Wall clock time and date at job start Tue Mar 31 2020 16:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 N 1.46500 * 109.46793 * 240.00472 * 2 1 3 5 5 C 1.34950 * 126.03650 * 84.71167 * 4 2 1 6 6 C 1.35319 * 107.74435 * 179.84075 * 5 4 2 7 7 C 1.39871 * 107.92209 * 0.42244 * 6 5 4 8 8 C 1.50696 * 125.90244 * 179.71242 * 7 6 5 9 9 C 1.50702 * 109.46795 * 125.00348 * 8 7 6 10 10 O 1.20819 * 120.00279 * 0.02562 * 9 8 7 11 11 O 1.34237 * 119.99869 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99988 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.46793 * 179.97438 * 12 11 9 14 14 C 1.38639 * 119.74701 * 269.72397 * 13 12 11 15 15 C 1.37615 * 120.24462 * 179.72708 * 14 13 12 16 16 C 1.40718 * 119.74921 * 0.56841 * 15 14 13 17 17 C 1.41393 * 120.24515 * 179.68732 * 16 15 14 18 18 H 1.08000 * 119.99583 * 204.40427 * 17 16 15 19 19 C 1.39947 * 120.00280 * 24.40350 * 17 16 15 20 20 N 1.30822 * 119.99933 * 17.84432 * 19 17 16 21 21 Si 1.86800 * 119.99767 * 197.85126 * 19 17 16 22 22 H 1.48501 * 109.47312 * 89.99949 * 21 19 17 23 23 H 1.48502 * 109.46736 * 209.99587 * 21 19 17 24 24 H 1.48496 * 109.47307 * 329.99889 * 21 19 17 25 25 C 1.40711 * 119.50851 * 359.70121 * 16 15 14 26 26 C 1.37616 * 119.74633 * 0.02562 * 25 16 15 27 27 N 1.30842 * 108.19994 * 359.74075 * 7 6 5 28 28 H 1.09004 * 109.46808 * 299.99262 * 1 2 3 29 29 H 1.09001 * 109.47726 * 59.99339 * 1 2 3 30 30 H 1.09004 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47446 * 120.00205 * 2 1 3 32 32 H 1.09001 * 109.47293 * 300.00925 * 3 2 1 33 33 H 1.09004 * 109.46610 * 60.00617 * 3 2 1 34 34 H 1.08997 * 109.47325 * 180.02562 * 3 2 1 35 35 H 1.07996 * 126.13031 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.04285 * 180.16583 * 6 5 4 37 37 H 1.08992 * 109.47676 * 245.00810 * 8 7 6 38 38 H 1.09000 * 109.46899 * 5.00934 * 8 7 6 39 39 H 1.09005 * 109.46684 * 299.99239 * 12 11 9 40 40 H 1.09001 * 109.46992 * 59.99343 * 12 11 9 41 41 H 1.07997 * 119.87790 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12610 * 180.27520 * 15 14 13 43 43 H 0.96995 * 119.99794 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.13161 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.88156 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1880 -0.1404 -2.4168 6 6 2.6565 -1.1049 -3.2423 7 6 2.7679 -2.2872 -2.5033 8 6 3.2453 -3.6163 -3.0292 9 6 4.3910 -4.1090 -2.1832 10 8 4.7797 -3.4488 -1.2489 11 8 4.9797 -5.2813 -2.4677 12 6 6.0766 -5.6934 -1.6101 13 6 6.6081 -7.0234 -2.0786 14 6 6.0765 -8.1962 -1.5648 15 6 6.5503 -9.4164 -1.9896 16 6 7.5865 -9.4707 -2.9402 17 6 8.0857 -10.7186 -3.3790 18 1 9.0884 -10.7904 -3.7739 19 6 7.2807 -11.8607 -3.3017 20 7 5.9854 -11.7399 -3.1637 21 14 8.0558 -13.5578 -3.3954 22 1 8.4085 -14.0170 -2.0279 23 1 7.0916 -14.5093 -4.0038 24 1 9.2833 -13.4960 -4.2288 25 6 8.1222 -8.2738 -3.4506 26 6 7.6291 -7.0649 -3.0156 27 7 2.3856 -2.0400 -1.2767 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.9888 0.8864 -2.6858 36 1 2.8974 -0.9842 -4.2882 37 1 2.4286 -4.3370 -2.9902 38 1 3.5787 -3.5004 -4.0604 39 1 6.8713 -4.9485 -1.6535 40 1 5.7207 -5.7857 -0.5840 41 1 5.2850 -8.1521 -0.8315 42 1 6.1318 -10.3289 -1.5913 43 1 5.4274 -12.5315 -3.1104 44 1 8.9179 -8.3037 -4.1802 45 1 8.0389 -6.1449 -3.4056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114641.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:00 Heat of formation + Delta-G solvation = -17.161030 kcal Electronic energy + Delta-G solvation = -25999.511885 eV Core-core repulsion = 22175.507434 eV Total energy + Delta-G solvation = -3824.004451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.29547 -41.28026 -39.48043 -37.56383 -36.73936 -35.67949 -33.23910 -32.47893 -31.23508 -30.92503 -29.58653 -28.59092 -28.20147 -25.63588 -23.88358 -22.95934 -22.58021 -21.80394 -21.04935 -20.51389 -19.26978 -18.62257 -18.04243 -17.55480 -17.50125 -17.04455 -16.21046 -15.92104 -15.61708 -15.59317 -15.33769 -15.01665 -14.60016 -14.39493 -14.19064 -13.92887 -13.84199 -13.72781 -13.59677 -13.49284 -13.29061 -13.07741 -12.92500 -12.83730 -12.69019 -12.57435 -12.34942 -12.10119 -12.07659 -11.71015 -11.62475 -11.51725 -11.37491 -11.27777 -11.04745 -10.24001 -9.48585 -9.43933 -9.33325 -8.68478 -6.39621 0.71039 0.98293 1.10901 1.25446 1.38614 1.43818 1.52840 1.57759 1.69377 2.17304 2.20971 2.73942 3.40671 3.66640 3.70444 3.90439 3.92817 4.02991 4.08674 4.09746 4.10207 4.23778 4.46594 4.47963 4.52989 4.55049 4.57876 4.63182 4.77007 4.80822 4.84796 4.91906 5.00498 5.11149 5.12096 5.15731 5.20797 5.30185 5.39279 5.53449 5.65023 5.69444 5.88431 6.05528 6.14596 6.23016 6.31520 6.64158 6.80092 6.81668 6.88406 6.97097 8.28280 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.032765 B = 0.001816 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.356843 B =15414.747959 C =15590.760869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 C -0.155 4.155 4 N -0.369 5.369 5 C 0.059 3.941 6 C -0.276 4.276 7 C 0.056 3.944 8 C -0.027 4.027 9 C 0.457 3.543 10 O -0.536 6.536 11 O -0.360 6.360 12 C 0.143 3.857 13 C -0.230 4.230 14 C -0.082 4.082 15 C -0.194 4.194 16 C 0.086 3.914 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.034 3.966 20 N -0.818 5.818 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.256 1.256 25 C -0.243 4.243 26 C -0.065 4.065 27 N -0.320 5.320 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.211 0.789 36 H 0.172 0.828 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.291 0.709 44 H 0.105 0.895 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 22.748 1.245 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 C -0.213 4.213 4 N -0.152 5.152 5 C -0.087 4.087 6 C -0.305 4.305 7 C -0.110 4.110 8 C -0.066 4.066 9 C 0.301 3.699 10 O -0.426 6.426 11 O -0.277 6.277 12 C 0.070 3.930 13 C -0.231 4.231 14 C -0.100 4.100 15 C -0.213 4.213 16 C 0.084 3.916 17 C -0.521 4.521 18 H 0.099 0.901 19 C -0.182 4.182 20 N -0.443 5.443 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.180 1.180 25 C -0.263 4.263 26 C -0.083 4.083 27 N -0.143 5.143 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.228 0.772 36 H 0.190 0.810 37 H 0.151 0.849 38 H 0.174 0.826 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.664 22.393 2.847 25.408 hybrid contribution 0.499 -0.751 -0.508 1.034 sum -11.165 21.642 2.340 24.465 Atomic orbital electron populations 1.22181 0.92191 1.02348 1.04597 1.21573 0.95857 0.93801 0.84631 1.22170 1.01506 0.92134 1.05507 1.49165 1.49867 1.06469 1.09748 1.23048 0.99835 1.01264 0.84567 1.21696 1.14575 0.91377 1.02885 1.21825 1.00718 0.96417 0.91992 1.19804 0.94314 0.92306 1.00171 1.24132 0.83519 0.78644 0.83596 1.90640 1.63916 1.57377 1.30655 1.86673 1.47162 1.37304 1.56589 1.21503 0.86196 0.93409 0.91847 1.18983 1.03900 0.92310 1.07904 1.20766 0.97923 0.92535 0.98784 1.21267 1.02619 0.96357 1.01074 1.18058 0.90911 0.93450 0.89194 1.19933 1.01112 0.92889 1.38116 0.90108 1.26848 0.94614 1.05466 0.91277 1.69878 1.06033 1.33870 1.34543 0.85143 0.79177 0.75399 0.79646 1.18713 1.19151 1.17978 1.21176 1.06637 0.92503 1.05940 1.20711 0.95540 0.97001 0.95042 1.77335 1.21149 0.95341 1.20467 0.88157 0.90893 0.93886 0.89811 0.89739 0.87813 0.92844 0.77234 0.81007 0.84858 0.82637 0.91088 0.92041 0.87868 0.87758 0.89866 0.87723 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.52 71.98 0.69 -1.02 16 2 C 0.14 2.13 3.93 44.99 0.18 2.31 16 3 C -0.16 -1.28 8.84 71.98 0.64 -0.64 16 4 N -0.37 -8.09 3.52 -327.49 -1.15 -9.25 16 5 C 0.06 0.99 10.59 83.54 0.89 1.88 16 6 C -0.28 -5.50 10.72 21.99 0.24 -5.26 16 7 C 0.06 1.49 6.02 43.10 0.26 1.75 16 8 C -0.03 -0.66 6.39 29.10 0.19 -0.48 16 9 C 0.46 15.49 7.95 71.24 0.57 16.05 16 10 O -0.54 -21.44 15.31 21.99 0.34 -21.11 16 11 O -0.36 -13.52 10.20 -51.48 -0.53 -14.05 16 12 C 0.14 5.59 5.58 71.23 0.40 5.99 16 13 C -0.23 -10.32 5.54 -19.67 -0.11 -10.43 16 14 C -0.08 -3.95 9.67 22.22 0.21 -3.74 16 15 C -0.19 -10.42 8.70 22.73 0.20 -10.23 16 16 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 17 C -0.49 -26.43 9.05 23.46 0.21 -26.22 16 18 H 0.08 4.15 7.91 -2.91 -0.02 4.13 16 19 C 0.03 1.70 5.14 85.26 0.44 2.14 16 20 N -0.82 -42.73 10.95 21.83 0.24 -42.49 16 21 Si 0.99 37.74 29.60 68.60 2.03 39.77 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 25 C -0.24 -12.04 9.80 22.73 0.22 -11.82 16 26 C -0.06 -2.91 9.67 22.22 0.21 -2.69 16 27 N -0.32 -9.75 11.93 -47.38 -0.57 -10.31 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.67 8.14 -2.38 -0.02 0.66 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 0.39 7.16 -2.39 -0.02 0.37 16 33 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.21 1.57 7.27 -2.91 -0.02 1.54 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.16 2.68 8.12 -2.39 -0.02 2.66 16 39 H 0.07 2.61 8.07 -2.38 -0.02 2.59 16 40 H 0.06 2.38 8.07 -2.39 -0.02 2.36 16 41 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 42 H 0.10 5.82 6.16 -2.91 -0.02 5.80 16 43 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 44 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 45 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -72.98 385.79 6.65 -66.33 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.98 Total: 28.91 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 5.30 Total: -37.81 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -1.48 Total: -62.05 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.19 Total: -35.15 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -72.98 6.65 -66.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114641.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.174 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds