Wall clock time and date at job start Tue Mar 31 2020 15:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47643 * 179.97438 * 16 14 13 18 18 C 1.34825 * 125.89855 * 124.70747 * 17 16 14 19 19 C 1.36428 * 107.61216 * 179.90554 * 18 17 16 20 20 C 1.48477 * 126.22392 * 180.14031 * 19 18 17 21 21 C 1.39300 * 120.11705 * 129.98678 * 20 19 18 22 22 C 1.38034 * 119.87880 * 179.69857 * 21 20 19 23 23 C 1.38311 * 120.11577 * 0.58170 * 22 21 20 24 24 C 1.38313 * 120.23937 * 359.71990 * 23 22 21 25 25 C 1.38034 * 120.11433 * 359.97438 * 24 23 22 26 26 C 1.40850 * 107.55382 * 0.36310 * 19 18 17 27 27 C 1.50698 * 125.94672 * 179.79601 * 26 19 18 28 28 N 1.30672 * 108.09840 * 359.77876 * 26 19 18 29 29 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 31 31 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 32 32 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 33 33 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 34 34 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 36 36 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 37 37 H 1.08001 * 126.18777 * 0.04650 * 18 17 16 38 38 H 1.07999 * 120.06091 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.94237 * 180.30230 * 22 21 20 40 40 H 1.08000 * 119.88419 * 179.70067 * 23 22 21 41 41 H 1.07999 * 119.94313 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.05447 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.47143 * 270.00180 * 27 26 19 44 44 H 1.08997 * 109.47675 * 30.00305 * 27 26 19 45 45 H 1.08998 * 109.46748 * 150.00491 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 7 -1.3036 4.0312 -2.2703 18 6 -1.6169 5.3295 -2.4548 19 6 -2.9307 5.4883 -2.1232 20 6 -3.7022 6.7558 -2.1770 21 6 -4.9372 6.7955 -2.8200 22 6 -5.6532 7.9749 -2.8618 23 6 -5.1408 9.1188 -2.2770 24 6 -3.9121 9.0864 -1.6427 25 6 -3.1908 7.9107 -1.5898 26 6 -3.4207 4.2323 -1.7155 27 6 -4.8253 3.9375 -1.2560 28 7 -2.4454 3.3674 -1.8055 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0608 2.9500 35 1 0.7239 4.1957 -2.7823 36 1 -0.0720 2.6967 -3.3193 37 1 -0.9492 6.1032 -2.8042 38 1 -5.3359 5.9040 -3.2812 39 1 -6.6131 8.0056 -3.3558 40 1 -5.7019 10.0408 -2.3161 41 1 -3.5167 9.9824 -1.1874 42 1 -2.2316 7.8864 -1.0939 43 1 -4.8908 4.0742 -0.1766 44 1 -5.5197 4.6164 -1.7510 45 1 -5.0815 2.9084 -1.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774261356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:08 Heat of formation + Delta-G solvation = -7.915461 kcal Electronic energy + Delta-G solvation = -27119.367476 eV Core-core repulsion = 23295.763942 eV Total energy + Delta-G solvation = -3823.603533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41521 -41.27343 -39.64351 -37.74493 -35.56701 -35.14482 -33.41039 -32.96166 -31.82126 -31.18993 -29.47897 -29.37657 -27.31879 -25.24090 -23.79799 -23.26724 -22.74422 -21.55897 -21.39796 -20.56006 -19.02813 -18.63627 -18.17483 -17.53299 -17.17070 -17.02736 -16.41434 -16.01508 -15.89668 -15.47486 -15.09042 -14.89227 -14.77731 -14.55162 -14.21805 -14.09674 -13.88191 -13.79460 -13.44373 -13.39423 -13.29984 -13.16685 -13.05073 -12.99511 -12.84277 -12.59029 -12.19930 -12.14634 -11.86514 -11.80724 -11.56058 -11.44311 -11.31724 -10.85867 -10.56783 -10.28463 -10.13185 -9.74202 -8.94858 -8.29941 -6.47319 0.33287 0.59972 0.85666 1.27592 1.30290 1.41179 1.41549 1.55470 1.78774 2.01935 2.39102 2.99833 3.00202 3.50913 3.78766 3.85715 3.97167 4.08853 4.10010 4.17302 4.23841 4.31387 4.33855 4.35106 4.39509 4.52266 4.68011 4.70361 4.73421 4.78349 4.89256 4.94776 4.99244 5.03558 5.16601 5.22549 5.26553 5.31847 5.48787 5.54805 5.62504 5.71343 5.72664 5.80923 5.93693 5.96305 6.08155 6.20303 6.58598 6.72464 6.93095 7.24332 8.77057 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.002433 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.156944 B =11503.611923 C =12138.236468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.128 4.128 3 C 0.229 3.771 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.983 3.017 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.273 1.273 13 O -0.359 6.359 14 C 0.429 3.571 15 O -0.525 6.525 16 C 0.149 3.851 17 N -0.370 5.370 18 C 0.077 3.923 19 C -0.215 4.215 20 C -0.007 4.007 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.128 4.128 26 C 0.073 3.927 27 C -0.073 4.073 28 N -0.315 5.315 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.270 0.730 35 H 0.179 0.821 36 H 0.148 0.852 37 H 0.213 0.787 38 H 0.127 0.873 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 15.471 -13.072 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.806 3.194 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.198 1.198 13 O -0.275 6.275 14 C 0.271 3.729 15 O -0.413 6.413 16 C 0.027 3.973 17 N -0.151 5.151 18 C -0.067 4.067 19 C -0.226 4.226 20 C -0.008 4.008 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.094 4.094 27 C -0.131 4.131 28 N -0.136 5.136 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.196 0.804 36 H 0.166 0.834 37 H 0.230 0.770 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.137 0.863 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.739 14.048 -12.448 23.865 hybrid contribution 0.767 0.327 0.760 1.128 sum -13.972 14.375 -11.688 23.205 Atomic orbital electron populations 1.21655 0.96474 1.00258 0.99791 1.21865 0.94084 0.98287 1.02403 1.20344 0.94586 0.89066 0.78409 0.98002 1.21364 0.90280 1.39875 1.06914 0.91128 1.25853 1.04365 0.93901 0.94388 1.70041 1.37468 1.38018 1.09931 0.85133 0.77540 0.78289 0.78442 1.18413 1.20335 1.19810 1.86435 1.35313 1.63092 1.42650 1.24272 0.80151 0.77400 0.91088 1.90692 1.55347 1.58256 1.37050 1.21375 0.81184 1.01875 0.92862 1.47980 1.08476 1.07048 1.51575 1.23143 0.96948 0.86626 1.00020 1.18938 0.94112 0.94049 1.15494 1.18063 0.94358 0.90377 0.98030 1.21333 0.94217 0.98925 0.99358 1.21375 1.00480 0.92357 0.99529 1.21487 0.96048 0.99245 0.98055 1.21337 0.95364 0.97920 0.99438 1.21356 1.00598 0.92695 0.99986 1.22947 0.96883 0.91233 0.98370 1.20316 0.87754 1.03341 1.01690 1.77334 0.92818 1.22465 1.20964 0.92309 0.95305 0.94526 0.93260 0.89684 0.92086 0.80353 0.83445 0.77038 0.85470 0.83845 0.83989 0.84434 0.86325 0.90753 0.88254 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.57 71.98 0.62 -5.14 16 2 C -0.13 -6.57 5.49 30.60 0.17 -6.40 16 3 C 0.23 12.45 2.25 29.85 0.07 12.52 16 4 H 0.00 0.14 7.16 -2.39 -0.02 0.12 16 5 C -0.55 -30.62 8.90 25.60 0.23 -30.39 16 6 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -52.85 11.30 21.45 0.24 -52.61 16 9 Si 0.98 42.56 29.54 68.60 2.03 44.59 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 13 O -0.36 -16.51 9.81 -51.43 -0.50 -17.02 16 14 C 0.43 17.37 6.44 71.23 0.46 17.83 16 15 O -0.52 -25.58 12.84 21.96 0.28 -25.30 16 16 C 0.15 3.90 7.09 85.63 0.61 4.51 16 17 N -0.37 -10.83 3.39 -350.95 -1.19 -12.02 16 18 C 0.08 1.83 11.31 83.81 0.95 2.78 16 19 C -0.21 -5.45 5.58 -20.33 -0.11 -5.56 16 20 C -0.01 -0.15 5.61 -20.04 -0.11 -0.26 16 21 C -0.12 -2.13 8.56 22.48 0.19 -1.93 16 22 C -0.12 -1.69 10.03 22.24 0.22 -1.47 16 23 C -0.13 -1.78 10.04 22.30 0.22 -1.56 16 24 C -0.12 -1.92 10.03 22.24 0.22 -1.70 16 25 C -0.13 -2.49 9.70 22.48 0.22 -2.28 16 26 C 0.07 2.15 7.23 43.37 0.31 2.47 16 27 C -0.07 -1.64 10.26 71.24 0.73 -0.91 16 28 N -0.31 -11.04 11.60 -46.85 -0.54 -11.58 16 29 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.03 1.43 7.80 -2.39 -0.02 1.41 16 31 H 0.04 1.64 6.06 -2.39 -0.01 1.63 16 32 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 4.77 5.95 -2.39 -0.01 4.76 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.77 16 35 H 0.18 2.95 8.07 -2.38 -0.02 2.93 16 36 H 0.15 3.12 8.14 -2.38 -0.02 3.10 16 37 H 0.21 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.13 2.02 7.12 -2.91 -0.02 2.00 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.10 1.71 5.86 -2.39 -0.01 1.70 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.18 377.31 6.75 -69.43 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.99 Total: 20.77 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 5.44 Total: -16.26 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.49 Total: -76.21 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.22 Total: -42.32 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -76.18 6.75 -69.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774261356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.515 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds