Wall clock time and date at job start Tue Mar 31 2020 15:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34750 * 116.99737 * 269.99989 * 13 3 2 15 15 O 1.21527 * 119.99990 * 0.02562 * 14 13 3 16 16 C 1.47286 * 119.99899 * 179.97438 * 14 13 3 17 17 C 1.41346 * 126.42842 * 359.69691 * 16 14 13 18 18 N 1.30430 * 108.01477 * 179.84731 * 17 16 14 19 19 N 1.39922 * 108.91646 * 0.40847 * 18 17 16 20 20 C 1.46501 * 125.74214 * 179.73864 * 19 18 17 21 21 C 1.34226 * 108.51805 * 359.73384 * 19 18 17 22 22 C 1.50699 * 126.29666 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47015 * 90.00275 * 22 21 19 24 24 C 1.38232 * 119.99708 * 269.72412 * 23 22 21 25 25 C 1.38240 * 119.99635 * 179.76568 * 24 23 22 26 26 C 1.38237 * 119.99961 * 0.50614 * 25 24 23 27 27 C 1.38233 * 119.99990 * 359.75000 * 26 25 24 28 28 C 1.38232 * 120.00073 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 31 31 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 33 33 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08003 * 125.98887 * 0.02562 * 17 16 14 36 36 H 1.09006 * 109.46844 * 269.99716 * 20 19 18 37 37 H 1.08993 * 109.47653 * 29.99484 * 20 19 18 38 38 H 1.09001 * 109.47618 * 150.00116 * 20 19 18 39 39 H 1.09002 * 109.46747 * 209.99842 * 22 21 19 40 40 H 1.08992 * 109.47519 * 329.99937 * 22 21 19 41 41 H 1.07998 * 120.00341 * 359.97438 * 24 23 22 42 42 H 1.08000 * 119.99751 * 180.23223 * 25 24 23 43 43 H 1.08003 * 119.99974 * 179.72535 * 26 25 24 44 44 H 1.07996 * 119.99862 * 179.97438 * 27 26 25 45 45 H 1.08000 * 119.99982 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7279 1.2561 15 8 -0.2278 2.7395 0.2599 16 6 0.0131 3.4083 2.4805 17 6 0.7056 3.4743 3.7109 18 7 -0.0202 4.1654 4.5457 19 7 -1.1984 4.5609 3.9027 20 6 -2.2777 5.3490 4.5029 21 6 -1.1732 4.0968 2.6435 22 6 -2.2429 4.2906 1.5998 23 6 -1.9646 5.5520 0.8235 24 6 -2.4935 6.7562 1.2488 25 6 -2.2342 7.9140 0.5394 26 6 -1.4546 7.8658 -0.6012 27 6 -0.9300 6.6607 -1.0294 28 6 -1.1846 5.5039 -0.3168 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8295 -0.0694 -2.9455 35 1 1.6683 3.0326 3.9218 36 1 -3.0050 4.6790 4.9615 37 1 -1.8643 6.0117 5.2631 38 1 -2.7670 5.9426 3.7306 39 1 -2.2457 3.4387 0.9199 40 1 -3.2150 4.3704 2.0862 41 1 -3.1066 6.7931 2.1371 42 1 -2.6444 8.8555 0.8738 43 1 -1.2557 8.7697 -1.1579 44 1 -0.3213 6.6230 -1.9207 45 1 -0.7751 4.5623 -0.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774260993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:36 Heat of formation + Delta-G solvation = -10.620252 kcal Electronic energy + Delta-G solvation = -28342.218821 eV Core-core repulsion = 24518.497999 eV Total energy + Delta-G solvation = -3823.720822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62768 -40.79369 -40.06066 -37.42807 -35.49568 -35.03386 -33.98773 -33.26519 -31.77486 -31.22929 -29.42232 -28.29584 -27.39989 -25.32120 -24.05094 -23.49376 -22.55384 -22.27025 -21.31494 -20.47749 -18.97177 -18.47091 -17.83468 -17.52156 -16.99427 -16.64383 -16.47442 -16.29421 -15.94018 -15.91175 -15.36498 -14.90209 -14.71905 -14.49498 -14.27155 -14.07763 -13.90518 -13.56686 -13.46681 -13.42289 -13.28222 -13.19924 -13.06960 -12.98052 -12.76703 -12.49662 -12.13936 -12.09379 -12.00432 -11.77344 -11.68530 -11.35498 -11.05834 -10.74638 -10.47205 -10.44112 -9.83176 -9.79579 -9.64119 -8.24204 -6.39842 0.21036 0.48430 0.52067 1.03262 1.33590 1.42642 1.43899 1.55168 2.19320 2.30798 2.49009 2.82936 3.05386 3.51494 3.55797 3.74632 3.83631 4.01261 4.11576 4.16514 4.27511 4.38311 4.41617 4.43487 4.45752 4.50052 4.57120 4.60780 4.68119 4.72288 4.76241 4.87175 4.94746 5.10771 5.14671 5.19626 5.28534 5.32129 5.46944 5.53131 5.56333 5.64901 5.70490 5.73434 5.81760 6.04570 6.12036 6.24110 6.43432 6.65865 7.15914 7.34428 8.82411 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003838 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.679298 B = 7294.440591 C = 8223.456840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.231 3.769 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.976 3.024 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.268 1.268 13 O -0.363 6.363 14 C 0.528 3.472 15 O -0.537 6.537 16 C -0.304 4.304 17 C 0.096 3.904 18 N -0.311 5.311 19 N -0.349 5.349 20 C 0.078 3.922 21 C 0.177 3.823 22 C -0.023 4.023 23 C -0.090 4.090 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.141 4.141 28 C -0.129 4.129 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.270 0.730 35 H 0.202 0.798 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.143 0.857 44 H 0.117 0.883 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 13.774 10.496 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.800 3.200 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.193 1.193 13 O -0.280 6.280 14 C 0.375 3.625 15 O -0.430 6.430 16 C -0.317 4.317 17 C -0.090 4.090 18 N -0.131 5.131 19 N -0.127 5.127 20 C -0.060 4.060 21 C 0.042 3.958 22 C -0.061 4.061 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.159 4.159 28 C -0.147 4.147 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.135 0.865 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.843 14.224 11.323 24.115 hybrid contribution 1.430 -0.898 -1.558 2.298 sum -14.413 13.326 9.765 21.924 Atomic orbital electron populations 1.21676 0.96156 1.00326 1.00203 1.21857 0.94606 0.98201 1.02056 1.20288 0.94192 0.89114 0.78607 0.97318 1.21341 0.90780 1.39622 1.06901 0.91978 1.25725 1.03894 0.93953 0.94386 1.70011 1.37216 1.37933 1.09916 0.85281 0.78169 0.79008 0.77562 1.19250 1.20228 1.19283 1.86498 1.35621 1.63388 1.42487 1.20300 0.79561 0.75510 0.87103 1.90645 1.55775 1.60469 1.36096 1.19336 1.00237 1.16814 0.95320 1.24309 0.99895 0.95149 0.89682 1.77143 0.94997 1.19707 1.21247 1.48660 1.16270 1.40267 1.07496 1.22571 0.86416 0.95897 1.01151 1.21379 0.95213 0.92059 0.87112 1.19484 0.95289 0.97702 0.93656 1.19610 0.99113 0.94810 0.95491 1.21401 1.00053 0.91160 1.00679 1.21504 0.98227 0.99302 0.94966 1.21486 0.97481 0.97574 0.97543 1.21376 1.00659 0.93405 1.00440 1.21542 0.97899 0.99173 0.96121 0.94537 0.94208 0.92374 0.89593 0.94014 0.92123 0.78135 0.87783 0.87449 0.86896 0.88421 0.85414 0.82675 0.82654 0.83967 0.86468 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.56 71.98 0.62 -5.03 16 2 C -0.13 -6.66 5.48 30.59 0.17 -6.49 16 3 C 0.23 12.87 2.25 29.85 0.07 12.94 16 4 H 0.01 0.56 7.16 -2.38 -0.02 0.54 16 5 C -0.55 -31.89 8.90 25.60 0.23 -31.67 16 6 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -52.77 11.28 21.45 0.24 -52.53 16 9 Si 0.98 43.78 29.54 68.60 2.03 45.80 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 O -0.36 -18.33 9.65 -56.60 -0.55 -18.87 16 14 C 0.53 23.51 6.41 70.20 0.45 23.96 16 15 O -0.54 -24.76 9.48 19.75 0.19 -24.57 16 16 C -0.30 -11.03 6.13 -20.16 -0.12 -11.15 16 17 C 0.10 3.17 11.87 85.67 1.02 4.18 16 18 N -0.31 -9.10 12.50 -56.24 -0.70 -9.80 16 19 N -0.35 -8.19 3.98 -354.26 -1.41 -9.60 16 20 C 0.08 0.85 11.06 127.77 1.41 2.26 16 21 C 0.18 5.00 6.24 42.17 0.26 5.26 16 22 C -0.02 -0.54 4.81 29.10 0.14 -0.40 16 23 C -0.09 -2.25 5.12 -19.86 -0.10 -2.35 16 24 C -0.12 -2.04 9.43 22.27 0.21 -1.83 16 25 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 27 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 28 C -0.13 -4.13 9.58 22.27 0.21 -3.92 16 29 H 0.04 1.58 6.06 -2.38 -0.01 1.57 16 30 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 31 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 4.81 5.94 -2.38 -0.01 4.80 16 33 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 35 H 0.20 6.11 8.06 -2.91 -0.02 6.09 16 36 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 0.68 5.32 -2.39 -0.01 0.66 16 39 H 0.10 2.89 6.45 -2.39 -0.02 2.87 16 40 H 0.13 1.83 7.64 -2.39 -0.02 1.81 16 41 H 0.16 1.42 6.11 -2.91 -0.02 1.40 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 44 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.11 4.29 5.49 -2.91 -0.02 4.28 16 Total: -1.00 -73.76 367.88 6.49 -67.28 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 1.01 Total: 22.89 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.68 Total: -20.58 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.87 Total: -71.94 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.36 Total: -43.45 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.76 6.49 -67.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774260993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.655 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds