Wall clock time and date at job start Tue Mar 31 2020 16:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46501 * 109.46998 * 120.00256 * 2 1 3 5 5 C 1.36884 * 126.39759 * 300.01873 * 4 2 1 6 6 C 1.34661 * 106.81589 * 179.97438 * 5 4 2 7 7 N 1.34125 * 108.02310 * 359.77529 * 6 5 4 8 8 C 1.30495 * 109.25777 * 0.37731 * 7 6 5 9 9 C 1.50695 * 125.65343 * 179.88979 * 8 7 6 10 10 O 1.45198 * 109.47314 * 269.68849 * 9 8 7 11 11 C 1.34234 * 117.00378 * 179.97438 * 10 9 8 12 12 O 1.20832 * 119.99355 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00233 * 179.97438 * 11 10 9 14 14 C 1.50698 * 109.46927 * 180.02562 * 13 11 10 15 15 C 1.37637 * 120.13328 * 264.99985 * 14 13 11 16 16 C 1.38610 * 120.25115 * 179.97438 * 15 14 13 17 17 C 1.38662 * 120.50078 * 0.02899 * 16 15 14 18 18 C 1.37595 * 120.24945 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12208 * 84.73196 * 14 13 11 20 20 C 1.41393 * 120.24665 * 359.97438 * 19 14 13 21 21 H 1.07996 * 119.99758 * 333.90135 * 20 19 14 22 22 C 1.39952 * 119.99920 * 153.89974 * 20 19 14 23 23 N 1.30817 * 119.99956 * 343.71193 * 22 20 19 24 24 Si 1.86797 * 119.99651 * 163.71287 * 22 20 19 25 25 H 1.48495 * 109.47102 * 90.00226 * 24 22 20 26 26 H 1.48505 * 109.46943 * 210.00003 * 24 22 20 27 27 H 1.48500 * 109.47194 * 330.00031 * 24 22 20 28 28 H 1.09007 * 109.47033 * 299.99877 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99746 * 1 2 3 30 30 H 1.08999 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46728 * 239.99925 * 2 1 3 32 32 H 1.09000 * 109.47104 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46957 * 299.99921 * 3 2 1 34 34 H 1.08995 * 109.47270 * 59.99849 * 3 2 1 35 35 H 1.07996 * 126.59102 * 0.02562 * 5 4 2 36 36 H 1.08004 * 125.99000 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47490 * 149.69008 * 9 8 7 38 38 H 1.09005 * 109.47456 * 29.69034 * 9 8 7 39 39 H 1.08997 * 109.46636 * 60.00376 * 13 11 10 40 40 H 1.08996 * 109.46994 * 300.00448 * 13 11 10 41 41 H 1.07999 * 119.87356 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.74901 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.87086 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.12964 * 179.97438 * 18 17 16 45 45 H 0.97000 * 120.00500 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7694 -0.3393 2.4955 6 6 2.4047 -1.2385 3.2708 7 7 3.0205 -2.1180 2.4669 8 6 2.7977 -1.7932 1.2228 9 6 3.3183 -2.5302 0.0159 10 8 4.6033 -1.9768 -0.3722 11 6 5.2069 -2.5264 -1.4377 12 8 4.6786 -3.4395 -2.0270 13 6 6.5428 -2.0040 -1.8997 14 6 6.9983 -2.7856 -3.1050 15 6 7.8423 -3.8620 -2.9519 16 6 8.2623 -4.5830 -4.0587 17 6 7.8391 -4.2295 -5.3309 18 6 6.9962 -3.1564 -5.5078 19 6 6.5578 -2.4212 -4.3906 20 6 5.6857 -1.3212 -4.5595 21 1 5.0311 -1.0224 -3.7542 22 6 5.6709 -0.6195 -5.7704 23 7 6.6567 -0.7584 -6.6190 24 14 4.2433 0.5154 -6.1746 25 1 4.5394 1.8813 -5.6727 26 1 4.0479 0.5603 -7.6460 27 1 3.0078 0.0069 -5.5264 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.1766 0.4977 2.8338 36 1 2.4131 -1.2519 4.3507 37 1 2.6127 -2.4225 -0.8080 38 1 3.4357 -3.5866 0.2578 39 1 7.2729 -2.1138 -1.0978 40 1 6.4493 -0.9507 -2.1642 41 1 8.1779 -4.1464 -1.9655 42 1 8.9250 -5.4258 -3.9293 43 1 8.1730 -4.7981 -6.1862 44 1 6.6681 -2.8826 -6.4996 45 1 6.6463 -0.2724 -7.4584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777162616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:47 Heat of formation + Delta-G solvation = -27.097628 kcal Electronic energy + Delta-G solvation = -27698.463321 eV Core-core repulsion = 23874.027987 eV Total energy + Delta-G solvation = -3824.435334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.25454 -41.48094 -39.43914 -37.48815 -37.05461 -35.53078 -33.66745 -32.12291 -31.79116 -31.37847 -29.04153 -28.28297 -27.52543 -26.79486 -23.93063 -22.99047 -22.79626 -22.00274 -21.11439 -20.58087 -19.10140 -18.70418 -18.39145 -17.66511 -17.21384 -16.94397 -16.37635 -16.14975 -15.87434 -15.52547 -15.43145 -15.06082 -14.91430 -14.46845 -14.40034 -14.13652 -14.08370 -13.68322 -13.47866 -13.34175 -13.21793 -13.18983 -12.92368 -12.82184 -12.74363 -12.54545 -12.47172 -12.16649 -12.14041 -11.82814 -11.50185 -11.36219 -11.26553 -11.05859 -11.03456 -10.68006 -9.50308 -9.25777 -9.22870 -8.61899 -6.33386 0.65317 0.98195 1.10673 1.29442 1.35774 1.47338 1.53445 1.62316 1.82184 2.19110 2.32294 2.76776 3.20767 3.49522 3.60167 3.72781 3.86317 3.92525 4.01855 4.09410 4.16076 4.33375 4.42024 4.47463 4.55369 4.56879 4.59734 4.68936 4.72132 4.73414 4.75010 4.83634 4.97811 5.05007 5.16237 5.16361 5.29773 5.33506 5.36118 5.51044 5.73757 5.76859 6.00661 6.08539 6.12114 6.19474 6.38006 6.69022 6.83909 6.95204 7.02427 7.06757 8.34547 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003877 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.409485 B = 7220.134739 C = 9107.407405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 C -0.157 4.157 4 N -0.433 5.433 5 C -0.024 4.024 6 C -0.052 4.052 7 N -0.505 5.505 8 C 0.172 3.828 9 C 0.154 3.846 10 O -0.359 6.359 11 C 0.470 3.530 12 O -0.525 6.525 13 C -0.039 4.039 14 C -0.203 4.203 15 C -0.085 4.085 16 C -0.242 4.242 17 C -0.112 4.112 18 C -0.191 4.191 19 C 0.101 3.899 20 C -0.485 4.485 21 H 0.071 0.929 22 C 0.038 3.962 23 N -0.823 5.823 24 Si 0.970 3.030 25 H -0.255 1.255 26 H -0.268 1.268 27 H -0.262 1.262 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.215 0.785 36 H 0.195 0.805 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 7.461 13.129 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.009 3.991 3 C -0.214 4.214 4 N -0.117 5.117 5 C -0.159 4.159 6 C -0.201 4.201 7 N -0.226 5.226 8 C -0.088 4.088 9 C 0.078 3.922 10 O -0.276 6.276 11 C 0.315 3.685 12 O -0.413 6.413 13 C -0.076 4.076 14 C -0.204 4.204 15 C -0.103 4.103 16 C -0.261 4.261 17 C -0.130 4.130 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.514 4.514 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.449 5.449 24 Si 0.791 3.209 25 H -0.179 1.179 26 H -0.193 1.193 27 H -0.186 1.186 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.232 0.768 36 H 0.212 0.788 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.118 0.882 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.583 6.669 12.821 18.521 hybrid contribution -0.808 0.647 -0.873 1.354 sum -12.392 7.316 11.948 18.704 Atomic orbital electron populations 1.22145 0.90809 1.03164 1.05043 1.21819 0.97254 0.94884 0.85122 1.22143 1.01359 0.93014 1.04933 1.45805 1.36719 1.20954 1.08182 1.23276 1.06565 1.04174 0.81844 1.22845 1.01835 0.94504 1.00907 1.70146 1.23269 1.28978 1.00204 1.22271 1.00642 0.91983 0.93906 1.20837 0.82914 0.96753 0.91653 1.86583 1.34542 1.60095 1.46367 1.24439 0.87850 0.80061 0.76198 1.90639 1.65815 1.29618 1.55209 1.19997 0.89511 1.01383 0.96737 1.19431 1.05594 1.02096 0.93303 1.20766 0.97118 0.94443 0.98016 1.20725 1.08550 1.04221 0.92632 1.20992 0.98115 0.96947 0.96978 1.21320 1.03538 0.97289 0.98931 1.17716 0.89944 0.91413 0.91093 1.19628 1.19893 1.12120 0.99770 0.91053 1.26684 0.97975 0.98128 0.94947 1.69868 1.29523 1.36333 1.09126 0.85386 0.78544 0.78591 0.78429 1.17922 1.19295 1.18573 0.89895 0.88691 0.92662 0.89601 0.93400 0.88805 0.89787 0.76828 0.78808 0.89442 0.88954 0.86086 0.87350 0.86446 0.86521 0.87437 0.88219 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.25 71.98 0.67 -1.20 16 2 C 0.11 1.98 3.52 44.99 0.16 2.14 16 3 C -0.16 -2.33 9.25 71.98 0.67 -1.67 16 4 N -0.43 -9.62 2.61 -491.91 -1.28 -10.91 16 5 C -0.02 -0.43 10.60 83.08 0.88 0.45 16 6 C -0.05 -1.17 11.87 83.52 0.99 -0.18 16 7 N -0.50 -15.47 11.25 -188.14 -2.12 -17.59 16 8 C 0.17 5.04 7.54 138.13 1.04 6.08 16 9 C 0.15 4.88 5.60 71.23 0.40 5.27 16 10 O -0.36 -12.87 10.20 -51.45 -0.53 -13.40 16 11 C 0.47 19.09 7.57 71.24 0.54 19.63 16 12 O -0.53 -24.71 15.78 21.95 0.35 -24.37 16 13 C -0.04 -1.55 5.29 29.10 0.15 -1.40 16 14 C -0.20 -9.65 4.43 -19.40 -0.09 -9.74 16 15 C -0.09 -3.80 9.66 22.22 0.21 -3.59 16 16 C -0.24 -10.82 10.05 22.46 0.23 -10.59 16 17 C -0.11 -5.39 10.02 22.22 0.22 -5.16 16 18 C -0.19 -10.32 8.69 22.73 0.20 -10.13 16 19 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 20 C -0.48 -25.40 8.14 23.46 0.19 -25.21 16 21 H 0.07 3.61 6.67 -2.91 -0.02 3.59 16 22 C 0.04 1.87 5.16 85.26 0.44 2.31 16 23 N -0.82 -42.41 10.96 21.83 0.24 -42.17 16 24 Si 0.97 37.09 29.59 68.60 2.03 39.12 16 25 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 26 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 27 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 28 H 0.08 0.73 7.95 -2.38 -0.02 0.71 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.85 6.67 -2.39 -0.02 1.83 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 0.91 7.95 -2.39 -0.02 0.89 16 35 H 0.22 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.09 2.61 7.07 -2.38 -0.02 2.59 16 38 H 0.09 3.00 8.13 -2.38 -0.02 2.98 16 39 H 0.12 3.97 8.05 -2.39 -0.02 3.95 16 40 H 0.11 4.27 7.08 -2.39 -0.02 4.25 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.10 5.61 6.20 -2.91 -0.02 5.59 16 45 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 Total: -1.00 -69.28 380.86 6.47 -62.81 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.99 Total: 34.21 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 6.78 Total: -27.71 kcal Atomic # 7 Polarization: -67.50 SS G_CDS: -3.16 Total: -70.66 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.18 Total: -37.77 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -69.28 6.47 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.714 kcal (2) G-P(sol) polarization free energy of solvation -69.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds