Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 C 1.50707 * 109.47302 * 240.00421 * 2 1 3 5 5 H 1.07996 * 119.99785 * 240.00456 * 4 2 1 6 6 C 1.37871 * 119.99946 * 59.99263 * 4 2 1 7 7 N 1.31519 * 120.00516 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99836 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47084 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46758 * 120.00354 * 8 6 4 11 11 H 1.48497 * 109.47351 * 240.00057 * 8 6 4 12 12 C 1.52997 * 109.47167 * 119.99964 * 2 1 3 13 13 O 1.45194 * 109.47084 * 302.41206 * 12 2 1 14 14 C 1.34898 * 116.99904 * 175.51549 * 13 12 2 15 15 O 1.21627 * 119.99589 * 6.00621 * 14 13 12 16 16 C 1.46485 * 120.00221 * 186.00535 * 14 13 12 17 17 C 1.38002 * 126.26523 * 5.19699 * 16 14 13 18 18 C 1.39787 * 106.96973 * 180.16173 * 17 16 14 19 19 C 1.35485 * 107.84872 * 359.61735 * 18 17 16 20 20 N 1.34959 * 108.97978 * 0.24008 * 19 18 17 21 21 C 1.46503 * 125.63854 * 179.97438 * 20 19 18 22 22 C 1.50699 * 109.47163 * 266.23109 * 21 20 19 23 23 C 1.38654 * 120.78546 * 263.67987 * 22 21 20 24 24 C 1.38207 * 119.15830 * 179.79770 * 23 22 21 25 25 N 1.31872 * 120.76545 * 0.49166 * 24 23 22 26 26 C 1.31868 * 121.72476 * 359.73743 * 25 24 23 27 27 C 1.38211 * 120.76562 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47485 * 301.95961 * 1 2 3 29 29 H 1.09003 * 109.47450 * 61.96088 * 1 2 3 30 30 H 1.08998 * 109.47215 * 181.95928 * 1 2 3 31 31 H 1.08994 * 109.47249 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47075 * 300.00008 * 3 2 1 33 33 H 1.08999 * 109.47174 * 60.00232 * 3 2 1 34 34 H 0.96994 * 120.00509 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46701 * 182.41348 * 12 2 1 36 36 H 1.08999 * 109.47377 * 62.41879 * 12 2 1 37 37 H 1.08004 * 126.51368 * 0.04735 * 17 16 14 38 38 H 1.08001 * 126.07920 * 179.87383 * 18 17 16 39 39 H 1.07992 * 125.51599 * 180.21669 * 19 18 17 40 40 H 1.09007 * 109.46692 * 26.22956 * 21 20 19 41 41 H 1.09001 * 109.47314 * 146.22356 * 21 20 19 42 42 H 1.07992 * 120.42149 * 0.02562 * 23 22 21 43 43 H 1.08002 * 119.61538 * 180.20538 * 24 23 22 44 44 H 1.08004 * 119.61846 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.41465 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 3.1456 -2.2875 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1465 -0.1872 -4.8166 12 6 2.0400 -0.7212 1.2492 13 8 1.5095 -0.0708 2.4340 14 6 1.7894 -0.6423 3.6235 15 8 2.5475 -1.5918 3.6786 16 6 1.1804 -0.1192 4.8488 17 6 0.2317 0.8799 4.9266 18 6 -0.0611 1.0599 6.2816 19 6 0.6902 0.1819 6.9889 20 7 1.4462 -0.5378 6.1334 21 6 2.3936 -1.5901 6.5093 22 6 3.7725 -0.9984 6.6486 23 6 4.6793 -1.0575 5.6013 24 6 5.9334 -0.5002 5.7641 25 7 6.2740 0.0737 6.9015 26 6 5.4393 0.1441 7.9199 27 6 4.1666 -0.3870 7.8289 28 1 -0.3634 0.5440 0.8719 29 1 -0.3634 0.4831 -0.9070 30 1 -0.3633 -1.0270 0.0351 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7093 1.1618 -3.4844 35 1 3.1292 -0.6838 1.2710 36 1 1.7125 -1.7606 1.2278 37 1 -0.2009 1.4213 4.0982 38 1 -0.7646 1.7695 6.6915 39 1 0.6853 0.0754 8.0636 40 1 2.0895 -2.0304 7.4590 41 1 2.4050 -2.3609 5.7387 42 1 4.4077 -1.5299 4.6689 43 1 6.6443 -0.5392 4.9520 44 1 5.7538 0.6224 8.8358 45 1 3.4877 -0.3265 8.6666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764844013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = -16.357340 kcal Electronic energy + Delta-G solvation = -27871.945988 eV Core-core repulsion = 24047.976387 eV Total energy + Delta-G solvation = -3823.969600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.59884 -41.06378 -40.81002 -38.20780 -36.64176 -35.57024 -33.29880 -32.30170 -32.20949 -30.69905 -27.68892 -27.59373 -27.57908 -27.07900 -24.52624 -24.18366 -23.29581 -21.70231 -20.74689 -20.65427 -19.06923 -18.03742 -17.87049 -17.71726 -17.34895 -17.19639 -16.83631 -16.64827 -16.14773 -15.62221 -14.99299 -14.96902 -14.85753 -14.77499 -14.54517 -14.36310 -14.07744 -13.61540 -13.50203 -13.33181 -13.28475 -13.11734 -13.05352 -12.83419 -12.61958 -12.43891 -12.34963 -12.14424 -11.74461 -11.60759 -11.29271 -11.20794 -10.86386 -10.75181 -10.58173 -10.41905 -10.16722 -9.77700 -9.27458 -8.05708 -6.24256 0.00402 0.12157 0.23966 1.38270 1.41452 1.45696 1.55113 1.72566 2.16884 2.22628 2.45535 2.83868 3.17652 3.43273 3.52025 3.57207 3.79832 4.04564 4.07365 4.12250 4.19309 4.23750 4.26058 4.42760 4.45766 4.54865 4.58270 4.64088 4.80090 4.82861 4.91064 5.02622 5.14123 5.17886 5.21683 5.24388 5.25176 5.36228 5.55833 5.61460 5.63652 5.69882 5.77841 5.87494 6.05280 6.16154 6.28942 6.35522 6.75970 6.83090 6.92644 7.43959 8.94214 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003141 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.869361 B = 8913.223178 C =10038.633518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.118 4.118 4 C -0.533 4.533 5 H 0.050 0.950 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.103 3.897 13 O -0.345 6.345 14 C 0.525 3.475 15 O -0.545 6.545 16 C -0.085 4.085 17 C -0.111 4.111 18 C -0.222 4.222 19 C 0.054 3.946 20 N -0.404 5.404 21 C 0.137 3.863 22 C -0.075 4.075 23 C -0.166 4.166 24 C 0.079 3.921 25 N -0.505 5.505 26 C 0.086 3.914 27 C -0.142 4.142 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.222 0.778 40 H 0.151 0.849 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.159 0.841 44 H 0.188 0.812 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.459 -1.319 25.374 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.205 1.205 12 C 0.029 3.971 13 O -0.260 6.260 14 C 0.373 3.627 15 O -0.439 6.439 16 C -0.194 4.194 17 C -0.138 4.138 18 C -0.245 4.245 19 C -0.081 4.081 20 N -0.079 5.079 21 C 0.017 3.983 22 C -0.084 4.084 23 C -0.186 4.186 24 C -0.077 4.077 25 N -0.214 5.214 26 C -0.071 4.071 27 C -0.162 4.162 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.239 0.761 40 H 0.168 0.832 41 H 0.113 0.887 42 H 0.147 0.853 43 H 0.177 0.823 44 H 0.205 0.795 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.703 -1.407 25.306 25.402 hybrid contribution -0.218 -0.944 -1.849 2.087 sum 1.485 -2.350 23.457 23.621 Atomic orbital electron populations 1.21606 0.97076 0.98407 1.00474 1.18258 0.93660 0.93115 0.88728 1.21624 0.97681 0.98092 1.00177 1.21220 1.32301 1.12476 0.91087 0.93165 1.25518 0.94945 0.95557 1.01195 1.69945 1.36737 1.23297 1.23825 0.85585 0.78175 0.78667 0.79663 1.19660 1.20498 1.20549 1.23269 0.96948 0.95661 0.81202 1.86581 1.70968 1.53675 1.14826 1.20208 0.78091 0.80164 0.84200 1.90694 1.36381 1.28799 1.87994 1.18870 1.09319 1.07514 0.83712 1.21806 0.96640 0.96093 0.99244 1.21253 1.06476 1.05045 0.91758 1.22772 0.93914 0.93694 0.97771 1.43892 1.31179 1.28874 1.03907 1.21104 0.83670 0.88173 1.05394 1.20522 0.95487 0.97985 0.94388 1.22498 0.95262 1.00492 1.00362 1.22928 0.95233 0.93971 0.95557 1.67690 1.37351 1.15379 1.01012 1.23389 0.90180 0.95944 0.97625 1.22420 0.98300 0.97190 0.98246 0.95047 0.91712 0.96145 0.96207 0.91704 0.95294 0.92801 0.93229 0.93137 0.83917 0.81123 0.76126 0.83168 0.88664 0.85300 0.82336 0.79472 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.08 71.98 0.58 -5.20 16 2 C 0.06 3.14 0.58 -52.93 -0.03 3.11 16 3 C -0.12 -5.84 8.13 71.98 0.59 -5.26 16 4 C -0.53 -28.92 8.01 25.60 0.21 -28.72 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 6 C 0.03 1.50 5.14 84.65 0.44 1.93 16 7 N -0.90 -49.46 9.34 21.45 0.20 -49.26 16 8 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.10 4.67 4.29 71.98 0.31 4.98 16 13 O -0.35 -14.41 8.74 -58.13 -0.51 -14.92 16 14 C 0.52 19.55 7.91 69.97 0.55 20.10 16 15 O -0.54 -20.93 11.84 19.42 0.23 -20.70 16 16 C -0.09 -2.56 6.88 40.32 0.28 -2.28 16 17 C -0.11 -2.97 10.70 22.59 0.24 -2.73 16 18 C -0.22 -4.04 10.81 22.01 0.24 -3.81 16 19 C 0.05 0.78 11.34 83.58 0.95 1.73 16 20 N -0.40 -8.57 2.73 -515.59 -1.41 -9.98 16 21 C 0.14 2.43 5.71 85.63 0.49 2.92 16 22 C -0.07 -1.51 5.50 -19.67 -0.11 -1.62 16 23 C -0.17 -4.37 9.45 22.36 0.21 -4.16 16 24 C 0.08 2.02 11.18 84.68 0.95 2.97 16 25 N -0.50 -12.27 10.36 -195.83 -2.03 -14.30 16 26 C 0.09 1.47 11.18 84.68 0.95 2.42 16 27 C -0.14 -2.03 9.84 22.36 0.22 -1.81 16 28 H 0.03 1.40 7.68 -2.39 -0.02 1.38 16 29 H 0.06 3.44 6.02 -2.39 -0.01 3.43 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 33 H 0.03 1.31 7.75 -2.39 -0.02 1.29 16 34 H 0.26 13.73 8.31 -92.71 -0.77 12.95 16 35 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.05 2.32 8.12 -2.39 -0.02 2.30 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.15 1.21 8.12 -2.38 -0.02 1.19 16 41 H 0.10 2.22 6.36 -2.39 -0.02 2.20 16 42 H 0.13 4.02 5.63 -2.91 -0.02 4.00 16 43 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -68.68 373.18 6.55 -62.12 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.99 Total: 17.52 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 7.05 Total: -15.43 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -3.24 Total: -73.54 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.28 Total: -35.62 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.68 6.55 -62.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764844013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.766 kcal (2) G-P(sol) polarization free energy of solvation -68.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds