Wall clock time and date at job start Tue Mar 31 2020 15:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 O 1.45208 * 109.46705 * 65.00425 * 3 2 1 14 14 C 1.34234 * 116.99771 * 269.99740 * 13 3 2 15 15 O 1.20824 * 119.99750 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99896 * 180.02562 * 14 13 3 17 17 N 1.46502 * 109.46832 * 180.02562 * 16 14 13 18 18 C 1.34829 * 125.89200 * 124.71657 * 17 16 14 19 19 C 1.36435 * 107.60521 * 179.89863 * 18 17 16 20 20 C 1.48482 * 126.21855 * 180.13945 * 19 18 17 21 21 C 1.39298 * 120.11678 * 129.99115 * 20 19 18 22 22 C 1.38030 * 119.87770 * 179.69794 * 21 20 19 23 23 C 1.38314 * 120.11929 * 0.57545 * 22 21 20 24 24 C 1.38322 * 120.23522 * 359.72457 * 23 22 21 25 25 C 1.38025 * 120.11398 * 359.97438 * 24 23 22 26 26 C 1.40838 * 107.55757 * 0.36032 * 19 18 17 27 27 C 1.50704 * 125.95105 * 179.79757 * 26 19 18 28 28 N 1.30674 * 108.09841 * 359.77586 * 26 19 18 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 32 32 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 33 33 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 34 34 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.46766 * 300.00081 * 16 14 13 36 36 H 1.09000 * 109.46689 * 60.00007 * 16 14 13 37 37 H 1.07997 * 126.19269 * 0.03683 * 18 17 16 38 38 H 1.08001 * 120.06035 * 359.97438 * 21 20 19 39 39 H 1.08000 * 119.93744 * 180.29345 * 22 21 20 40 40 H 1.08001 * 119.88498 * 179.69469 * 23 22 21 41 41 H 1.07992 * 119.93969 * 180.02562 * 24 23 22 42 42 H 1.08003 * 120.05609 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47182 * 270.00399 * 27 26 19 44 44 H 1.09002 * 109.46879 * 29.99880 * 27 26 19 45 45 H 1.09000 * 109.46973 * 149.99999 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7254 1.2561 15 8 -0.2192 2.7369 0.2657 16 6 0.0075 3.4224 2.5086 17 7 -1.3032 4.0319 2.2701 18 6 -2.4183 3.8185 2.9972 19 6 -3.4168 4.5718 2.4522 20 6 -4.8194 4.6496 2.9332 21 6 -5.4178 5.8895 3.1453 22 6 -6.7240 5.9561 3.5864 23 6 -7.4347 4.7946 3.8293 24 6 -6.8432 3.5608 3.6262 25 6 -5.5397 3.4829 3.1793 26 6 -2.8765 5.2581 1.3474 27 6 -3.6227 6.2043 0.4424 28 7 -1.6154 4.9319 1.2440 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.8770 0.4827 -2.1133 35 1 -0.0711 2.6983 3.3195 36 1 0.7246 4.1967 2.7811 37 1 -2.5048 3.1706 3.8569 38 1 -4.8622 6.7970 2.9606 39 1 -7.1904 6.9169 3.7467 40 1 -8.4549 4.8511 4.1791 41 1 -7.4026 2.6570 3.8169 42 1 -5.0789 2.5191 3.0207 43 1 -4.0564 5.6469 -0.3878 44 1 -4.4171 6.6946 1.0051 45 1 -2.9344 6.9557 0.0554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774261357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:13 Heat of formation + Delta-G solvation = -0.633874 kcal Electronic energy + Delta-G solvation = -27239.393383 eV Core-core repulsion = 23416.105603 eV Total energy + Delta-G solvation = -3823.287780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43633 -41.40713 -39.64420 -37.89783 -35.61014 -35.15703 -33.97191 -32.96416 -31.82595 -31.20970 -29.81839 -29.48118 -27.37417 -24.90573 -23.84509 -23.28144 -23.00444 -21.68998 -21.42786 -20.59329 -19.34099 -18.69911 -18.21034 -17.65415 -17.54530 -17.03429 -16.38628 -16.03795 -15.89112 -15.49887 -15.39400 -15.05506 -14.77990 -14.64226 -14.25420 -14.18149 -13.97522 -13.90299 -13.74560 -13.56862 -13.41751 -13.25456 -13.18053 -13.06842 -12.99698 -12.63760 -12.19952 -12.08317 -11.86247 -11.71774 -11.58715 -11.45360 -11.32405 -11.18170 -10.78399 -10.29500 -10.13322 -9.73802 -8.94790 -8.48690 -6.56831 0.33505 0.60451 0.84390 1.17129 1.19380 1.26670 1.27749 1.35593 1.78608 1.94741 2.14812 2.83437 3.00427 3.48530 3.64997 3.84152 3.94174 4.03468 4.09256 4.09559 4.12879 4.17171 4.22779 4.24276 4.33700 4.39829 4.51999 4.68280 4.70628 4.72913 4.87415 4.88817 4.89566 4.94707 4.95828 4.98897 5.22755 5.26900 5.26931 5.30820 5.54450 5.60029 5.71494 5.72891 5.80773 5.95718 6.11422 6.20595 6.47582 6.71826 6.82342 7.07755 8.66992 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002517 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.074190 B =11120.182699 C =11345.803832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.205 3.795 4 H 0.023 0.977 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.033 3.967 8 N -0.927 5.927 9 Si 0.935 3.065 10 H -0.248 1.248 11 H -0.262 1.262 12 H -0.284 1.284 13 O -0.348 6.348 14 C 0.432 3.568 15 O -0.520 6.520 16 C 0.149 3.851 17 N -0.369 5.369 18 C 0.081 3.919 19 C -0.214 4.214 20 C -0.007 4.007 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.126 4.126 26 C 0.075 3.925 27 C -0.074 4.074 28 N -0.319 5.319 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.275 0.725 35 H 0.185 0.815 36 H 0.144 0.856 37 H 0.216 0.784 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.241 6.512 13.451 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.182 4.182 3 C 0.151 3.849 4 H 0.040 0.960 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.167 4.167 8 N -0.565 5.565 9 Si 0.761 3.239 10 H -0.173 1.173 11 H -0.187 1.187 12 H -0.211 1.211 13 O -0.264 6.264 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.027 3.973 17 N -0.151 5.151 18 C -0.064 4.064 19 C -0.225 4.225 20 C -0.008 4.008 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.093 4.093 27 C -0.132 4.132 28 N -0.140 5.140 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.202 0.798 36 H 0.162 0.838 37 H 0.232 0.768 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.989 6.525 12.397 28.648 hybrid contribution -0.148 -0.519 -0.714 0.895 sum -25.137 6.007 11.682 28.363 Atomic orbital electron populations 1.21766 0.94670 1.01871 1.01067 1.22259 0.96252 0.97332 1.02367 1.20611 0.93912 0.89702 0.80710 0.95971 1.20975 0.89627 1.39801 1.07268 0.93123 1.25509 0.96027 0.95669 0.99538 1.69947 1.10208 1.45408 1.30954 0.86051 0.79083 0.80387 0.78390 1.17310 1.18719 1.21096 1.86460 1.35741 1.63067 1.41127 1.24300 0.80021 0.76923 0.91392 1.90687 1.55760 1.57737 1.36619 1.21372 0.82580 0.99868 0.93500 1.47961 1.08993 1.35041 1.23071 1.23154 0.84650 1.00017 0.98571 1.18928 0.94991 1.07402 1.01214 1.18061 0.90272 0.93901 0.98585 1.21330 0.95733 0.96849 1.00047 1.21363 0.93993 0.99581 0.98914 1.21488 1.00919 0.92318 1.00170 1.21343 0.94716 0.98877 0.99101 1.21358 0.95096 0.97672 1.00285 1.22928 0.91223 0.98455 0.96664 1.20321 0.99097 0.96391 0.97386 1.77357 1.16980 1.10202 1.09460 0.90659 0.93260 0.94375 0.92495 0.90178 0.91520 0.79817 0.83818 0.76793 0.85637 0.84033 0.84092 0.84357 0.85992 0.90586 0.88331 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 8.57 71.98 0.62 -4.44 16 2 C -0.14 -6.26 5.15 30.60 0.16 -6.10 16 3 C 0.21 10.24 1.84 29.85 0.05 10.29 16 4 H 0.02 1.22 6.21 -2.39 -0.01 1.21 16 5 C -0.54 -31.43 9.48 25.60 0.24 -31.18 16 6 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 7 C 0.03 1.90 5.45 84.65 0.46 2.36 16 8 N -0.93 -56.66 13.96 21.45 0.30 -56.36 16 9 Si 0.94 44.76 24.41 68.60 1.67 46.44 16 10 H -0.25 -10.86 6.83 99.48 0.68 -10.18 16 11 H -0.26 -12.55 6.53 99.48 0.65 -11.90 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 O -0.35 -15.08 9.81 -51.46 -0.50 -15.58 16 14 C 0.43 16.04 6.44 71.24 0.46 16.50 16 15 O -0.52 -22.95 12.84 21.97 0.28 -22.66 16 16 C 0.15 3.57 7.09 85.63 0.61 4.18 16 17 N -0.37 -10.00 3.39 -350.95 -1.19 -11.19 16 18 C 0.08 1.71 11.31 83.81 0.95 2.66 16 19 C -0.21 -5.01 5.58 -20.33 -0.11 -5.13 16 20 C -0.01 -0.14 5.61 -20.04 -0.11 -0.25 16 21 C -0.12 -2.02 8.56 22.48 0.19 -1.83 16 22 C -0.12 -1.60 10.03 22.24 0.22 -1.38 16 23 C -0.13 -1.65 10.04 22.31 0.22 -1.42 16 24 C -0.12 -1.72 10.04 22.24 0.22 -1.50 16 25 C -0.13 -2.19 9.70 22.47 0.22 -1.97 16 26 C 0.07 2.08 7.23 43.37 0.31 2.39 16 27 C -0.07 -1.58 10.26 71.24 0.73 -0.85 16 28 N -0.32 -10.70 11.60 -46.85 -0.54 -11.24 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 1.73 6.06 -2.39 -0.01 1.72 16 31 H 0.04 1.53 7.80 -2.39 -0.02 1.51 16 32 H 0.06 2.54 3.22 -2.38 -0.01 2.54 16 33 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 34 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.18 2.47 8.07 -2.39 -0.02 2.45 16 36 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.22 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.13 1.91 7.12 -2.91 -0.02 1.89 16 39 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 1.61 5.86 -2.39 -0.01 1.60 16 45 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.73 370.54 6.38 -72.35 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.92 Total: 15.92 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 5.45 Total: -17.66 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.43 Total: -78.80 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.22 Total: -38.25 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.67 Total: 46.44 kcal Total: -78.73 6.38 -72.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774261357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.712 kcal (2) G-P(sol) polarization free energy of solvation -78.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds