Wall clock time and date at job start Tue Mar 31 2020 16:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 N 1.46500 * 109.46793 * 240.00472 * 2 1 3 5 5 C 1.34950 * 126.03650 * 84.71167 * 4 2 1 6 6 C 1.35319 * 107.74435 * 179.84075 * 5 4 2 7 7 C 1.39871 * 107.92209 * 0.42244 * 6 5 4 8 8 C 1.50696 * 125.90244 * 179.71242 * 7 6 5 9 9 C 1.50702 * 109.46795 * 125.00348 * 8 7 6 10 10 O 1.20819 * 120.00279 * 0.02562 * 9 8 7 11 11 O 1.34237 * 119.99869 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99988 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.46793 * 179.97438 * 12 11 9 14 14 C 1.38639 * 119.74701 * 269.72397 * 13 12 11 15 15 C 1.37615 * 120.24462 * 179.72708 * 14 13 12 16 16 C 1.40718 * 119.74921 * 0.56841 * 15 14 13 17 17 C 1.41393 * 120.24515 * 179.68732 * 16 15 14 18 18 H 1.08000 * 119.99583 * 204.40427 * 17 16 15 19 19 C 1.39947 * 120.00280 * 24.40350 * 17 16 15 20 20 N 1.30822 * 119.99933 * 17.84432 * 19 17 16 21 21 Si 1.86800 * 119.99767 * 197.85126 * 19 17 16 22 22 H 1.48501 * 109.47312 * 89.99949 * 21 19 17 23 23 H 1.48502 * 109.46736 * 209.99587 * 21 19 17 24 24 H 1.48496 * 109.47307 * 329.99889 * 21 19 17 25 25 C 1.40711 * 119.50851 * 359.70121 * 16 15 14 26 26 C 1.37616 * 119.74633 * 0.02562 * 25 16 15 27 27 N 1.30842 * 108.19994 * 359.74075 * 7 6 5 28 28 H 1.09004 * 109.46808 * 299.99262 * 1 2 3 29 29 H 1.09001 * 109.47726 * 59.99339 * 1 2 3 30 30 H 1.09004 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47446 * 120.00205 * 2 1 3 32 32 H 1.09001 * 109.47293 * 300.00925 * 3 2 1 33 33 H 1.09004 * 109.46610 * 60.00617 * 3 2 1 34 34 H 1.08997 * 109.47325 * 180.02562 * 3 2 1 35 35 H 1.07996 * 126.13031 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.04285 * 180.16583 * 6 5 4 37 37 H 1.08992 * 109.47676 * 245.00810 * 8 7 6 38 38 H 1.09000 * 109.46899 * 5.00934 * 8 7 6 39 39 H 1.09005 * 109.46684 * 299.99239 * 12 11 9 40 40 H 1.09001 * 109.46992 * 59.99343 * 12 11 9 41 41 H 1.07997 * 119.87790 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12610 * 180.27520 * 15 14 13 43 43 H 0.96995 * 119.99794 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.13161 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.88156 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1880 -0.1404 -2.4168 6 6 2.6565 -1.1049 -3.2423 7 6 2.7679 -2.2872 -2.5033 8 6 3.2453 -3.6163 -3.0292 9 6 4.3910 -4.1090 -2.1832 10 8 4.7797 -3.4488 -1.2489 11 8 4.9797 -5.2813 -2.4677 12 6 6.0766 -5.6934 -1.6101 13 6 6.6081 -7.0234 -2.0786 14 6 6.0765 -8.1962 -1.5648 15 6 6.5503 -9.4164 -1.9896 16 6 7.5865 -9.4707 -2.9402 17 6 8.0857 -10.7186 -3.3790 18 1 9.0884 -10.7904 -3.7739 19 6 7.2807 -11.8607 -3.3017 20 7 5.9854 -11.7399 -3.1637 21 14 8.0558 -13.5578 -3.3954 22 1 8.4085 -14.0170 -2.0279 23 1 7.0916 -14.5093 -4.0038 24 1 9.2833 -13.4960 -4.2288 25 6 8.1222 -8.2738 -3.4506 26 6 7.6291 -7.0649 -3.0156 27 7 2.3856 -2.0400 -1.2767 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.9888 0.8864 -2.6858 36 1 2.8974 -0.9842 -4.2882 37 1 2.4286 -4.3370 -2.9902 38 1 3.5787 -3.5004 -4.0604 39 1 6.8713 -4.9485 -1.6535 40 1 5.7207 -5.7857 -0.5840 41 1 5.2850 -8.1521 -0.8315 42 1 6.1318 -10.3289 -1.5913 43 1 5.4274 -12.5315 -3.1104 44 1 8.9179 -8.3037 -4.1802 45 1 8.0389 -6.1449 -3.4056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:01 Heat of formation + Delta-G solvation = -0.891244 kcal Electronic energy + Delta-G solvation = -25998.806374 eV Core-core repulsion = 22175.507434 eV Total energy + Delta-G solvation = -3823.298940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43350 -39.86430 -37.64584 -36.34037 -35.75847 -33.82999 -32.23649 -30.73492 -30.09285 -29.33561 -28.49664 -27.76118 -26.95713 -23.91894 -23.04704 -21.35861 -21.04100 -20.30584 -19.99295 -19.50632 -17.36596 -17.32478 -17.22906 -16.09262 -16.06102 -15.44261 -15.30975 -14.76945 -14.35326 -14.19435 -13.94533 -13.76729 -13.68456 -13.18220 -13.07948 -12.85625 -12.65922 -12.55554 -12.44307 -12.18645 -11.98209 -11.92401 -11.76540 -11.68801 -11.51623 -11.16891 -10.96547 -10.78116 -10.64368 -10.41386 -10.12991 -10.03318 -9.65576 -9.43113 -9.33974 -9.19556 -8.67489 -7.52683 -7.41499 -6.83535 -4.43353 1.79223 2.27555 2.43602 2.60490 2.69894 3.03042 3.03569 3.07038 3.07747 3.55274 3.88064 4.09298 4.42397 4.50967 4.54485 4.60292 4.63507 4.98290 4.99181 5.19162 5.19696 5.25919 5.36479 5.40333 5.49351 5.58990 5.66313 5.67597 5.72917 5.74994 5.78109 5.91560 6.14987 6.29800 6.35733 6.51855 6.90182 6.91837 6.99433 7.00891 7.22198 7.30268 7.55265 7.66666 7.77973 7.99087 8.05222 8.22186 8.22693 8.57298 8.81767 8.90258 10.10298 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.001816 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.356843 B =15414.747959 C =15590.760869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 C -0.164 4.164 4 N -0.366 5.366 5 C 0.050 3.950 6 C -0.263 4.263 7 C 0.077 3.923 8 C -0.034 4.034 9 C 0.457 3.543 10 O -0.506 6.506 11 O -0.351 6.351 12 C 0.138 3.862 13 C -0.234 4.234 14 C -0.076 4.076 15 C -0.171 4.171 16 C 0.117 3.883 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.064 4.064 27 N -0.262 5.262 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.282 0.718 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 20.727 2.087 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.149 5.149 5 C -0.095 4.095 6 C -0.292 4.292 7 C -0.090 4.090 8 C -0.073 4.073 9 C 0.298 3.702 10 O -0.394 6.394 11 O -0.268 6.268 12 C 0.066 3.934 13 C -0.235 4.235 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.486 4.486 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.249 4.249 26 C -0.083 4.083 27 N -0.084 5.084 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.187 0.813 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.004 20.354 3.689 23.430 hybrid contribution 0.384 -0.326 -0.829 0.970 sum -10.620 20.028 2.860 22.849 Atomic orbital electron populations 1.22236 0.93651 1.03382 1.02919 1.21254 0.94689 0.92714 0.86173 1.22189 1.02521 0.93972 1.03487 1.48852 1.50400 1.07391 1.08282 1.22367 1.01744 0.99780 0.85636 1.21324 1.14188 0.92177 1.01552 1.21556 1.00288 0.95423 0.91702 1.19636 0.95887 0.92150 0.99638 1.23284 0.83301 0.79901 0.83681 1.90653 1.62849 1.56788 1.29151 1.86702 1.47295 1.36024 1.56762 1.21691 0.85398 0.94526 0.91825 1.18700 1.04436 0.91469 1.08909 1.20549 0.97666 0.92657 0.98561 1.21297 1.01599 0.96064 1.00018 1.17689 0.90112 0.92264 0.88466 1.19675 1.00622 0.91851 1.36420 0.90180 1.25970 0.94384 1.01747 0.92311 1.69829 1.04726 1.32319 1.34114 0.86273 0.80026 0.80707 0.79521 1.19185 1.20232 1.18526 1.20958 1.06159 0.92328 1.05485 1.20396 0.95959 0.96413 0.95511 1.77440 1.19094 0.92761 1.19094 0.90522 0.91954 0.91540 0.87921 0.91594 0.89994 0.91364 0.81298 0.83406 0.86246 0.85894 0.92232 0.92143 0.89311 0.86242 0.90657 0.88732 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.52 37.16 0.35 -0.67 16 2 C 0.15 1.23 3.93 -67.93 -0.27 0.96 16 3 C -0.16 -0.87 8.84 37.16 0.33 -0.54 16 4 N -0.37 -4.19 3.52 -54.86 -0.19 -4.38 16 5 C 0.05 0.49 10.59 -17.22 -0.18 0.30 16 6 C -0.26 -2.90 10.72 -40.01 -0.43 -3.33 16 7 C 0.08 1.06 6.02 -82.40 -0.50 0.56 16 8 C -0.03 -0.43 6.39 -29.04 -0.19 -0.62 16 9 C 0.46 7.88 7.95 36.01 0.29 8.16 16 10 O -0.51 -10.11 15.31 -18.74 -0.29 -10.40 16 11 O -0.35 -6.74 10.20 -39.28 -0.40 -7.14 16 12 C 0.14 2.75 5.58 36.00 0.20 2.95 16 13 C -0.23 -5.30 5.54 -104.33 -0.58 -5.88 16 14 C -0.08 -1.80 9.67 -39.66 -0.38 -2.19 16 15 C -0.17 -4.44 8.70 -38.87 -0.34 -4.77 16 16 C 0.12 3.12 5.57 -106.83 -0.60 2.52 16 17 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 20 N -0.79 -20.03 10.95 55.55 0.61 -19.42 16 21 Si 0.91 18.32 29.60 -169.99 -5.03 13.28 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 16 26 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 27 N -0.26 -3.98 11.93 33.67 0.40 -3.58 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.28 7.16 -51.93 -0.37 -0.10 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.17 0.99 7.27 -52.49 -0.38 0.60 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.12 1.21 8.12 -51.93 -0.42 0.79 16 39 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 40 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 41 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 43 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 45 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -32.34 385.79 -9.11 -41.44 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.54 Total: 5.33 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -3.48 Total: -20.94 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.82 Total: -27.39 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.69 Total: -17.54 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.34 -9.11 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.552 kcal (2) G-P(sol) polarization free energy of solvation -32.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds