Wall clock time and date at job start Tue Mar 31 2020 14:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 C 1.50699 * 109.47254 * 239.99903 * 2 1 3 5 5 H 1.08004 * 120.00248 * 239.99898 * 4 2 1 6 6 C 1.37883 * 120.00069 * 59.99843 * 4 2 1 7 7 N 1.31519 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46959 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47254 * 119.99709 * 8 6 4 11 11 H 1.48496 * 109.46660 * 240.00011 * 8 6 4 12 12 C 1.53003 * 109.47379 * 119.99865 * 2 1 3 13 13 O 1.45197 * 109.47000 * 300.00008 * 12 2 1 14 14 C 1.34235 * 116.99921 * 179.97438 * 13 12 2 15 15 O 1.20820 * 119.99739 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47379 * 180.02562 * 16 14 13 18 18 C 1.38271 * 119.93436 * 89.99456 * 17 16 14 19 19 C 1.38121 * 120.06786 * 180.02562 * 18 17 16 20 20 C 1.38838 * 119.93302 * 0.02562 * 19 18 17 21 21 N 1.40179 * 120.06716 * 179.97438 * 20 19 18 22 22 C 1.35233 * 126.05401 * 179.97438 * 21 20 19 23 23 C 1.35316 * 107.71417 * 180.02562 * 22 21 20 24 24 C 1.39925 * 107.93089 * 359.97438 * 23 22 21 25 25 N 1.30869 * 108.24316 * 0.02562 * 24 23 22 26 26 C 1.38845 * 119.86452 * 0.27564 * 20 19 18 27 27 C 1.38123 * 119.93189 * 359.42683 * 26 20 19 28 28 H 1.08995 * 109.47343 * 299.99773 * 1 2 3 29 29 H 1.08999 * 109.47494 * 60.00615 * 1 2 3 30 30 H 1.09002 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47251 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46406 * 300.00051 * 3 2 1 33 33 H 1.08995 * 109.46798 * 59.99893 * 3 2 1 34 34 H 0.96998 * 119.99612 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47082 * 179.97438 * 12 2 1 36 36 H 1.09006 * 109.47020 * 60.00339 * 12 2 1 37 37 H 1.09005 * 109.47343 * 60.00154 * 16 14 13 38 38 H 1.08998 * 109.47148 * 300.00336 * 16 14 13 39 39 H 1.07998 * 119.96671 * 359.97438 * 18 17 16 40 40 H 1.07999 * 120.03486 * 180.02562 * 19 18 17 41 41 H 1.08002 * 126.14103 * 0.02562 * 22 21 20 42 42 H 1.08002 * 126.03356 * 180.26635 * 23 22 21 43 43 H 1.08002 * 125.87704 * 180.02562 * 24 23 22 44 44 H 1.07997 * 120.03187 * 179.72071 * 26 20 19 45 45 H 1.07992 * 119.96334 * 180.27433 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8160 11 1 3.1465 -0.1873 -4.8164 12 6 2.0400 -0.7212 1.2493 13 8 1.5561 -0.0367 2.4348 14 6 1.9164 -0.5471 3.6229 15 8 2.6134 -1.5328 3.6706 16 6 1.4514 0.1094 4.8972 17 6 1.9904 -0.6524 6.0804 18 6 3.2153 -0.3091 6.6224 19 6 3.7121 -1.0059 7.7065 20 6 2.9805 -2.0523 8.2519 21 7 3.4823 -2.7617 9.3519 22 6 2.8748 -3.7960 9.9763 23 6 3.6819 -4.1996 10.9846 24 6 4.8206 -3.3865 10.9768 25 7 4.7018 -2.5246 9.9992 26 6 1.7538 -2.3987 7.7016 27 6 1.2594 -1.6942 6.6213 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 0.7086 1.1612 -3.4844 35 1 3.1300 -0.7216 1.2490 36 1 1.6768 -1.7490 1.2493 37 1 0.3619 0.1086 4.9298 38 1 1.8151 1.1364 4.9305 39 1 3.7845 0.5042 6.1970 40 1 4.6687 -0.7370 8.1296 41 1 1.9174 -4.2231 9.7167 42 1 3.4844 -5.0098 11.6709 43 1 5.6540 -3.4579 11.6600 44 1 1.1845 -3.2151 8.1208 45 1 0.3032 -1.9604 6.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764847817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:15 Heat of formation + Delta-G solvation = -0.327514 kcal Electronic energy + Delta-G solvation = -26490.478701 eV Core-core repulsion = 22667.204206 eV Total energy + Delta-G solvation = -3823.274495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.49130 -41.51554 -40.08196 -38.25804 -36.57624 -35.18467 -33.28843 -32.42948 -32.04778 -31.00137 -28.59295 -27.55059 -27.39866 -26.80990 -24.24254 -24.10203 -22.19712 -21.55478 -21.26469 -20.69144 -19.29198 -18.68339 -17.80229 -17.49052 -17.36305 -16.58412 -16.38616 -16.29891 -16.18631 -16.00699 -14.99473 -14.97943 -14.74969 -14.56851 -14.53078 -14.33988 -13.75715 -13.64877 -13.45479 -13.39219 -13.11056 -13.03580 -12.79198 -12.72470 -12.59319 -12.31942 -12.17462 -12.14372 -11.69665 -11.68491 -11.62915 -11.31738 -11.25119 -11.10784 -10.71702 -10.40344 -10.13724 -10.06193 -9.02476 -8.04846 -6.22467 -0.25331 0.29450 1.11350 1.29327 1.39252 1.40983 1.44337 1.53897 1.83501 1.92994 2.44827 2.76041 3.18364 3.45912 3.57426 3.77967 3.85915 3.97299 4.00784 4.20764 4.28630 4.30095 4.30618 4.41839 4.54700 4.63992 4.64505 4.73468 4.74881 4.87970 4.95739 5.02782 5.06954 5.14696 5.21524 5.21804 5.25353 5.39448 5.48057 5.60945 5.63461 5.65819 5.70842 5.76206 6.10135 6.17314 6.19632 6.38197 6.62001 6.79633 6.87809 7.45327 8.94678 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.001971 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.573797 B =14203.944410 C =14512.356538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.059 3.941 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.046 0.954 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.098 3.902 13 O -0.352 6.352 14 C 0.451 3.549 15 O -0.546 6.546 16 C -0.065 4.065 17 C -0.092 4.092 18 C -0.085 4.085 19 C -0.136 4.136 20 C 0.142 3.858 21 N -0.337 5.337 22 C 0.044 3.956 23 C -0.265 4.265 24 C 0.050 3.950 25 N -0.339 5.339 26 C -0.139 4.139 27 C -0.078 4.078 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.208 0.792 42 H 0.183 0.817 43 H 0.217 0.783 44 H 0.158 0.842 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -4.811 26.450 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.058 3.942 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.536 5.536 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.025 3.975 13 O -0.268 6.268 14 C 0.296 3.704 15 O -0.436 6.436 16 C -0.102 4.102 17 C -0.092 4.092 18 C -0.103 4.103 19 C -0.156 4.156 20 C 0.050 3.950 21 N -0.113 5.113 22 C -0.098 4.098 23 C -0.293 4.293 24 C -0.136 4.136 25 N -0.158 5.158 26 C -0.159 4.159 27 C -0.096 4.096 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.147 0.853 41 H 0.224 0.776 42 H 0.200 0.800 43 H 0.234 0.766 44 H 0.176 0.824 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.092 -3.987 25.619 25.928 hybrid contribution 0.430 -1.298 -0.740 1.554 sum 0.339 -5.285 24.879 25.437 Atomic orbital electron populations 1.21607 0.96864 0.98606 1.00462 1.18290 0.93820 0.93300 0.88766 1.21615 0.97636 0.97900 1.00453 1.21227 1.32153 1.12357 0.91283 0.93528 1.25502 0.95058 0.95620 1.01114 1.69942 1.36695 1.23234 1.23746 0.85619 0.78165 0.78646 0.79857 1.19911 1.20483 1.20593 1.23179 0.97276 0.95108 0.81944 1.86507 1.69378 1.55822 1.15121 1.24445 0.76970 0.82332 0.86623 1.90648 1.37096 1.27389 1.88497 1.20433 1.05308 1.00766 0.83690 1.19538 0.95507 0.97817 0.96367 1.21117 0.94918 0.99713 0.94580 1.20868 1.00725 0.96120 0.97887 1.17847 0.94860 0.94359 0.87947 1.46059 1.15289 1.25960 1.24008 1.23342 1.01281 0.90377 0.94812 1.22042 0.95925 1.07097 1.04239 1.24723 1.00314 0.92675 0.95887 1.77415 1.00415 1.26095 1.11897 1.21020 0.94123 1.02505 0.98273 1.21170 1.00745 0.93283 0.94431 0.94484 0.91933 0.96176 0.96330 0.91909 0.94518 0.92844 0.93701 0.93457 0.83647 0.84268 0.83978 0.85323 0.77552 0.79991 0.76634 0.82423 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.11 71.98 0.58 -4.93 16 2 C 0.06 2.83 0.58 -52.93 -0.03 2.80 16 3 C -0.12 -5.58 8.11 71.98 0.58 -5.00 16 4 C -0.53 -28.53 8.01 25.60 0.21 -28.32 16 5 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 6 C 0.03 1.44 5.15 84.66 0.44 1.88 16 7 N -0.90 -48.51 9.35 21.45 0.20 -48.31 16 8 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 12 C 0.10 4.31 4.26 71.98 0.31 4.61 16 13 O -0.35 -13.00 8.88 -51.46 -0.46 -13.46 16 14 C 0.45 14.29 7.95 71.23 0.57 14.86 16 15 O -0.55 -21.08 15.78 21.98 0.35 -20.73 16 16 C -0.07 -1.28 5.94 29.10 0.17 -1.10 16 17 C -0.09 -1.92 4.38 -19.85 -0.09 -2.00 16 18 C -0.08 -1.87 9.69 22.25 0.22 -1.65 16 19 C -0.14 -3.26 9.66 22.39 0.22 -3.04 16 20 C 0.14 3.23 6.69 38.09 0.25 3.49 16 21 N -0.34 -7.49 3.80 -187.75 -0.71 -8.20 16 22 C 0.04 0.67 10.80 83.49 0.90 1.57 16 23 C -0.27 -3.55 10.81 22.00 0.24 -3.31 16 24 C 0.05 0.83 12.03 85.25 1.03 1.85 16 25 N -0.34 -8.07 11.87 -56.97 -0.68 -8.75 16 26 C -0.14 -2.51 9.46 22.39 0.21 -2.30 16 27 C -0.08 -1.44 9.69 22.25 0.22 -1.23 16 28 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 30 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 33 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 34 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 35 H 0.04 2.03 8.13 -2.39 -0.02 2.01 16 36 H 0.05 2.12 8.13 -2.38 -0.02 2.10 16 37 H 0.15 2.00 8.09 -2.38 -0.02 1.98 16 38 H 0.14 2.09 8.08 -2.39 -0.02 2.07 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 40 H 0.13 3.16 7.70 -2.91 -0.02 3.14 16 41 H 0.21 1.59 7.04 -2.91 -0.02 1.57 16 42 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.16 1.81 6.74 -2.91 -0.02 1.79 16 45 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -70.19 377.83 7.73 -62.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.99 Total: 14.13 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 6.02 Total: -21.83 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: -1.19 Total: -65.26 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.11 Total: -34.19 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -70.19 7.73 -62.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764847817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.131 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds