Wall clock time and date at job start Tue Mar 31 2020 16:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46501 * 109.46998 * 120.00256 * 2 1 3 5 5 C 1.36884 * 126.39759 * 300.01873 * 4 2 1 6 6 C 1.34661 * 106.81589 * 179.97438 * 5 4 2 7 7 N 1.34125 * 108.02310 * 359.77529 * 6 5 4 8 8 C 1.30495 * 109.25777 * 0.37731 * 7 6 5 9 9 C 1.50695 * 125.65343 * 179.88979 * 8 7 6 10 10 O 1.45198 * 109.47314 * 269.68849 * 9 8 7 11 11 C 1.34234 * 117.00378 * 179.97438 * 10 9 8 12 12 O 1.20832 * 119.99355 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00233 * 179.97438 * 11 10 9 14 14 C 1.50698 * 109.46927 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.13328 * 264.99985 * 14 13 11 16 16 C 1.38610 * 120.25115 * 179.97438 * 15 14 13 17 17 C 1.38662 * 120.50078 * 0.02899 * 16 15 14 18 18 C 1.37595 * 120.24945 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12208 * 84.73196 * 14 13 11 20 20 C 1.41393 * 120.24665 * 359.97438 * 19 14 13 21 21 H 1.07996 * 119.99758 * 333.90135 * 20 19 14 22 22 C 1.39952 * 119.99920 * 153.89974 * 20 19 14 23 23 N 1.30817 * 119.99956 * 343.71193 * 22 20 19 24 24 Si 1.86797 * 119.99651 * 163.71287 * 22 20 19 25 25 H 1.48495 * 109.47102 * 90.00226 * 24 22 20 26 26 H 1.48505 * 109.46943 * 210.00003 * 24 22 20 27 27 H 1.48500 * 109.47194 * 330.00031 * 24 22 20 28 28 H 1.09007 * 109.47033 * 299.99877 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99746 * 1 2 3 30 30 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46728 * 239.99925 * 2 1 3 32 32 H 1.09000 * 109.47104 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46957 * 299.99921 * 3 2 1 34 34 H 1.08995 * 109.47270 * 59.99849 * 3 2 1 35 35 H 1.07996 * 126.59102 * 0.02562 * 5 4 2 36 36 H 1.08004 * 125.99000 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47490 * 149.69008 * 9 8 7 38 38 H 1.09005 * 109.47456 * 29.69034 * 9 8 7 39 39 H 1.08997 * 109.46636 * 60.00376 * 13 11 10 40 40 H 1.08996 * 109.46994 * 300.00448 * 13 11 10 41 41 H 1.07999 * 119.87356 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.74901 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.87086 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.12964 * 179.97438 * 18 17 16 45 45 H 0.97000 * 120.00500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7694 -0.3393 2.4955 6 6 2.4047 -1.2385 3.2708 7 7 3.0205 -2.1180 2.4669 8 6 2.7977 -1.7932 1.2228 9 6 3.3183 -2.5302 0.0159 10 8 4.6033 -1.9768 -0.3722 11 6 5.2069 -2.5264 -1.4377 12 8 4.6786 -3.4395 -2.0270 13 6 6.5428 -2.0040 -1.8997 14 6 6.9983 -2.7856 -3.1050 15 6 7.8423 -3.8620 -2.9519 16 6 8.2623 -4.5830 -4.0587 17 6 7.8391 -4.2295 -5.3309 18 6 6.9962 -3.1564 -5.5078 19 6 6.5578 -2.4212 -4.3906 20 6 5.6857 -1.3212 -4.5595 21 1 5.0311 -1.0224 -3.7542 22 6 5.6709 -0.6195 -5.7704 23 7 6.6567 -0.7584 -6.6190 24 14 4.2433 0.5154 -6.1746 25 1 4.5394 1.8813 -5.6727 26 1 4.0479 0.5603 -7.6460 27 1 3.0078 0.0069 -5.5264 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.1766 0.4977 2.8338 36 1 2.4131 -1.2519 4.3507 37 1 2.6127 -2.4225 -0.8080 38 1 3.4357 -3.5866 0.2578 39 1 7.2729 -2.1138 -1.0978 40 1 6.4493 -0.9507 -2.1642 41 1 8.1779 -4.1464 -1.9655 42 1 8.9250 -5.4258 -3.9293 43 1 8.1730 -4.7981 -6.1862 44 1 6.6681 -2.8826 -6.4996 45 1 6.6463 -0.2724 -7.4584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:49 Heat of formation + Delta-G solvation = -12.999452 kcal Electronic energy + Delta-G solvation = -27697.851979 eV Core-core repulsion = 23874.027987 eV Total energy + Delta-G solvation = -3823.823992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30744 -39.91076 -37.66471 -36.26420 -35.91186 -33.69380 -31.96969 -30.98331 -30.91418 -29.52476 -27.67156 -27.47837 -26.17896 -25.02696 -23.11538 -21.38050 -21.04654 -20.95510 -19.63634 -19.37422 -17.48960 -17.22885 -17.14727 -16.15579 -15.73879 -15.43959 -15.22666 -14.95307 -14.52659 -14.29391 -14.04012 -13.74550 -13.66651 -13.34613 -13.26742 -12.76518 -12.66499 -12.63034 -12.48582 -12.16150 -11.79936 -11.76700 -11.63251 -11.44792 -11.25297 -11.13227 -11.04167 -10.78909 -10.46742 -10.40891 -10.06272 -9.85671 -9.73269 -9.54742 -9.45222 -9.22272 -8.56164 -7.39070 -7.36865 -6.80578 -4.42410 1.73631 2.50987 2.66618 2.80210 2.89346 2.99473 3.01152 3.03842 3.20993 3.56841 3.86547 4.22637 4.32717 4.53528 4.54620 4.60537 4.71974 5.04117 5.13360 5.17236 5.25628 5.32339 5.37363 5.44880 5.55712 5.59649 5.69129 5.74163 5.81068 5.94484 6.04152 6.18928 6.25394 6.37450 6.46994 6.63612 6.69906 6.87161 7.01096 7.01648 7.23579 7.35598 7.57764 7.85647 7.98482 7.98958 8.07399 8.24063 8.39702 8.57834 8.83481 8.93916 10.13484 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003877 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.409485 B = 7220.134739 C = 9107.407405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 C -0.161 4.161 4 N -0.438 5.438 5 C -0.046 4.046 6 C -0.030 4.030 7 N -0.471 5.471 8 C 0.205 3.795 9 C 0.152 3.848 10 O -0.362 6.362 11 C 0.461 3.539 12 O -0.490 6.490 13 C -0.040 4.040 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.238 4.238 17 C -0.104 4.104 18 C -0.158 4.158 19 C 0.131 3.869 20 C -0.459 4.459 21 H 0.072 0.928 22 C 0.078 3.922 23 N -0.791 5.791 24 Si 0.902 3.098 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.262 1.262 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 5.778 11.501 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 C -0.219 4.219 4 N -0.121 5.121 5 C -0.180 4.180 6 C -0.179 4.179 7 N -0.191 5.191 8 C -0.057 4.057 9 C 0.076 3.924 10 O -0.280 6.280 11 C 0.304 3.696 12 O -0.375 6.375 13 C -0.077 4.077 14 C -0.197 4.197 15 C -0.094 4.094 16 C -0.258 4.258 17 C -0.122 4.122 18 C -0.178 4.178 19 C 0.129 3.871 20 C -0.488 4.488 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.417 5.417 24 Si 0.726 3.274 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.186 1.186 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.190 0.810 36 H 0.188 0.812 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.136 0.864 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.216 4.980 11.188 15.948 hybrid contribution -1.254 1.196 -0.482 1.798 sum -11.469 6.176 10.706 16.861 Atomic orbital electron populations 1.22170 0.93011 1.03282 1.03415 1.21608 0.95576 0.94690 0.86527 1.22152 1.02860 0.93673 1.03201 1.45622 1.37736 1.21870 1.06908 1.22611 1.08139 1.04273 0.83003 1.22303 1.01468 0.94501 0.99672 1.70229 1.22112 1.27382 0.99395 1.22595 0.98435 0.90130 0.94515 1.20786 0.84031 0.96856 0.90710 1.86614 1.33378 1.60464 1.47535 1.24577 0.87984 0.80821 0.76258 1.90655 1.64894 1.27947 1.53970 1.19992 0.88694 1.02000 0.97019 1.19051 1.06029 1.01731 0.92840 1.20345 0.97651 0.94941 0.96495 1.20331 1.08714 1.03602 0.93122 1.20711 0.98664 0.97406 0.95458 1.21304 1.01459 0.95587 0.99413 1.17340 0.89104 0.90724 0.89980 1.19450 1.19189 1.11416 0.98753 0.90941 1.25870 0.95741 0.96809 0.95553 1.69806 1.27947 1.35310 1.08603 0.86414 0.82214 0.80256 0.78510 1.19413 1.19966 1.18592 0.91667 0.90187 0.91677 0.87687 0.91116 0.90235 0.91781 0.80991 0.81182 0.90010 0.88257 0.89191 0.87476 0.89432 0.89448 0.89423 0.86409 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.25 37.16 0.34 -0.85 16 2 C 0.12 1.16 3.52 -67.93 -0.24 0.92 16 3 C -0.16 -1.39 9.25 37.16 0.34 -1.04 16 4 N -0.44 -5.20 2.61 -106.83 -0.28 -5.48 16 5 C -0.05 -0.48 10.60 -16.56 -0.18 -0.66 16 6 C -0.03 -0.37 11.87 -17.82 -0.21 -0.58 16 7 N -0.47 -7.32 11.25 -10.82 -0.12 -7.45 16 8 C 0.20 3.01 7.54 -155.42 -1.17 1.84 16 9 C 0.15 2.35 5.60 36.00 0.20 2.55 16 10 O -0.36 -6.43 10.20 -39.27 -0.40 -6.83 16 11 C 0.46 9.26 7.57 36.00 0.27 9.53 16 12 O -0.49 -11.26 15.78 -18.76 -0.30 -11.56 16 13 C -0.04 -0.79 5.29 -29.04 -0.15 -0.94 16 14 C -0.19 -4.61 4.43 -103.91 -0.46 -5.07 16 15 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 16 C -0.24 -5.44 10.05 -39.29 -0.39 -5.83 16 17 C -0.10 -2.48 10.02 -39.66 -0.40 -2.87 16 18 C -0.16 -4.13 8.69 -38.87 -0.34 -4.46 16 19 C 0.13 3.41 5.56 -106.82 -0.59 2.82 16 20 C -0.46 -11.68 8.14 -37.74 -0.31 -11.99 16 21 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 22 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 23 N -0.79 -19.85 10.96 55.55 0.61 -19.24 16 24 Si 0.90 18.02 29.59 -169.99 -5.03 12.99 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 28 H 0.06 0.42 7.95 -51.92 -0.41 0.00 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 1.14 6.67 -51.93 -0.35 0.79 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.47 7.95 -51.93 -0.41 0.05 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.17 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.08 1.17 7.07 -51.93 -0.37 0.80 16 38 H 0.10 1.54 8.13 -51.93 -0.42 1.12 16 39 H 0.09 1.54 8.05 -51.93 -0.42 1.12 16 40 H 0.11 2.09 7.08 -51.93 -0.37 1.73 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 44 H 0.12 3.14 6.20 -52.49 -0.33 2.82 16 45 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -30.90 380.86 -9.90 -40.80 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.36 Total: 7.97 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -3.76 Total: -16.95 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.21 Total: -32.16 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.70 Total: -18.39 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.90 -9.90 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.802 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds