C 1.34230 * 116.99430 * 179.97438 * 13 12 2 15 15 O 1.20821 * 120.00245 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99303 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.47401 * 59.99936 * 16 14 13 18 18 C 1.50703 * 109.47211 * 179.97438 * 16 14 13 19 19 C 1.38235 * 120.00293 * 240.00302 * 18 16 14 20 20 C 1.38230 * 119.99899 * 180.02562 * 19 18 16 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99481 * 60.02182 * 18 16 14 24 24 N 1.46495 * 109.47571 * 300.00193 * 16 14 13 25 25 C 1.34953 * 126.03426 * 324.71757 * 24 16 14 26 26 C 1.35321 * 107.74134 * 179.84037 * 25 24 16 27 27 C 1.39861 * 107.92422 * 0.42290 * 26 25 24 28 28 N 1.30836 * 108.20386 * 359.73610 * 27 26 25 29 29 H 1.09005 * 109.47012 * 299.99821 * 1 2 3 30 30 H 1.08995 * 109.47161 * 60.00256 * 1 2 3 31 31 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47101 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46805 * 299.99962 * 3 2 1 34 34 H 1.09005 * 109.46942 * 60.00136 * 3 2 1 35 35 H 0.97001 * 120.00447 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47068 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47280 * 59.99702 * 12 2 1 38 38 H 1.08001 * 119.99730 * 359.97438 * 19 18 16 39 39 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 41 41 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00441 * 0.02562 * 23 18 16 43 43 H 1.07997 * 126.12630 * 359.97438 * 25 24 16 44 44 H 1.08005 * 126.03505 * 180.16299 * 26 25 24 45 45 H 1.07998 * 125.90394 * 179.72076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7122 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4349 14 6 1.9163 -0.5472 3.6229 15 8 2.6133 -1.5329 3.6706 16 6 1.4523 0.1100 4.8972 17 1 0.3627 0.1102 4.9301 18 6 1.9899 -0.6528 6.0805 19 6 1.1183 -1.2163 6.9936 20 6 1.6115 -1.9154 8.0792 21 6 2.9763 -2.0519 8.2514 22 6 3.8479 -1.4897 7.3375 23 6 3.3547 -0.7886 6.2530 24 7 1.9422 1.4899 4.9415 25 6 3.1278 1.9270 4.4675 26 6 3.1979 3.2588 4.6971 27 6 2.0191 3.6471 5.3417 28 7 1.2655 2.5877 5.4888 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7089 1.1614 -3.4843 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.0520 -1.1095 6.8591 39 1 0.9307 -2.3554 8.7928 40 1 3.3618 -2.5944 9.1020 41 1 4.9142 -1.5959 7.4722 42 1 4.0357 -0.3477 5.5400 43 1 3.8840 1.3226 3.9887 44 1 4.0209 3.9065 4.4332 45 1 1.7732 4.6485 5.6630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764842795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:44 Heat of formation + Delta-G solvation = 24.589178 kcal Electronic energy + Delta-G solvation = -28231.573926 eV Core-core repulsion = 24409.379900 eV Total energy + Delta-G solvation = -3822.194026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52132 -40.16266 -39.16671 -36.82428 -34.99568 -34.37603 -31.33238 -31.20800 -30.66931 -29.96708 -27.55292 -25.69191 -25.67142 -25.09455 -22.95562 -22.39580 -21.88641 -20.95792 -20.07553 -18.95866 -18.06438 -17.25943 -16.94252 -16.18448 -15.90866 -15.69813 -15.41178 -14.89173 -14.67407 -14.47876 -14.27588 -13.63089 -13.46678 -13.26705 -13.13668 -12.96348 -12.74781 -12.70524 -12.53279 -11.92364 -11.58263 -11.52401 -11.30100 -11.23027 -11.02487 -10.78775 -10.74605 -10.47733 -10.45063 -10.19915 -10.02158 -9.52691 -9.49822 -9.38082 -9.11094 -9.05779 -8.81881 -8.60253 -8.42314 -6.06449 -4.18858 0.95188 1.23135 1.77545 1.91638 2.67740 2.87895 2.91225 3.24711 3.31903 3.35079 3.68615 4.20678 4.32937 4.46787 4.73182 4.79506 4.81112 4.87434 4.96540 5.04529 5.19975 5.26562 5.38052 5.54764 5.67849 5.76035 5.82247 5.90628 5.96847 6.04004 6.20506 6.27543 6.30159 6.35677 6.60829 6.64435 6.74804 6.84522 6.89782 6.92106 7.07741 7.10178 7.33130 7.56567 7.65153 7.67842 7.88536 7.99754 8.12883 8.32855 8.80889 9.47075 10.94711 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.003351 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.833576 B = 8354.293620 C = 9312.309371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.072 3.928 3 C -0.128 4.128 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.083 3.917 13 O -0.335 6.335 14 C 0.448 3.552 15 O -0.488 6.488 16 C 0.218 3.782 17 H 0.139 0.861 18 C -0.100 4.100 19 C -0.090 4.090 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.071 4.071 24 N -0.360 5.360 25 C 0.065 3.935 26 C -0.266 4.266 27 C 0.049 3.951 28 N -0.287 5.287 29 H 0.016 0.984 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.084 0.916 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.166 0.834 44 H 0.149 0.851 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 0.513 19.635 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.072 3.928 3 C -0.186 4.186 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.011 3.989 13 O -0.250 6.250 14 C 0.287 3.713 15 O -0.374 6.374 16 C 0.114 3.886 17 H 0.156 0.844 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.143 4.143 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.089 4.089 24 N -0.143 5.143 25 C -0.080 4.080 26 C -0.296 4.296 27 C -0.138 4.138 28 N -0.107 5.107 29 H 0.035 0.965 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.184 0.816 44 H 0.167 0.833 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.851 -0.263 19.834 19.922 hybrid contribution 1.218 -0.341 -1.349 1.849 sum 3.070 -0.604 18.485 18.748 Atomic orbital electron populations 1.21778 0.97288 0.98949 1.00757 1.18252 0.93447 0.93125 0.88025 1.21753 0.97995 0.98053 1.00754 1.20908 1.32219 1.12368 0.89740 0.92494 1.24855 0.94751 0.94864 0.98807 1.69829 1.36178 1.22453 1.23408 0.86531 0.79285 0.79387 0.82441 1.20605 1.21098 1.19880 1.23836 0.98300 0.95964 0.80816 1.86599 1.68593 1.55276 1.14496 1.23049 0.78543 0.83379 0.86325 1.90699 1.33852 1.25009 1.87887 1.19582 1.02374 0.77204 0.89432 0.84370 1.19401 0.94508 1.00548 0.95634 1.20981 0.99465 0.96613 0.93783 1.21082 0.95622 0.99638 0.97933 1.21226 0.93542 0.98814 0.98929 1.21110 0.99989 0.98292 0.94698 1.20927 0.94330 0.96820 0.96822 1.48288 1.13622 1.05939 1.46487 1.22502 0.89727 0.96490 0.99321 1.21454 1.01968 0.94422 1.11718 1.23885 0.93004 0.98026 0.98847 1.77370 1.20267 0.92798 1.20265 0.96542 0.89632 0.95804 0.95852 0.89689 0.96506 0.92818 0.92278 0.92196 0.85478 0.85585 0.85838 0.85710 0.86344 0.81628 0.83302 0.79828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.11 37.16 0.30 -2.83 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.06 8.11 37.16 0.30 -2.76 16 4 C -0.51 -13.53 8.01 -34.44 -0.28 -13.81 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.08 1.79 4.26 37.16 0.16 1.95 16 13 O -0.33 -6.54 8.88 -39.26 -0.35 -6.89 16 14 C 0.45 7.64 6.37 36.00 0.23 7.87 16 15 O -0.49 -9.04 14.86 -18.75 -0.28 -9.32 16 16 C 0.22 3.11 3.46 -70.24 -0.24 2.87 16 17 H 0.14 1.79 7.88 -51.93 -0.41 1.39 16 18 C -0.10 -1.30 4.60 -104.62 -0.48 -1.78 16 19 C -0.09 -1.00 9.67 -39.59 -0.38 -1.39 16 20 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 21 C -0.11 -1.02 10.05 -39.58 -0.40 -1.42 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.07 -0.90 8.05 -39.58 -0.32 -1.22 16 24 N -0.36 -5.28 3.45 -57.13 -0.20 -5.48 16 25 C 0.06 0.90 9.54 -17.22 -0.16 0.73 16 26 C -0.27 -3.32 10.80 -40.01 -0.43 -3.76 16 27 C 0.05 0.61 12.02 -17.37 -0.21 0.40 16 28 N -0.29 -4.25 12.58 30.62 0.39 -3.86 16 29 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 34 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 37 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.13 1.17 7.95 -52.49 -0.42 0.75 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.52 6.93 -52.49 -0.36 1.15 16 43 H 0.17 2.14 7.63 -52.49 -0.40 1.74 16 44 H 0.15 1.50 8.06 -52.48 -0.42 1.07 16 45 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 375.62 15.07 5.66 5.66 Total: -1.00 -30.08 375.62 -8.54 -38.61 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.36 Total: 4.04 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -2.89 Total: -15.08 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.71 Total: -32.60 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.63 Total: -16.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.08 -8.54 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764842795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.201 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds