Wall clock time and date at job start Tue Mar 31 2020 15:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46832 * 180.02562 * 16 14 13 18 18 C 1.34829 * 125.89200 * 124.71657 * 17 16 14 19 19 C 1.36435 * 107.60521 * 179.89863 * 18 17 16 20 20 C 1.48482 * 126.21855 * 180.13945 * 19 18 17 21 21 C 1.39298 * 120.11678 * 129.99115 * 20 19 18 22 22 C 1.38030 * 119.87770 * 179.69794 * 21 20 19 23 23 C 1.38314 * 120.11929 * 0.57545 * 22 21 20 24 24 C 1.38322 * 120.23522 * 359.72457 * 23 22 21 25 25 C 1.38025 * 120.11398 * 359.97438 * 24 23 22 26 26 C 1.40838 * 107.55757 * 0.36032 * 19 18 17 27 27 C 1.50704 * 125.95105 * 179.79757 * 26 19 18 28 28 N 1.30674 * 108.09841 * 359.77586 * 26 19 18 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 36 36 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 37 37 H 1.07997 * 126.19269 * 0.03683 * 18 17 16 38 38 H 1.08001 * 120.06035 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.93744 * 180.29345 * 22 21 20 40 40 H 1.08001 * 119.88498 * 179.69469 * 23 22 21 41 41 H 1.07992 * 119.93969 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.05609 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47182 * 270.00399 * 27 26 19 44 44 H 1.09002 * 109.46879 * 29.99880 * 27 26 19 45 45 H 1.09000 * 109.46973 * 149.99999 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 7 -1.3032 4.0319 2.2701 18 6 -2.4183 3.8185 2.9972 19 6 -3.4168 4.5718 2.4522 20 6 -4.8194 4.6496 2.9332 21 6 -5.4178 5.8895 3.1453 22 6 -6.7240 5.9561 3.5864 23 6 -7.4347 4.7946 3.8293 24 6 -6.8432 3.5608 3.6262 25 6 -5.5397 3.4829 3.1793 26 6 -2.8765 5.2581 1.3474 27 6 -3.6227 6.2043 0.4424 28 7 -1.6154 4.9319 1.2440 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 -0.0711 2.6983 3.3195 36 1 0.7246 4.1967 2.7811 37 1 -2.5048 3.1706 3.8569 38 1 -4.8622 6.7970 2.9606 39 1 -7.1904 6.9169 3.7467 40 1 -8.4549 4.8511 4.1791 41 1 -7.4026 2.6570 3.8169 42 1 -5.0789 2.5191 3.0207 43 1 -4.0564 5.6469 -0.3878 44 1 -4.4171 6.6946 1.0051 45 1 -2.9344 6.9557 0.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774261357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:14 Heat of formation + Delta-G solvation = 19.415799 kcal Electronic energy + Delta-G solvation = -27238.523964 eV Core-core repulsion = 23416.105603 eV Total energy + Delta-G solvation = -3822.418361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44219 -39.86612 -38.96975 -36.23416 -34.18404 -33.66619 -32.17669 -31.99462 -31.14323 -30.25884 -28.62885 -27.94824 -26.28747 -23.20305 -22.80144 -22.59109 -21.60805 -20.60681 -20.06623 -19.49313 -17.66179 -17.42006 -16.77278 -16.42407 -15.97953 -15.89327 -15.20671 -15.14137 -14.66610 -14.44125 -14.16879 -13.79603 -13.56050 -13.53578 -13.19247 -13.12367 -12.87592 -12.65033 -12.52304 -12.21562 -12.17672 -11.99883 -11.76367 -11.55948 -11.48156 -11.29557 -11.23085 -10.81687 -10.53289 -10.15685 -10.03610 -9.69519 -9.63186 -9.37839 -9.21375 -9.14059 -9.11137 -8.70998 -8.12148 -6.28072 -4.30897 1.03073 1.23137 1.81825 2.24157 2.64787 2.69412 3.14144 3.27450 3.29063 3.32005 3.66092 4.21681 4.38070 4.62170 4.76093 4.76491 4.79212 4.89308 4.97695 5.00710 5.04911 5.13390 5.25256 5.31815 5.37416 5.56899 5.66371 5.72299 5.76581 5.79028 5.82879 5.89683 5.90231 5.96241 6.24222 6.33005 6.35520 6.45641 6.48320 6.56596 6.61277 6.65582 6.81294 6.84348 6.96928 7.28541 7.44201 7.70301 8.13924 8.47960 8.78193 9.28515 10.83764 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002517 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.074190 B =11120.182699 C =11345.803832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.047 0.953 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.289 1.289 13 O -0.340 6.340 14 C 0.436 3.564 15 O -0.486 6.486 16 C 0.141 3.859 17 N -0.358 5.358 18 C 0.075 3.925 19 C -0.207 4.207 20 C 0.010 3.990 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.115 4.115 26 C 0.084 3.916 27 C -0.074 4.074 28 N -0.259 5.259 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.177 0.823 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.099 7.318 11.958 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.065 0.935 5 C -0.564 4.564 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.185 1.185 12 H -0.216 1.216 13 O -0.255 6.255 14 C 0.276 3.724 15 O -0.373 6.373 16 C 0.018 3.982 17 N -0.139 5.139 18 C -0.071 4.071 19 C -0.219 4.219 20 C 0.009 3.991 21 C -0.131 4.131 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.084 4.084 27 C -0.133 4.133 28 N -0.079 5.079 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.194 0.806 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.827 7.323 10.879 25.463 hybrid contribution -1.063 -0.889 -0.349 1.430 sum -22.890 6.434 10.530 26.004 Atomic orbital electron populations 1.21876 0.97001 0.99981 1.01611 1.22374 0.94264 0.99587 1.02328 1.21003 0.96378 0.87966 0.79994 0.93499 1.20770 0.87582 1.40105 1.07977 0.89421 1.24726 0.94958 0.95248 0.97328 1.69830 1.08467 1.44159 1.29806 0.87007 0.81040 0.80080 0.81370 1.19907 1.18539 1.21581 1.86477 1.33723 1.62431 1.42901 1.23130 0.81598 0.77985 0.89678 1.90700 1.55172 1.56694 1.34775 1.21078 0.82413 0.98923 0.95804 1.47882 1.08172 1.34963 1.22860 1.22500 0.85886 1.00388 0.98325 1.18649 0.93863 1.07623 1.01746 1.18038 0.90888 0.92973 0.97179 1.21209 0.95028 0.97119 0.99793 1.21070 0.94484 0.98333 0.99728 1.21139 0.99881 0.92652 1.01152 1.21072 0.95095 0.97719 0.99656 1.21249 0.94384 0.97872 0.99818 1.22420 0.91561 0.98379 0.96020 1.20233 0.98800 0.96769 0.97488 1.77439 1.15296 1.08010 1.07188 0.93893 0.93897 0.92595 0.91687 0.91155 0.91988 0.84818 0.85563 0.80638 0.85949 0.86168 0.86392 0.86195 0.86141 0.90487 0.90447 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.57 37.16 0.32 -2.55 16 2 C -0.15 -3.29 5.15 -26.73 -0.14 -3.42 16 3 C 0.20 4.93 1.84 -27.88 -0.05 4.88 16 4 H 0.05 1.25 6.21 -51.93 -0.32 0.93 16 5 C -0.53 -14.86 9.48 -34.44 -0.33 -15.18 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 9 Si 0.88 21.58 24.41 -169.99 -4.15 17.43 16 10 H -0.27 -6.41 6.83 56.52 0.39 -6.03 16 11 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 O -0.34 -7.32 9.81 -39.27 -0.39 -7.71 16 14 C 0.44 8.20 6.44 36.01 0.23 8.43 16 15 O -0.49 -10.65 12.84 -18.75 -0.24 -10.89 16 16 C 0.14 1.82 7.09 -5.19 -0.04 1.78 16 17 N -0.36 -5.08 3.39 -62.28 -0.21 -5.29 16 18 C 0.07 0.87 11.31 -16.89 -0.19 0.68 16 19 C -0.21 -2.55 5.58 -105.34 -0.59 -3.13 16 20 C 0.01 0.11 5.61 -104.89 -0.59 -0.48 16 21 C -0.11 -1.04 8.56 -39.26 -0.34 -1.38 16 22 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 23 C -0.13 -1.01 10.04 -39.52 -0.40 -1.41 16 24 C -0.12 -0.98 10.04 -39.63 -0.40 -1.37 16 25 C -0.11 -1.11 9.70 -39.27 -0.38 -1.49 16 26 C 0.08 1.18 7.23 -82.10 -0.59 0.58 16 27 C -0.07 -0.80 10.26 36.01 0.37 -0.43 16 28 N -0.26 -4.31 11.60 33.84 0.39 -3.92 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.80 6.06 -51.93 -0.31 0.48 16 31 H 0.05 1.16 7.80 -51.93 -0.40 0.76 16 32 H 0.07 1.51 3.22 -51.93 -0.17 1.34 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.13 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.13 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 1.01 7.12 -52.49 -0.37 0.64 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.66 5.86 -51.93 -0.30 0.36 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -34.59 370.54 -7.98 -42.57 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.14 Total: 1.51 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.60 Total: -13.64 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.95 Total: -34.85 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.63 Total: -18.59 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.59 -7.98 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774261357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.982 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds