Wall clock time and date at job start Tue Mar 31 2020 14:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47300 * 2 1 4 4 C 1.50698 * 109.47300 * 239.99780 * 2 1 3 5 5 H 1.08003 * 120.00289 * 240.00115 * 4 2 1 6 6 C 1.37876 * 120.00037 * 59.99998 * 4 2 1 7 7 N 1.31515 * 119.99678 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00343 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47237 * 90.00358 * 8 6 4 10 10 H 1.48501 * 109.47057 * 210.00051 * 8 6 4 11 11 H 1.48496 * 109.47224 * 329.99996 * 8 6 4 12 12 C 1.53008 * 109.47115 * 120.00067 * 2 1 3 13 13 O 1.45206 * 109.46914 * 299.99847 * 12 2 1 14 14 C 1.34230 * 116.99430 * 179.97438 * 13 12 2 15 15 O 1.20821 * 120.00245 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99303 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.47401 * 59.99936 * 16 14 13 18 18 C 1.50703 * 109.47211 * 179.97438 * 16 14 13 19 19 C 1.38235 * 120.00293 * 240.00302 * 18 16 14 20 20 C 1.38230 * 119.99899 * 180.02562 * 19 18 16 21 21 C 1.38235 * 120.00326 * 359.95697 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99481 * 60.02182 * 18 16 14 24 24 N 1.46495 * 109.47571 * 300.00193 * 16 14 13 25 25 C 1.34953 * 126.03426 * 324.71757 * 24 16 14 26 26 C 1.35321 * 107.74134 * 179.84037 * 25 24 16 27 27 C 1.39861 * 107.92422 * 0.42290 * 26 25 24 28 28 N 1.30836 * 108.20386 * 359.73610 * 27 26 25 29 29 H 1.09005 * 109.47012 * 299.99821 * 1 2 3 30 30 H 1.08995 * 109.47161 * 60.00256 * 1 2 3 31 31 H 1.09004 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47101 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.46805 * 299.99962 * 3 2 1 34 34 H 1.09005 * 109.46942 * 60.00136 * 3 2 1 35 35 H 0.97001 * 120.00447 * 180.02562 * 7 6 4 36 36 H 1.08999 * 109.47068 * 180.02562 * 12 2 1 37 37 H 1.08996 * 109.47280 * 59.99702 * 12 2 1 38 38 H 1.08001 * 119.99730 * 359.97438 * 19 18 16 39 39 H 1.08000 * 120.00376 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00616 * 179.72578 * 21 20 19 41 41 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00441 * 0.02562 * 23 18 16 43 43 H 1.07997 * 126.12630 * 359.97438 * 25 24 16 44 44 H 1.08005 * 126.03505 * 180.16299 * 26 25 24 45 45 H 1.07998 * 125.90394 * 179.72076 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6293 -1.7584 -3.7122 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4349 14 6 1.9163 -0.5472 3.6229 15 8 2.6133 -1.5329 3.6706 16 6 1.4523 0.1100 4.8972 17 1 0.3627 0.1102 4.9301 18 6 1.9899 -0.6528 6.0805 19 6 1.1183 -1.2163 6.9936 20 6 1.6115 -1.9154 8.0792 21 6 2.9763 -2.0519 8.2514 22 6 3.8479 -1.4897 7.3375 23 6 3.3547 -0.7886 6.2530 24 7 1.9422 1.4899 4.9415 25 6 3.1278 1.9270 4.4675 26 6 3.1979 3.2588 4.6971 27 6 2.0191 3.6471 5.3417 28 7 1.2655 2.5877 5.4888 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7089 1.1614 -3.4843 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.0520 -1.1095 6.8591 39 1 0.9307 -2.3554 8.7928 40 1 3.3618 -2.5944 9.1020 41 1 4.9142 -1.5959 7.4722 42 1 4.0357 -0.3477 5.5400 43 1 3.8840 1.3226 3.9887 44 1 4.0209 3.9065 4.4332 45 1 1.7732 4.6485 5.6630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764842795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:42 Heat of formation + Delta-G solvation = 11.018301 kcal Electronic energy + Delta-G solvation = -28232.162404 eV Core-core repulsion = 24409.379900 eV Total energy + Delta-G solvation = -3822.782504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.63200 -41.44976 -40.11460 -38.43567 -36.76157 -35.42223 -33.30145 -32.03823 -31.57228 -30.97015 -28.76323 -27.63478 -27.46746 -26.91213 -23.85980 -23.47937 -22.91670 -21.94244 -21.26966 -20.79627 -19.31909 -18.28537 -18.24836 -17.75863 -17.51654 -16.91699 -16.64097 -16.49969 -15.68175 -15.52097 -15.26516 -15.03783 -14.78651 -14.68086 -14.37657 -14.23822 -13.88167 -13.71062 -13.63568 -13.51915 -13.37646 -13.15968 -12.87708 -12.65665 -12.39345 -12.35613 -12.17199 -12.09420 -11.91935 -11.82016 -11.69226 -11.36471 -11.29234 -10.79106 -10.52273 -10.43688 -9.95110 -9.89312 -9.61186 -8.07185 -6.26088 0.06888 0.41708 0.54779 0.86224 1.37131 1.42342 1.45484 1.53629 1.71886 1.94118 2.42470 2.82080 3.16580 3.18494 3.39518 3.55870 3.80181 3.92888 4.05078 4.14062 4.16246 4.19122 4.20714 4.51053 4.52392 4.56354 4.60709 4.75767 4.79301 4.88147 4.98993 5.03358 5.11211 5.12277 5.15927 5.22890 5.41317 5.42787 5.44251 5.51095 5.57996 5.60808 5.69550 5.86194 5.97577 6.01330 6.12422 6.31623 6.45364 6.67023 6.78783 7.42504 8.92600 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.003351 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.833576 B = 8354.293620 C = 9312.309371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.064 3.936 3 C -0.113 4.113 4 C -0.534 4.534 5 H 0.052 0.948 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.096 3.904 13 O -0.344 6.344 14 C 0.452 3.548 15 O -0.503 6.503 16 C 0.225 3.775 17 H 0.148 0.852 18 C -0.119 4.119 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.105 4.105 22 C -0.132 4.132 23 C -0.093 4.093 24 N -0.369 5.369 25 C 0.044 3.956 26 C -0.265 4.265 27 C 0.051 3.949 28 N -0.314 5.314 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.262 0.738 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.143 0.857 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 0.271 21.313 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.171 4.171 4 C -0.572 4.572 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.023 3.977 13 O -0.259 6.259 14 C 0.293 3.707 15 O -0.390 6.390 16 C 0.121 3.879 17 H 0.165 0.835 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.150 4.150 23 C -0.111 4.111 24 N -0.153 5.153 25 C -0.101 4.101 26 C -0.294 4.294 27 C -0.135 4.135 28 N -0.134 5.134 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.124 0.876 43 H 0.183 0.817 44 H 0.190 0.810 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.099 -0.507 21.527 21.635 hybrid contribution 1.164 -0.242 -1.773 2.135 sum 3.263 -0.748 19.754 20.035 Atomic orbital electron populations 1.21627 0.97345 0.98626 1.00060 1.18253 0.93415 0.93222 0.88783 1.21568 0.97803 0.97876 0.99872 1.21176 1.32487 1.12553 0.90964 0.92964 1.25523 0.94912 0.95491 1.01247 1.69946 1.36691 1.23270 1.23918 0.85631 0.78779 0.78379 0.79289 1.20295 1.20756 1.19596 1.23402 0.97891 0.95335 0.81055 1.86581 1.68988 1.55443 1.14894 1.23599 0.77788 0.83103 0.86236 1.90681 1.34491 1.25836 1.88006 1.19556 1.02776 0.77446 0.88103 0.83477 1.19438 0.95018 1.01713 0.95866 1.21279 1.00173 0.96541 0.93929 1.21489 0.96356 0.98663 0.97695 1.21640 0.93455 0.97960 0.99222 1.21405 1.01340 0.97893 0.94313 1.21000 0.94287 0.98089 0.97759 1.48348 1.13856 1.05977 1.47094 1.22745 0.89879 0.97409 1.00033 1.21819 1.02630 0.94090 1.10830 1.24525 0.92436 0.98889 0.97698 1.77332 1.21302 0.93404 1.21384 0.95562 0.91797 0.95881 0.95854 0.91902 0.95795 0.92803 0.92559 0.92656 0.83945 0.82629 0.82775 0.83977 0.87566 0.81663 0.80993 0.76426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.11 71.98 0.58 -5.18 16 2 C 0.06 3.10 0.58 -52.93 -0.03 3.07 16 3 C -0.11 -5.48 8.11 71.98 0.58 -4.90 16 4 C -0.53 -28.31 8.01 25.60 0.21 -28.10 16 5 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -48.99 9.35 21.45 0.20 -48.79 16 8 Si 0.95 42.22 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 C 0.10 4.18 4.26 71.98 0.31 4.48 16 13 O -0.34 -13.54 8.88 -51.41 -0.46 -14.00 16 14 C 0.45 15.62 6.37 71.23 0.45 16.07 16 15 O -0.50 -18.94 14.86 21.98 0.33 -18.62 16 16 C 0.22 6.44 3.46 43.50 0.15 6.59 16 17 H 0.15 3.81 7.88 -2.38 -0.02 3.79 16 18 C -0.12 -3.07 4.60 -19.87 -0.09 -3.17 16 19 C -0.10 -2.11 9.67 22.27 0.22 -1.89 16 20 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 21 C -0.10 -1.73 10.05 22.27 0.22 -1.51 16 22 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.09 -2.36 8.05 22.27 0.18 -2.18 16 24 N -0.37 -10.78 3.45 -334.66 -1.15 -11.94 16 25 C 0.04 1.22 9.54 83.54 0.80 2.01 16 26 C -0.26 -6.29 10.80 21.99 0.24 -6.05 16 27 C 0.05 1.19 12.02 85.23 1.02 2.21 16 28 N -0.31 -9.05 12.58 -57.03 -0.72 -9.77 16 29 H 0.03 1.17 7.68 -2.38 -0.02 1.15 16 30 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 34 H 0.02 1.07 7.68 -2.38 -0.02 1.05 16 35 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 36 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 37 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 38 H 0.14 2.39 7.95 -2.91 -0.02 2.37 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.11 2.84 6.93 -2.91 -0.02 2.82 16 43 H 0.17 4.42 7.63 -2.91 -0.02 4.40 16 44 H 0.17 3.13 8.06 -2.91 -0.02 3.10 16 45 H 0.22 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -64.28 375.62 6.93 -57.35 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.98 Total: 22.42 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.72 Total: -20.91 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.67 Total: -70.49 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.13 Total: -32.61 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -64.28 6.93 -57.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764842795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.366 kcal (2) G-P(sol) polarization free energy of solvation -64.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds