Wall clock time and date at job start Tue Mar 31 2020 15:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34750 * 116.99737 * 269.99989 * 13 3 2 15 15 O 1.21527 * 119.99990 * 0.02562 * 14 13 3 16 16 C 1.47286 * 119.99899 * 179.97438 * 14 13 3 17 17 C 1.41346 * 126.42842 * 359.69691 * 16 14 13 18 18 N 1.30430 * 108.01477 * 179.84731 * 17 16 14 19 19 N 1.39922 * 108.91646 * 0.40847 * 18 17 16 20 20 C 1.46501 * 125.74214 * 179.73864 * 19 18 17 21 21 C 1.34226 * 108.51805 * 359.73384 * 19 18 17 22 22 C 1.50699 * 126.29666 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47015 * 90.00275 * 22 21 19 24 24 C 1.38232 * 119.99708 * 269.72412 * 23 22 21 25 25 C 1.38240 * 119.99635 * 179.76568 * 24 23 22 26 26 C 1.38237 * 119.99961 * 0.50614 * 25 24 23 27 27 C 1.38233 * 119.99990 * 359.75000 * 26 25 24 28 28 C 1.38232 * 120.00073 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 31 31 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 33 33 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08003 * 125.98887 * 0.02562 * 17 16 14 36 36 H 1.09006 * 109.46844 * 269.99716 * 20 19 18 37 37 H 1.08993 * 109.47653 * 29.99484 * 20 19 18 38 38 H 1.09001 * 109.47618 * 150.00116 * 20 19 18 39 39 H 1.09002 * 109.46747 * 209.99842 * 22 21 19 40 40 H 1.08992 * 109.47519 * 329.99937 * 22 21 19 41 41 H 1.07998 * 120.00341 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.99751 * 180.23223 * 25 24 23 43 43 H 1.08003 * 119.99974 * 179.72535 * 26 25 24 44 44 H 1.07996 * 119.99862 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99982 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7279 1.2561 15 8 -0.2278 2.7395 0.2599 16 6 0.0131 3.4083 2.4805 17 6 0.7056 3.4743 3.7109 18 7 -0.0202 4.1654 4.5457 19 7 -1.1984 4.5609 3.9027 20 6 -2.2777 5.3490 4.5029 21 6 -1.1732 4.0968 2.6435 22 6 -2.2429 4.2906 1.5998 23 6 -1.9646 5.5520 0.8235 24 6 -2.4935 6.7562 1.2488 25 6 -2.2342 7.9140 0.5394 26 6 -1.4546 7.8658 -0.6012 27 6 -0.9300 6.6607 -1.0294 28 6 -1.1846 5.5039 -0.3168 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8295 -0.0694 -2.9455 35 1 1.6683 3.0326 3.9218 36 1 -3.0050 4.6790 4.9615 37 1 -1.8643 6.0117 5.2631 38 1 -2.7670 5.9426 3.7306 39 1 -2.2457 3.4387 0.9199 40 1 -3.2150 4.3704 2.0862 41 1 -3.1066 6.7931 2.1371 42 1 -2.6444 8.8555 0.8738 43 1 -1.2557 8.7697 -1.1579 44 1 -0.3213 6.6230 -1.9207 45 1 -0.7751 4.5623 -0.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774260993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:37 Heat of formation + Delta-G solvation = 5.822636 kcal Electronic energy + Delta-G solvation = -28341.505804 eV Core-core repulsion = 24518.497999 eV Total energy + Delta-G solvation = -3823.007805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44579 -39.13410 -39.06724 -35.64264 -34.13762 -33.36832 -32.95527 -31.29501 -30.84768 -30.09874 -27.77458 -26.88039 -26.44720 -23.45075 -22.66167 -22.40818 -21.55645 -20.79650 -19.67573 -19.12197 -17.44291 -16.89467 -16.49782 -15.99037 -15.73283 -15.28841 -15.07582 -14.91325 -14.91034 -14.44635 -14.24652 -13.56484 -13.40235 -13.15213 -12.95493 -12.82672 -12.77353 -12.65772 -12.40757 -12.03847 -11.96179 -11.40387 -11.30868 -11.20998 -11.11790 -10.94481 -10.90097 -10.65610 -10.56690 -10.22968 -9.72327 -9.50859 -9.37558 -9.26007 -8.89101 -8.76176 -8.73393 -8.50051 -8.38426 -6.14339 -4.20470 1.24585 1.44287 1.63478 2.32820 2.36242 3.27406 3.33214 3.37094 3.75427 3.82316 3.86897 4.34832 4.48179 4.58912 4.71153 4.75081 4.87601 4.97596 4.99930 5.17009 5.17975 5.22986 5.26922 5.49435 5.51752 5.59898 5.71801 5.82277 6.01262 6.11440 6.21154 6.29810 6.37478 6.42850 6.51053 6.60946 6.61534 6.68375 6.81343 6.95241 7.03322 7.06266 7.23648 7.35824 7.62419 7.67680 7.80584 8.03230 8.22744 8.74223 9.00235 9.44752 10.92334 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003838 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.679298 B = 7294.440591 C = 8223.456840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.225 3.775 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.908 3.092 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.351 6.351 14 C 0.536 3.464 15 O -0.526 6.526 16 C -0.265 4.265 17 C 0.104 3.896 18 N -0.306 5.306 19 N -0.363 5.363 20 C 0.095 3.905 21 C 0.160 3.840 22 C -0.026 4.026 23 C -0.080 4.080 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.095 4.095 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.198 0.802 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.710 11.643 8.381 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.735 3.265 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.267 6.267 14 C 0.381 3.619 15 O -0.419 6.419 16 C -0.278 4.278 17 C -0.083 4.083 18 N -0.125 5.125 19 N -0.142 5.142 20 C -0.046 4.046 21 C 0.028 3.972 22 C -0.065 4.065 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.113 4.113 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.215 0.785 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.031 12.077 9.176 20.662 hybrid contribution 1.018 -0.367 -0.928 1.425 sum -13.014 11.710 8.247 19.352 Atomic orbital electron populations 1.21847 0.98373 0.98832 1.00817 1.22017 0.92674 0.99463 1.03243 1.20629 0.94807 0.88648 0.78688 0.93452 1.21063 0.89830 1.38560 1.06264 0.91385 1.24856 0.99039 0.94841 0.95117 1.69891 1.35244 1.37905 1.09578 0.86325 0.84184 0.78665 0.77279 1.20408 1.21046 1.19652 1.86525 1.33673 1.62532 1.43933 1.19725 0.80571 0.75774 0.85821 1.90638 1.55796 1.60158 1.35301 1.19393 0.97972 1.14269 0.96153 1.24223 0.99382 0.94692 0.90008 1.77191 0.94152 1.19886 1.21282 1.48229 1.16238 1.41439 1.08309 1.21996 0.87366 0.95330 0.99943 1.21191 0.96064 0.93690 0.86206 1.19442 0.93964 0.98653 0.94414 1.19549 0.98923 0.93524 0.96092 1.20992 1.00850 0.92456 0.99763 1.21017 0.99624 0.97825 0.96069 1.21172 0.98009 0.97905 0.96860 1.21287 0.99622 0.92619 1.00170 1.21694 0.95628 1.00124 0.93864 0.94788 0.92789 0.95085 0.87441 0.94097 0.92492 0.78506 0.90365 0.88853 0.89412 0.85878 0.89890 0.86718 0.86370 0.86330 0.85838 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.16 0.32 -2.73 16 2 C -0.14 -3.34 5.48 -26.73 -0.15 -3.49 16 3 C 0.22 5.86 2.25 -27.88 -0.06 5.80 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.39 8.90 -34.44 -0.31 -14.69 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.80 11.28 55.43 0.63 -24.18 16 9 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.35 -8.28 9.65 -40.63 -0.39 -8.67 16 14 C 0.54 11.17 6.41 34.41 0.22 11.39 16 15 O -0.53 -11.19 9.48 -19.29 -0.18 -11.37 16 16 C -0.27 -4.67 6.13 -105.08 -0.64 -5.31 16 17 C 0.10 1.69 11.87 -16.97 -0.20 1.49 16 18 N -0.31 -4.68 12.50 30.87 0.39 -4.30 16 19 N -0.36 -4.76 3.98 -63.33 -0.25 -5.01 16 20 C 0.09 0.75 11.06 59.85 0.66 1.41 16 21 C 0.16 2.35 6.24 -81.59 -0.51 1.84 16 22 C -0.03 -0.33 4.81 -29.03 -0.14 -0.47 16 23 C -0.08 -1.05 5.12 -104.62 -0.54 -1.59 16 24 C -0.12 -1.33 9.43 -39.58 -0.37 -1.70 16 25 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 27 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 28 C -0.10 -1.44 9.58 -39.58 -0.38 -1.82 16 29 H 0.03 0.71 6.06 -51.93 -0.31 0.40 16 30 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.11 2.87 5.94 -51.93 -0.31 2.56 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.20 2.87 8.06 -52.48 -0.42 2.45 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.53 5.32 -51.93 -0.28 0.26 16 39 H 0.12 1.76 6.45 -51.93 -0.33 1.43 16 40 H 0.08 0.76 7.64 -51.93 -0.40 0.36 16 41 H 0.11 0.90 6.11 -52.49 -0.32 0.58 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 45 H 0.15 2.60 5.49 -52.49 -0.29 2.31 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.47 367.88 -8.62 -40.09 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.94 Total: 5.68 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.38 Total: -13.76 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.76 Total: -33.49 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.57 Total: -20.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.47 -8.62 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.916 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds