Wall clock time and date at job start Tue Mar 31 2020 14:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 C 1.50699 * 109.47254 * 239.99903 * 2 1 3 5 5 H 1.08004 * 120.00248 * 239.99898 * 4 2 1 6 6 C 1.37883 * 120.00069 * 59.99843 * 4 2 1 7 7 N 1.31519 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46959 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47254 * 119.99709 * 8 6 4 11 11 H 1.48496 * 109.46660 * 240.00011 * 8 6 4 12 12 C 1.53003 * 109.47379 * 119.99865 * 2 1 3 13 13 O 1.45197 * 109.47000 * 300.00008 * 12 2 1 14 14 C 1.34235 * 116.99921 * 179.97438 * 13 12 2 15 15 O 1.20820 * 119.99739 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47379 * 180.02562 * 16 14 13 18 18 C 1.38271 * 119.93436 * 89.99456 * 17 16 14 19 19 C 1.38121 * 120.06786 * 180.02562 * 18 17 16 20 20 C 1.38838 * 119.93302 * 0.02562 * 19 18 17 21 21 N 1.40179 * 120.06716 * 179.97438 * 20 19 18 22 22 C 1.35233 * 126.05401 * 179.97438 * 21 20 19 23 23 C 1.35316 * 107.71417 * 180.02562 * 22 21 20 24 24 C 1.39925 * 107.93089 * 359.97438 * 23 22 21 25 25 N 1.30869 * 108.24316 * 0.02562 * 24 23 22 26 26 C 1.38845 * 119.86452 * 0.27564 * 20 19 18 27 27 C 1.38123 * 119.93189 * 359.42683 * 26 20 19 28 28 H 1.08995 * 109.47343 * 299.99773 * 1 2 3 29 29 H 1.08999 * 109.47494 * 60.00615 * 1 2 3 30 30 H 1.09002 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47251 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46406 * 300.00051 * 3 2 1 33 33 H 1.08995 * 109.46798 * 59.99893 * 3 2 1 34 34 H 0.96998 * 119.99612 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47082 * 179.97438 * 12 2 1 36 36 H 1.09006 * 109.47020 * 60.00339 * 12 2 1 37 37 H 1.09005 * 109.47343 * 60.00154 * 16 14 13 38 38 H 1.08998 * 109.47148 * 300.00336 * 16 14 13 39 39 H 1.07998 * 119.96671 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.03486 * 180.02562 * 19 18 17 41 41 H 1.08002 * 126.14103 * 0.02562 * 22 21 20 42 42 H 1.08002 * 126.03356 * 180.26635 * 23 22 21 43 43 H 1.08002 * 125.87704 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.03187 * 179.72071 * 26 20 19 45 45 H 1.07992 * 119.96334 * 180.27433 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8160 11 1 3.1465 -0.1873 -4.8164 12 6 2.0400 -0.7212 1.2493 13 8 1.5561 -0.0367 2.4348 14 6 1.9164 -0.5471 3.6229 15 8 2.6134 -1.5328 3.6706 16 6 1.4514 0.1094 4.8972 17 6 1.9904 -0.6524 6.0804 18 6 3.2153 -0.3091 6.6224 19 6 3.7121 -1.0059 7.7065 20 6 2.9805 -2.0523 8.2519 21 7 3.4823 -2.7617 9.3519 22 6 2.8748 -3.7960 9.9763 23 6 3.6819 -4.1996 10.9846 24 6 4.8206 -3.3865 10.9768 25 7 4.7018 -2.5246 9.9992 26 6 1.7538 -2.3987 7.7016 27 6 1.2594 -1.6942 6.6213 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.7086 1.1612 -3.4844 35 1 3.1300 -0.7216 1.2490 36 1 1.6768 -1.7490 1.2493 37 1 0.3619 0.1086 4.9298 38 1 1.8151 1.1364 4.9305 39 1 3.7845 0.5042 6.1970 40 1 4.6687 -0.7370 8.1296 41 1 1.9174 -4.2231 9.7167 42 1 3.4844 -5.0098 11.6709 43 1 5.6540 -3.4579 11.6600 44 1 1.1845 -3.2151 8.1208 45 1 0.3032 -1.9604 6.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764847817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:16 Heat of formation + Delta-G solvation = 14.856769 kcal Electronic energy + Delta-G solvation = -26489.820261 eV Core-core repulsion = 22667.204206 eV Total energy + Delta-G solvation = -3822.616055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80616 -40.23304 -39.14436 -36.63483 -34.86531 -34.34823 -31.67800 -31.42340 -31.09580 -30.31386 -27.58954 -25.63872 -25.61291 -25.03658 -23.48685 -23.22136 -21.12680 -20.88712 -20.28569 -18.85956 -18.58965 -17.27181 -16.22185 -16.19843 -15.72354 -15.57042 -15.53631 -15.27850 -15.21155 -14.65655 -14.17865 -13.86857 -13.69781 -13.26359 -13.22564 -13.03800 -12.93008 -12.64284 -12.16796 -11.92926 -11.82250 -11.49744 -11.40306 -11.20713 -10.99268 -10.97832 -10.69058 -10.56712 -10.43687 -10.24042 -10.06957 -9.91084 -9.45771 -9.42896 -9.32281 -9.27342 -8.76780 -8.39682 -8.26073 -6.03837 -4.15222 0.51887 1.08401 1.85284 2.07328 2.44277 2.59129 3.14261 3.25434 3.33946 3.38573 3.65650 4.14181 4.37465 4.37934 4.44238 4.55598 4.64643 4.89065 5.05506 5.11619 5.21232 5.22672 5.30450 5.35754 5.41679 5.50024 5.57255 5.72025 5.91970 5.96967 6.07752 6.08962 6.26017 6.32103 6.43281 6.45944 6.73178 6.87767 6.96404 7.06031 7.11792 7.13954 7.29716 7.38865 7.60363 7.68660 8.03406 8.13381 8.24365 8.37931 8.84949 9.50349 10.97370 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.001971 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.573797 B =14203.944410 C =14512.356538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.085 3.915 13 O -0.349 6.349 14 C 0.453 3.547 15 O -0.512 6.512 16 C -0.077 4.077 17 C -0.075 4.075 18 C -0.078 4.078 19 C -0.116 4.116 20 C 0.154 3.846 21 N -0.319 5.319 22 C 0.053 3.947 23 C -0.266 4.266 24 C 0.052 3.948 25 N -0.290 5.290 26 C -0.138 4.138 27 C -0.075 4.075 28 H 0.017 0.983 29 H 0.084 0.916 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.178 0.822 42 H 0.153 0.847 43 H 0.189 0.811 44 H 0.130 0.870 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -4.088 24.988 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 C -0.187 4.187 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.012 3.988 13 O -0.265 6.265 14 C 0.295 3.705 15 O -0.402 6.402 16 C -0.115 4.115 17 C -0.076 4.076 18 C -0.096 4.096 19 C -0.136 4.136 20 C 0.062 3.938 21 N -0.094 5.094 22 C -0.090 4.090 23 C -0.294 4.294 24 C -0.135 4.135 25 N -0.109 5.109 26 C -0.159 4.159 27 C -0.094 4.094 28 H 0.036 0.964 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.195 0.805 42 H 0.171 0.829 43 H 0.206 0.794 44 H 0.148 0.852 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.913 -3.267 24.134 24.372 hybrid contribution 0.085 -1.466 -0.433 1.531 sum 0.999 -4.733 23.702 24.190 Atomic orbital electron populations 1.21764 0.97302 0.98917 1.00680 1.18261 0.93451 0.93107 0.88342 1.21765 0.98068 0.98173 1.00680 1.20975 1.31861 1.12261 0.89798 0.92486 1.24867 0.94823 0.94939 0.98811 1.69839 1.36358 1.22614 1.23198 0.86484 0.78651 0.79708 0.82866 1.19787 1.20958 1.20958 1.23667 0.98180 0.95749 0.81165 1.86516 1.69166 1.55895 1.14896 1.23349 0.78050 0.82791 0.86286 1.90656 1.35534 1.25679 1.88285 1.20298 1.03563 1.00338 0.87290 1.19425 0.95220 0.96946 0.96005 1.20948 0.94595 0.99429 0.94673 1.20819 1.00561 0.95114 0.97085 1.17558 0.94254 0.94363 0.87640 1.45925 1.14944 1.24983 1.23573 1.22665 1.00117 0.91180 0.95012 1.21605 0.96743 1.06864 1.04198 1.24081 0.99237 0.93584 0.96594 1.77458 0.99188 1.24068 1.10235 1.20709 0.94610 1.01982 0.98558 1.20831 1.00048 0.93930 0.94599 0.96440 0.89736 0.95874 0.95855 0.89745 0.96426 0.92956 0.92582 0.92595 0.86717 0.86716 0.84857 0.84435 0.80529 0.82897 0.79412 0.85196 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.11 37.16 0.30 -2.75 16 2 C 0.07 1.67 0.58 -155.66 -0.09 1.58 16 3 C -0.13 -3.07 8.11 37.16 0.30 -2.77 16 4 C -0.51 -13.58 8.01 -34.44 -0.28 -13.86 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -23.77 9.35 55.43 0.52 -23.26 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.09 1.87 4.26 37.16 0.16 2.02 16 13 O -0.35 -6.68 8.88 -39.27 -0.35 -7.02 16 14 C 0.45 7.50 7.95 36.00 0.29 7.78 16 15 O -0.51 -10.02 15.78 -18.75 -0.30 -10.31 16 16 C -0.08 -0.86 5.94 -29.04 -0.17 -1.03 16 17 C -0.08 -0.85 4.38 -104.59 -0.46 -1.31 16 18 C -0.08 -0.87 9.69 -39.61 -0.38 -1.26 16 19 C -0.12 -1.36 9.66 -39.40 -0.38 -1.74 16 20 C 0.15 1.78 6.69 -83.59 -0.56 1.22 16 21 N -0.32 -3.63 3.80 -10.70 -0.04 -3.67 16 22 C 0.05 0.46 10.80 -17.09 -0.18 0.28 16 23 C -0.27 -2.07 10.81 -39.99 -0.43 -2.50 16 24 C 0.05 0.46 12.03 -17.33 -0.21 0.25 16 25 N -0.29 -3.45 11.87 30.64 0.36 -3.09 16 26 C -0.14 -1.37 9.46 -39.40 -0.37 -1.74 16 27 C -0.08 -0.78 9.69 -39.61 -0.38 -1.16 16 28 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 29 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 33 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 37 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.14 1.57 7.70 -52.49 -0.40 1.17 16 41 H 0.18 0.94 7.04 -52.49 -0.37 0.57 16 42 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.13 0.93 6.74 -52.49 -0.35 0.58 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -32.06 377.83 -8.39 -40.46 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.32 Total: 0.74 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -2.95 Total: -15.30 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.84 Total: -30.02 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.64 Total: -17.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.06 -8.39 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764847817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.312 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds