Wall clock time and date at job start Tue Mar 31 2020 16:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 N 1.46497 * 109.47238 * 239.99619 * 2 1 3 5 5 C 1.34951 * 126.03709 * 84.71481 * 4 2 1 6 6 C 1.35314 * 107.74707 * 179.83705 * 5 4 2 7 7 C 1.39866 * 107.91788 * 0.42947 * 6 5 4 8 8 C 1.50702 * 125.89654 * 179.71676 * 7 6 5 9 9 O 1.45201 * 109.47310 * 359.97438 * 8 7 6 10 10 C 1.34227 * 117.00200 * 180.02562 * 9 8 7 11 11 O 1.20826 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.13140 * 265.00416 * 13 12 10 15 15 C 1.38619 * 120.24993 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.50132 * 0.02562 * 15 14 13 17 17 C 1.37605 * 120.24885 * 0.03081 * 16 15 14 18 18 C 1.40705 * 120.12584 * 84.72482 * 13 12 10 19 19 C 1.41396 * 120.24317 * 0.02562 * 18 13 12 20 20 H 1.07995 * 119.99857 * 329.69678 * 19 18 13 21 21 C 1.39946 * 119.99924 * 149.70152 * 19 18 13 22 22 N 1.30828 * 119.99497 * 162.01320 * 21 19 18 23 23 Si 1.86799 * 120.00259 * 342.01013 * 21 19 18 24 24 H 1.48493 * 109.46967 * 95.40194 * 23 21 19 25 25 H 1.48494 * 109.47180 * 215.40287 * 23 21 19 26 26 H 1.48501 * 109.46883 * 335.40350 * 23 21 19 27 27 N 1.30832 * 108.20705 * 359.73495 * 7 6 5 28 28 H 1.09007 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46763 * 60.00394 * 1 2 3 30 30 H 1.08994 * 109.46951 * 300.00161 * 1 2 3 31 31 H 1.09004 * 109.46660 * 120.00118 * 2 1 3 32 32 H 1.08998 * 109.46980 * 59.99349 * 3 2 1 33 33 H 1.08996 * 109.47409 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47278 * 300.00200 * 3 2 1 35 35 H 1.07999 * 126.12315 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.04116 * 180.16503 * 6 5 4 37 37 H 1.09004 * 109.47234 * 119.99733 * 8 7 6 38 38 H 1.09003 * 109.46956 * 239.99416 * 8 7 6 39 39 H 1.09001 * 109.47403 * 300.00250 * 12 10 9 40 40 H 1.08995 * 109.47197 * 60.00134 * 12 10 9 41 41 H 1.07999 * 119.87547 * 359.97438 * 14 13 12 42 42 H 1.07994 * 119.74455 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.87472 * 179.97438 * 16 15 14 44 44 H 1.07996 * 120.12675 * 179.97438 * 17 16 15 45 45 H 0.96999 * 119.99313 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6569 -1.1052 -3.2420 7 6 2.7681 -2.2874 -2.5029 8 6 3.2457 -3.6165 -3.0286 9 8 3.5780 -3.4892 -4.4363 10 6 4.0222 -4.5917 -5.0598 11 8 4.1302 -5.6289 -4.4494 12 6 4.3873 -4.5358 -6.5208 13 6 4.8538 -5.8951 -6.9745 14 6 6.1969 -6.1954 -6.9887 15 6 6.6286 -7.4451 -7.4050 16 6 5.7152 -8.4058 -7.8118 17 6 4.3677 -8.1271 -7.8069 18 6 3.9175 -6.8641 -7.3796 19 6 2.5348 -6.5687 -7.3641 20 1 2.1397 -5.8716 -6.6400 21 6 1.6783 -7.1798 -8.2869 22 7 0.3883 -7.1969 -8.0701 23 14 2.3771 -7.9708 -9.8281 24 1 2.5711 -9.4243 -9.5941 25 1 1.4335 -7.7728 -10.9574 26 1 3.6823 -7.3440 -10.1579 27 7 2.3857 -2.0401 -1.2764 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9891 0.8861 -2.6857 36 1 2.8979 -0.9846 -4.2879 37 1 4.1295 -3.9306 -2.4733 38 1 2.4574 -4.3596 -2.9075 39 1 3.5148 -4.2379 -7.1023 40 1 5.1870 -3.8099 -6.6680 41 1 6.9171 -5.4546 -6.6743 42 1 7.6844 -7.6719 -7.4133 43 1 6.0628 -9.3760 -8.1346 44 1 3.6581 -8.8767 -8.1245 45 1 -0.2054 -7.6202 -8.7099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777164772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:07 Heat of formation + Delta-G solvation = 5.336260 kcal Electronic energy + Delta-G solvation = -26770.056496 eV Core-core repulsion = 22947.027600 eV Total energy + Delta-G solvation = -3823.028895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35170 -39.85224 -37.88605 -36.33619 -35.62103 -33.59376 -32.04061 -31.18981 -30.33398 -29.97987 -27.83614 -27.70518 -26.43298 -24.83976 -22.86370 -21.61173 -21.14655 -20.09961 -19.90146 -19.30115 -17.36804 -17.32362 -16.93064 -16.20074 -15.99104 -15.48505 -15.31203 -14.74490 -14.43855 -14.21072 -14.12293 -13.75490 -13.65857 -13.38580 -12.96247 -12.79677 -12.73443 -12.64053 -12.50702 -12.20028 -11.91509 -11.81789 -11.78434 -11.52021 -11.41161 -11.19497 -10.81078 -10.74598 -10.65607 -10.43685 -10.24921 -9.77042 -9.70858 -9.56734 -9.24168 -9.12099 -8.58607 -7.62061 -7.52962 -6.93432 -4.48834 1.79527 2.18088 2.51042 2.71609 2.76149 2.97076 3.13297 3.18083 3.32433 3.33686 3.99587 4.13602 4.44208 4.51537 4.61359 4.65267 4.69827 5.00921 5.09427 5.21636 5.31558 5.34590 5.39610 5.46311 5.53225 5.59721 5.69541 5.71730 5.81038 5.85605 5.93803 6.08746 6.14044 6.19461 6.30796 6.55627 6.57574 6.71850 6.93106 6.95692 6.98475 7.20023 7.43520 7.64788 7.65411 7.74429 7.89587 8.13332 8.34893 8.48203 8.66854 8.81550 10.08492 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002535 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.304688 B =11042.442195 C =12007.418236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.155 3.845 3 C -0.164 4.164 4 N -0.368 5.368 5 C 0.048 3.952 6 C -0.245 4.245 7 C 0.075 3.925 8 C 0.151 3.849 9 O -0.359 6.359 10 C 0.463 3.537 11 O -0.491 6.491 12 C -0.042 4.042 13 C -0.181 4.181 14 C -0.063 4.063 15 C -0.244 4.244 16 C -0.076 4.076 17 C -0.233 4.233 18 C 0.110 3.890 19 C -0.444 4.444 20 H 0.089 0.911 21 C 0.085 3.915 22 N -0.806 5.806 23 Si 0.911 3.089 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.243 1.243 27 N -0.289 5.289 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.172 0.828 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 16.537 10.287 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.054 3.946 3 C -0.222 4.222 4 N -0.151 5.151 5 C -0.097 4.097 6 C -0.274 4.274 7 C -0.091 4.091 8 C 0.075 3.925 9 O -0.277 6.277 10 C 0.306 3.694 11 O -0.376 6.376 12 C -0.080 4.080 13 C -0.182 4.182 14 C -0.082 4.082 15 C -0.263 4.263 16 C -0.095 4.095 17 C -0.252 4.252 18 C 0.107 3.893 19 C -0.472 4.472 20 H 0.107 0.893 21 C -0.134 4.134 22 N -0.429 5.429 23 Si 0.737 3.263 24 H -0.197 1.197 25 H -0.219 1.219 26 H -0.166 1.166 27 N -0.113 5.113 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.118 0.882 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.863 15.786 11.753 19.700 hybrid contribution 0.074 -0.178 -1.240 1.255 sum 0.937 15.607 10.513 18.841 Atomic orbital electron populations 1.22253 0.93633 1.03506 1.02998 1.21240 0.94807 0.92633 0.85947 1.22191 1.02371 0.94006 1.03622 1.48782 1.50981 1.06920 1.08466 1.22451 1.01675 0.99996 0.85577 1.21388 1.12287 0.91723 1.01982 1.21827 0.99472 0.96092 0.91683 1.20612 1.00977 0.91243 0.79701 1.86444 1.77170 1.39947 1.24114 1.24343 0.73394 0.80698 0.91010 1.90663 1.48683 1.31121 1.67122 1.19986 1.03231 0.97749 0.87005 1.19066 0.92801 0.93915 1.12466 1.20460 0.94331 0.95806 0.97572 1.20339 0.97329 0.95421 1.13223 1.20623 0.93561 0.97258 0.98038 1.21004 0.94811 0.97352 1.11997 1.17492 0.93021 0.89999 0.88776 1.19436 0.90079 1.22841 1.14887 0.89299 1.26176 0.94435 0.92821 1.00011 1.69711 1.04547 1.33863 1.34826 0.86322 0.80223 0.79924 0.79788 1.19730 1.21918 1.16575 1.77246 1.21715 0.93445 1.18930 0.91479 0.91821 0.90538 0.88050 0.90007 0.91434 0.91452 0.81092 0.82768 0.89629 0.89319 0.86956 0.88985 0.88846 0.88874 0.88909 0.88226 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 9.52 37.16 0.35 -0.76 16 2 C 0.16 1.20 3.93 -67.93 -0.27 0.93 16 3 C -0.16 -0.81 8.84 37.15 0.33 -0.48 16 4 N -0.37 -4.25 3.52 -54.86 -0.19 -4.44 16 5 C 0.05 0.52 10.59 -17.22 -0.18 0.34 16 6 C -0.24 -3.27 10.14 -40.02 -0.41 -3.67 16 7 C 0.07 1.15 7.19 -82.41 -0.59 0.56 16 8 C 0.15 2.47 6.09 36.01 0.22 2.69 16 9 O -0.36 -6.35 9.56 -39.25 -0.38 -6.73 16 10 C 0.46 9.39 7.55 36.00 0.27 9.67 16 11 O -0.49 -11.63 15.78 -18.75 -0.30 -11.92 16 12 C -0.04 -0.82 5.30 -29.04 -0.15 -0.97 16 13 C -0.18 -4.12 4.43 -103.91 -0.46 -4.58 16 14 C -0.06 -1.35 9.66 -39.66 -0.38 -1.73 16 15 C -0.24 -5.18 10.05 -39.29 -0.39 -5.57 16 16 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 17 C -0.23 -5.74 7.17 -38.87 -0.28 -6.02 16 18 C 0.11 2.80 5.10 -106.82 -0.55 2.26 16 19 C -0.44 -11.90 8.56 -37.74 -0.32 -12.23 16 20 H 0.09 2.51 6.99 -52.49 -0.37 2.14 16 21 C 0.08 2.22 5.41 -17.34 -0.09 2.12 16 22 N -0.81 -21.51 13.93 55.55 0.77 -20.74 16 23 Si 0.91 20.75 24.52 -169.99 -4.17 16.59 16 24 H -0.27 -6.08 6.71 56.52 0.38 -5.70 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.24 -5.60 6.85 56.52 0.39 -5.22 16 27 N -0.29 -4.35 12.58 33.67 0.42 -3.92 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 35 H 0.17 1.18 7.27 -52.49 -0.38 0.80 16 36 H 0.15 1.94 7.90 -52.49 -0.41 1.52 16 37 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 39 H 0.11 2.17 7.15 -51.93 -0.37 1.80 16 40 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.10 2.45 4.74 -52.49 -0.25 2.20 16 45 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -31.95 376.95 -7.85 -39.80 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.39 Total: 5.24 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -3.30 Total: -19.56 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 1.00 Total: -29.10 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.67 Total: -18.65 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.17 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.95 -7.85 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.139 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds