Wall clock time and date at job start Tue Mar 31 2020 14:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.50707 * 109.47302 * 240.00421 * 2 1 3 5 5 H 1.07996 * 119.99785 * 240.00456 * 4 2 1 6 6 C 1.37871 * 119.99946 * 59.99263 * 4 2 1 7 7 N 1.31519 * 120.00516 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47084 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46758 * 120.00354 * 8 6 4 11 11 H 1.48497 * 109.47351 * 240.00057 * 8 6 4 12 12 C 1.52997 * 109.47167 * 119.99964 * 2 1 3 13 13 O 1.45194 * 109.47084 * 302.41206 * 12 2 1 14 14 C 1.34898 * 116.99904 * 175.51549 * 13 12 2 15 15 O 1.21627 * 119.99589 * 6.00621 * 14 13 12 16 16 C 1.46485 * 120.00221 * 186.00535 * 14 13 12 17 17 C 1.38002 * 126.26523 * 5.19699 * 16 14 13 18 18 C 1.39787 * 106.96973 * 180.16173 * 17 16 14 19 19 C 1.35485 * 107.84872 * 359.61735 * 18 17 16 20 20 N 1.34959 * 108.97978 * 0.24008 * 19 18 17 21 21 C 1.46503 * 125.63854 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.47163 * 266.23109 * 21 20 19 23 23 C 1.38654 * 120.78546 * 263.67987 * 22 21 20 24 24 C 1.38207 * 119.15830 * 179.79770 * 23 22 21 25 25 N 1.31872 * 120.76545 * 0.49166 * 24 23 22 26 26 C 1.31868 * 121.72476 * 359.73743 * 25 24 23 27 27 C 1.38211 * 120.76562 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47485 * 301.95961 * 1 2 3 29 29 H 1.09003 * 109.47450 * 61.96088 * 1 2 3 30 30 H 1.08998 * 109.47215 * 181.95928 * 1 2 3 31 31 H 1.08994 * 109.47249 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47075 * 300.00008 * 3 2 1 33 33 H 1.08999 * 109.47174 * 60.00232 * 3 2 1 34 34 H 0.96994 * 120.00509 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46701 * 182.41348 * 12 2 1 36 36 H 1.08999 * 109.47377 * 62.41879 * 12 2 1 37 37 H 1.08004 * 126.51368 * 0.04735 * 17 16 14 38 38 H 1.08001 * 126.07920 * 179.87383 * 18 17 16 39 39 H 1.07992 * 125.51599 * 180.21669 * 19 18 17 40 40 H 1.09007 * 109.46692 * 26.22956 * 21 20 19 41 41 H 1.09001 * 109.47314 * 146.22356 * 21 20 19 42 42 H 1.07992 * 120.42149 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.61538 * 180.20538 * 24 23 22 44 44 H 1.08004 * 119.61846 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.41465 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 6 2.0400 -0.7212 1.2492 13 8 1.5095 -0.0708 2.4340 14 6 1.7894 -0.6423 3.6235 15 8 2.5475 -1.5918 3.6786 16 6 1.1804 -0.1192 4.8488 17 6 0.2317 0.8799 4.9266 18 6 -0.0611 1.0599 6.2816 19 6 0.6902 0.1819 6.9889 20 7 1.4462 -0.5378 6.1334 21 6 2.3936 -1.5901 6.5093 22 6 3.7725 -0.9984 6.6486 23 6 4.6793 -1.0575 5.6013 24 6 5.9334 -0.5002 5.7641 25 7 6.2740 0.0737 6.9015 26 6 5.4393 0.1441 7.9199 27 6 4.1666 -0.3870 7.8289 28 1 -0.3634 0.5440 0.8719 29 1 -0.3634 0.4831 -0.9070 30 1 -0.3633 -1.0270 0.0351 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7093 1.1618 -3.4844 35 1 3.1292 -0.6838 1.2710 36 1 1.7125 -1.7606 1.2278 37 1 -0.2009 1.4213 4.0982 38 1 -0.7646 1.7695 6.6915 39 1 0.6853 0.0754 8.0636 40 1 2.0895 -2.0304 7.4590 41 1 2.4050 -2.3609 5.7387 42 1 4.4077 -1.5299 4.6689 43 1 6.6443 -0.5392 4.9520 44 1 5.7538 0.6224 8.8358 45 1 3.4877 -0.3265 8.6666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764844013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:19 Heat of formation + Delta-G solvation = -2.108218 kcal Electronic energy + Delta-G solvation = -27871.328100 eV Core-core repulsion = 24047.976387 eV Total energy + Delta-G solvation = -3823.351712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64680 -40.17091 -39.44930 -36.54781 -35.04130 -34.57975 -31.46507 -31.41169 -31.27067 -29.63864 -26.85698 -25.80843 -25.61549 -25.13653 -23.69318 -22.95392 -22.41244 -20.72678 -19.58595 -18.85828 -17.96555 -17.00171 -16.60701 -16.45383 -15.88838 -15.79763 -15.77029 -15.28409 -14.67115 -14.62102 -14.08171 -13.98490 -13.61808 -13.42135 -13.12054 -13.02666 -12.76335 -12.57173 -12.38028 -12.27452 -11.85656 -11.60931 -11.46393 -11.20109 -10.99165 -10.68868 -10.42205 -10.28616 -10.13580 -10.01271 -9.92274 -9.72215 -9.43242 -9.34650 -9.33560 -8.86261 -8.76346 -8.38830 -8.33345 -6.03004 -4.14966 0.83620 0.94865 1.34799 2.47918 2.64549 3.25980 3.30635 3.34538 3.36468 3.41355 3.69194 4.22245 4.28140 4.29366 4.37618 4.76555 4.79198 4.82844 4.98692 5.12902 5.21305 5.23417 5.34787 5.40957 5.43334 5.63123 5.72669 6.02088 6.04722 6.07504 6.10239 6.14615 6.44095 6.48489 6.68697 6.73808 6.85597 6.97870 7.01117 7.07457 7.15035 7.15802 7.40003 7.61784 7.69150 7.75115 8.05208 8.13248 8.22346 8.38268 8.85171 9.50765 10.98084 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003141 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.869361 B = 8913.223178 C =10038.633518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.088 3.912 13 O -0.334 6.334 14 C 0.534 3.466 15 O -0.533 6.533 16 C -0.041 4.041 17 C -0.103 4.103 18 C -0.213 4.213 19 C 0.022 3.978 20 N -0.405 5.405 21 C 0.137 3.863 22 C -0.069 4.069 23 C -0.143 4.143 24 C 0.096 3.904 25 N -0.480 5.480 26 C 0.091 3.909 27 C -0.157 4.157 28 H 0.018 0.982 29 H 0.085 0.915 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.238 -1.520 21.727 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.015 3.985 13 O -0.248 6.248 14 C 0.380 3.620 15 O -0.426 6.426 16 C -0.151 4.151 17 C -0.129 4.129 18 C -0.237 4.237 19 C -0.113 4.113 20 N -0.080 5.080 21 C 0.016 3.984 22 C -0.078 4.078 23 C -0.163 4.163 24 C -0.060 4.060 25 N -0.189 5.189 26 C -0.066 4.066 27 C -0.177 4.177 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.477 -1.599 21.664 21.864 hybrid contribution -0.426 -0.921 -0.892 1.351 sum 2.050 -2.521 20.773 21.025 Atomic orbital electron populations 1.21766 0.97250 0.98684 1.01058 1.18255 0.93510 0.93070 0.88129 1.21780 0.98074 0.98163 1.00740 1.20964 1.31945 1.12294 0.89771 0.92460 1.24853 0.94793 0.94908 0.98784 1.69835 1.36320 1.22557 1.23227 0.86494 0.78659 0.79698 0.82900 1.19779 1.20960 1.20940 1.23740 0.97620 0.96383 0.80764 1.86618 1.70561 1.53276 1.14385 1.19657 0.78081 0.80159 0.84070 1.90694 1.35730 1.28226 1.87984 1.19114 1.07221 1.05285 0.83468 1.21630 0.97046 0.96642 0.97596 1.20895 1.05570 1.03970 0.93298 1.21875 0.97024 0.96487 0.95907 1.43710 1.30868 1.28535 1.04885 1.20963 0.84233 0.89156 1.04009 1.20343 0.95461 0.97818 0.94185 1.22602 0.94194 0.99193 1.00279 1.22880 0.95038 0.93181 0.94945 1.67673 1.36093 1.14687 1.00464 1.22726 0.89968 0.96539 0.97356 1.22019 0.98160 0.99401 0.98118 0.96305 0.89661 0.95947 0.95838 0.89709 0.96418 0.92926 0.92469 0.92423 0.82858 0.83801 0.81453 0.87926 0.86176 0.82740 0.82394 0.82717 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.08 37.16 0.30 -2.80 16 2 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 3 C -0.13 -3.12 8.13 37.16 0.30 -2.82 16 4 C -0.51 -13.52 8.01 -34.44 -0.28 -13.80 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.81 5.14 -17.82 -0.09 1.72 16 7 N -0.88 -23.80 9.34 55.43 0.52 -23.29 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.09 1.91 4.29 37.16 0.16 2.06 16 13 O -0.33 -6.69 8.74 -41.04 -0.36 -7.05 16 14 C 0.53 9.56 7.91 34.05 0.27 9.83 16 15 O -0.53 -9.68 11.84 -19.36 -0.23 -9.91 16 16 C -0.04 -0.63 6.88 -81.99 -0.56 -1.19 16 17 C -0.10 -1.43 10.70 -39.09 -0.42 -1.85 16 18 C -0.21 -2.33 10.81 -39.99 -0.43 -2.77 16 19 C 0.02 0.22 11.34 -17.16 -0.19 0.02 16 20 N -0.41 -4.87 2.73 -114.32 -0.31 -5.18 16 21 C 0.14 1.40 5.71 -5.19 -0.03 1.37 16 22 C -0.07 -0.77 5.50 -104.32 -0.57 -1.34 16 23 C -0.14 -1.82 9.45 -39.44 -0.37 -2.19 16 24 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 25 N -0.48 -6.02 10.36 -13.25 -0.14 -6.15 16 26 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 27 C -0.16 -1.45 9.84 -39.44 -0.39 -1.83 16 28 H 0.02 0.40 7.68 -51.93 -0.40 0.01 16 29 H 0.08 2.21 6.02 -51.93 -0.31 1.90 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 33 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.26 8.12 -51.93 -0.42 0.83 16 37 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.10 0.69 8.12 -51.92 -0.42 0.26 16 41 H 0.12 1.41 6.36 -51.93 -0.33 1.08 16 42 H 0.16 2.19 5.63 -52.49 -0.30 1.89 16 43 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -30.03 373.18 -8.95 -38.98 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.24 Total: 3.58 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.79 Total: -12.26 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.07 Total: -34.62 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.59 Total: -16.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.03 -8.95 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764844013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.876 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds