Wall clock time and date at job start Tue Mar 31 2020 15:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47643 * 179.97438 * 16 14 13 18 18 C 1.34825 * 125.89855 * 124.70747 * 17 16 14 19 19 C 1.36428 * 107.61216 * 179.90554 * 18 17 16 20 20 C 1.48477 * 126.22392 * 180.14031 * 19 18 17 21 21 C 1.39300 * 120.11705 * 129.98678 * 20 19 18 22 22 C 1.38034 * 119.87880 * 179.69857 * 21 20 19 23 23 C 1.38311 * 120.11577 * 0.58170 * 22 21 20 24 24 C 1.38313 * 120.23937 * 359.71990 * 23 22 21 25 25 C 1.38034 * 120.11433 * 359.97438 * 24 23 22 26 26 C 1.40850 * 107.55382 * 0.36310 * 19 18 17 27 27 C 1.50698 * 125.94672 * 179.79601 * 26 19 18 28 28 N 1.30672 * 108.09840 * 359.77876 * 26 19 18 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 33 33 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 34 34 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 36 36 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 37 37 H 1.08001 * 126.18777 * 0.04650 * 18 17 16 38 38 H 1.07999 * 120.06091 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.94237 * 180.30230 * 22 21 20 40 40 H 1.08000 * 119.88419 * 179.70067 * 23 22 21 41 41 H 1.07999 * 119.94313 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.05447 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.47143 * 270.00180 * 27 26 19 44 44 H 1.08997 * 109.47675 * 30.00305 * 27 26 19 45 45 H 1.08998 * 109.46748 * 150.00491 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 7 -1.3036 4.0312 -2.2703 18 6 -1.6169 5.3295 -2.4548 19 6 -2.9307 5.4883 -2.1232 20 6 -3.7022 6.7558 -2.1770 21 6 -4.9372 6.7955 -2.8200 22 6 -5.6532 7.9749 -2.8618 23 6 -5.1408 9.1188 -2.2770 24 6 -3.9121 9.0864 -1.6427 25 6 -3.1908 7.9107 -1.5898 26 6 -3.4207 4.2323 -1.7155 27 6 -4.8253 3.9375 -1.2560 28 7 -2.4454 3.3674 -1.8055 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0608 2.9500 35 1 0.7239 4.1957 -2.7823 36 1 -0.0720 2.6967 -3.3193 37 1 -0.9492 6.1032 -2.8042 38 1 -5.3359 5.9040 -3.2812 39 1 -6.6131 8.0056 -3.3558 40 1 -5.7019 10.0408 -2.3161 41 1 -3.5167 9.9824 -1.1874 42 1 -2.2316 7.8864 -1.0939 43 1 -4.8908 4.0742 -0.1766 44 1 -5.5197 4.6164 -1.7510 45 1 -5.0815 2.9084 -1.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774261356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:09 Heat of formation + Delta-G solvation = 9.587677 kcal Electronic energy + Delta-G solvation = -27118.608483 eV Core-core repulsion = 23295.763942 eV Total energy + Delta-G solvation = -3822.844540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35985 -39.62720 -38.90388 -35.96753 -34.08100 -33.55205 -32.11554 -31.43191 -31.07304 -30.15343 -28.56346 -27.44330 -26.12614 -23.35375 -22.84472 -22.54084 -21.20164 -20.51615 -19.79819 -19.33812 -17.45723 -17.19349 -16.79158 -16.21604 -15.87618 -15.37156 -15.19719 -15.05758 -14.64712 -14.26343 -14.09600 -13.73812 -13.50200 -13.22163 -13.10350 -12.85961 -12.76698 -12.60703 -12.45066 -12.12181 -11.85352 -11.51139 -11.43916 -11.36022 -11.20346 -11.18134 -11.00693 -10.67685 -10.46359 -10.32050 -9.88261 -9.74134 -9.43015 -9.31727 -9.12542 -9.06013 -8.85281 -8.50531 -8.05414 -6.23105 -4.30853 1.08656 1.28186 1.89788 2.33689 2.76010 2.84255 3.19966 3.26610 3.30802 3.50577 3.71431 4.27495 4.47184 4.69537 4.81120 4.83392 4.85634 4.95966 5.03308 5.08776 5.10522 5.22138 5.36449 5.42748 5.54187 5.62227 5.72660 5.82001 5.85522 5.95155 6.02271 6.23848 6.29402 6.30797 6.37941 6.45260 6.51462 6.67838 6.83578 6.86944 6.90450 6.96690 7.14872 7.20532 7.56955 7.69121 7.77549 7.89161 8.10156 8.53645 8.81183 9.34504 10.83582 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.002433 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.156944 B =11503.611923 C =12138.236468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.886 5.886 9 Si 0.912 3.088 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.355 6.355 14 C 0.436 3.564 15 O -0.485 6.485 16 C 0.139 3.861 17 N -0.357 5.357 18 C 0.075 3.925 19 C -0.209 4.209 20 C 0.011 3.989 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.115 4.115 26 C 0.083 3.917 27 C -0.074 4.074 28 N -0.258 5.258 29 H 0.032 0.968 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.266 0.734 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.176 0.824 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.997 13.708 -11.284 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.272 6.272 14 C 0.275 3.725 15 O -0.372 6.372 16 C 0.016 3.984 17 N -0.137 5.137 18 C -0.071 4.071 19 C -0.220 4.220 20 C 0.010 3.990 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.085 4.085 27 C -0.132 4.132 28 N -0.079 5.079 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.151 0.849 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.616 12.269 -10.636 21.847 hybrid contribution 0.867 0.765 0.201 1.174 sum -13.749 13.034 -10.435 21.629 Atomic orbital electron populations 1.21838 0.98077 0.99027 1.00890 1.22023 0.92785 0.99183 1.03352 1.20721 0.95013 0.88792 0.78269 0.93551 1.21063 0.89533 1.39142 1.06304 0.91247 1.24902 0.99313 0.94728 0.95048 1.69908 1.35346 1.37696 1.09452 0.86220 0.83772 0.77936 0.78218 1.19474 1.20741 1.20666 1.86453 1.33484 1.62556 1.44663 1.22997 0.81730 0.78410 0.89345 1.90704 1.54689 1.56962 1.34879 1.21099 0.80653 1.00335 0.96294 1.47891 1.08786 1.06251 1.50806 1.22500 0.96365 0.86988 1.01220 1.18641 0.93586 0.93798 1.16003 1.18041 0.93580 0.90914 0.96456 1.21203 0.94573 0.98013 0.99400 1.21062 0.99743 0.92903 0.99952 1.21128 0.96291 0.98281 0.99177 1.21075 0.95116 0.97821 0.99517 1.21267 1.00245 0.92236 0.99559 1.22407 0.96266 0.90662 0.99140 1.20223 0.88634 1.02637 1.01741 1.77421 0.91399 1.20431 1.18639 0.94855 0.92950 0.94768 0.93962 0.87338 0.92374 0.84934 0.85996 0.80664 0.85984 0.86210 0.86424 0.86192 0.86082 0.90476 0.90495 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.57 37.16 0.32 -2.87 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.52 16 3 C 0.22 5.88 2.25 -27.88 -0.06 5.82 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.36 8.90 -34.44 -0.31 -14.67 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.94 11.30 55.43 0.63 -24.31 16 9 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 O -0.36 -8.06 9.81 -39.26 -0.39 -8.45 16 14 C 0.44 8.72 6.44 36.00 0.23 8.96 16 15 O -0.49 -11.37 12.84 -18.75 -0.24 -11.61 16 16 C 0.14 1.93 7.09 -5.19 -0.04 1.89 16 17 N -0.36 -5.36 3.39 -62.28 -0.21 -5.57 16 18 C 0.08 0.94 11.31 -16.89 -0.19 0.75 16 19 C -0.21 -2.71 5.58 -105.34 -0.59 -3.30 16 20 C 0.01 0.13 5.61 -104.89 -0.59 -0.46 16 21 C -0.11 -1.10 8.56 -39.26 -0.34 -1.44 16 22 C -0.12 -1.00 10.03 -39.63 -0.40 -1.39 16 23 C -0.13 -1.08 10.04 -39.53 -0.40 -1.47 16 24 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 25 C -0.11 -1.19 9.70 -39.26 -0.38 -1.57 16 26 C 0.08 1.21 7.23 -82.10 -0.59 0.62 16 27 C -0.07 -0.83 10.26 36.00 0.37 -0.46 16 28 N -0.26 -4.46 11.60 33.84 0.39 -4.06 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 1.26 7.80 -51.93 -0.40 0.85 16 31 H 0.03 0.75 6.06 -51.93 -0.31 0.44 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.13 1.31 8.07 -51.93 -0.42 0.89 16 36 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.06 7.12 -52.49 -0.37 0.69 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.69 5.86 -51.93 -0.30 0.39 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -33.44 377.31 -9.02 -42.46 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.27 Total: 3.05 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.60 Total: -12.95 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.81 Total: -33.95 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.63 Total: -20.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.44 -9.02 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774261356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.051 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds