Wall clock time and date at job start Tue Mar 31 2020 16:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47266 * 2 1 4 4 N 1.46497 * 109.47238 * 239.99619 * 2 1 3 5 5 C 1.34951 * 126.03709 * 84.71481 * 4 2 1 6 6 C 1.35314 * 107.74707 * 179.83705 * 5 4 2 7 7 C 1.39866 * 107.91788 * 0.42947 * 6 5 4 8 8 C 1.50702 * 125.89654 * 179.71676 * 7 6 5 9 9 O 1.45201 * 109.47310 * 359.97438 * 8 7 6 10 10 C 1.34227 * 117.00200 * 180.02562 * 9 8 7 11 11 O 1.20826 * 120.00051 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.50699 * 109.47229 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.13140 * 265.00416 * 13 12 10 15 15 C 1.38619 * 120.24993 * 179.97438 * 14 13 12 16 16 C 1.38655 * 120.50132 * 0.02562 * 15 14 13 17 17 C 1.37605 * 120.24885 * 0.03081 * 16 15 14 18 18 C 1.40705 * 120.12584 * 84.72482 * 13 12 10 19 19 C 1.41396 * 120.24317 * 0.02562 * 18 13 12 20 20 H 1.07995 * 119.99857 * 329.69678 * 19 18 13 21 21 C 1.39946 * 119.99924 * 149.70152 * 19 18 13 22 22 N 1.30828 * 119.99497 * 162.01320 * 21 19 18 23 23 Si 1.86799 * 120.00259 * 342.01013 * 21 19 18 24 24 H 1.48493 * 109.46967 * 95.40194 * 23 21 19 25 25 H 1.48494 * 109.47180 * 215.40287 * 23 21 19 26 26 H 1.48501 * 109.46883 * 335.40350 * 23 21 19 27 27 N 1.30832 * 108.20705 * 359.73495 * 7 6 5 28 28 H 1.09007 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46763 * 60.00394 * 1 2 3 30 30 H 1.08994 * 109.46951 * 300.00161 * 1 2 3 31 31 H 1.09004 * 109.46660 * 120.00118 * 2 1 3 32 32 H 1.08998 * 109.46980 * 59.99349 * 3 2 1 33 33 H 1.08996 * 109.47409 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47278 * 300.00200 * 3 2 1 35 35 H 1.07999 * 126.12315 * 0.02562 * 5 4 2 36 36 H 1.08001 * 126.04116 * 180.16503 * 6 5 4 37 37 H 1.09004 * 109.47234 * 119.99733 * 8 7 6 38 38 H 1.09003 * 109.46956 * 239.99416 * 8 7 6 39 39 H 1.09001 * 109.47403 * 300.00250 * 12 10 9 40 40 H 1.08995 * 109.47197 * 60.00134 * 12 10 9 41 41 H 1.07999 * 119.87547 * 359.97438 * 14 13 12 42 42 H 1.07994 * 119.74455 * 179.97438 * 15 14 13 43 43 H 1.08000 * 119.87472 * 179.97438 * 16 15 14 44 44 H 1.07996 * 120.12675 * 179.97438 * 17 16 15 45 45 H 0.96999 * 119.99313 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6569 -1.1052 -3.2420 7 6 2.7681 -2.2874 -2.5029 8 6 3.2457 -3.6165 -3.0286 9 8 3.5780 -3.4892 -4.4363 10 6 4.0222 -4.5917 -5.0598 11 8 4.1302 -5.6289 -4.4494 12 6 4.3873 -4.5358 -6.5208 13 6 4.8538 -5.8951 -6.9745 14 6 6.1969 -6.1954 -6.9887 15 6 6.6286 -7.4451 -7.4050 16 6 5.7152 -8.4058 -7.8118 17 6 4.3677 -8.1271 -7.8069 18 6 3.9175 -6.8641 -7.3796 19 6 2.5348 -6.5687 -7.3641 20 1 2.1397 -5.8716 -6.6400 21 6 1.6783 -7.1798 -8.2869 22 7 0.3883 -7.1969 -8.0701 23 14 2.3771 -7.9708 -9.8281 24 1 2.5711 -9.4243 -9.5941 25 1 1.4335 -7.7728 -10.9574 26 1 3.6823 -7.3440 -10.1579 27 7 2.3857 -2.0401 -1.2764 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.9891 0.8861 -2.6857 36 1 2.8979 -0.9846 -4.2879 37 1 4.1295 -3.9306 -2.4733 38 1 2.4574 -4.3596 -2.9075 39 1 3.5148 -4.2379 -7.1023 40 1 5.1870 -3.8099 -6.6680 41 1 6.9171 -5.4546 -6.6743 42 1 7.6844 -7.6719 -7.4133 43 1 6.0628 -9.3760 -8.1346 44 1 3.6581 -8.8767 -8.1245 45 1 -0.2054 -7.6202 -8.7099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777164772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:05 Heat of formation + Delta-G solvation = -12.312157 kcal Electronic energy + Delta-G solvation = -26770.821788 eV Core-core repulsion = 22947.027600 eV Total energy + Delta-G solvation = -3823.794188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34210 -41.44629 -39.62248 -37.62050 -36.65498 -35.49538 -33.70441 -32.27745 -32.14733 -30.95896 -29.25697 -28.24663 -27.79878 -26.66530 -23.67107 -23.32320 -22.79705 -21.23959 -21.07107 -20.69667 -19.26012 -18.51877 -18.18231 -17.71947 -17.57872 -16.98174 -16.36188 -16.14169 -15.88994 -15.51910 -15.45811 -15.08719 -14.73735 -14.63172 -14.44502 -14.10642 -13.87853 -13.73204 -13.70846 -13.29607 -13.19386 -13.09959 -12.93560 -12.81928 -12.69393 -12.51613 -12.37627 -12.10829 -11.99062 -11.89804 -11.68843 -11.53802 -11.46215 -11.38789 -10.96843 -10.28622 -9.56068 -9.40565 -9.34117 -8.86812 -6.46872 0.71113 0.82710 0.90358 1.26951 1.28679 1.34332 1.42748 1.51341 1.70379 1.92192 2.14768 2.64881 3.35887 3.55852 3.67409 3.90260 3.92264 3.94436 4.09127 4.13285 4.15656 4.27446 4.27790 4.44803 4.49662 4.56833 4.64334 4.73320 4.73636 4.78119 4.82185 4.90028 4.93229 4.94686 5.06694 5.16005 5.16591 5.22380 5.36589 5.40533 5.54174 5.67595 5.86285 5.94365 6.04686 6.14875 6.27932 6.45101 6.62093 6.77787 6.87507 6.89561 8.21138 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.002535 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.304688 B =11042.442195 C =12007.418236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 C -0.156 4.156 4 N -0.362 5.362 5 C 0.069 3.931 6 C -0.271 4.271 7 C 0.053 3.947 8 C 0.153 3.847 9 O -0.348 6.348 10 C 0.468 3.532 11 O -0.532 6.532 12 C -0.042 4.042 13 C -0.186 4.186 14 C -0.071 4.071 15 C -0.230 4.230 16 C -0.086 4.086 17 C -0.256 4.256 18 C 0.085 3.915 19 C -0.472 4.472 20 H 0.055 0.945 21 C 0.047 3.953 22 N -0.851 5.851 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.247 1.247 27 N -0.324 5.324 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.217 0.783 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 18.768 10.207 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.214 4.214 4 N -0.145 5.145 5 C -0.077 4.077 6 C -0.300 4.300 7 C -0.112 4.112 8 C 0.077 3.923 9 O -0.265 6.265 10 C 0.313 3.687 11 O -0.420 6.420 12 C -0.079 4.079 13 C -0.188 4.188 14 C -0.089 4.089 15 C -0.249 4.249 16 C -0.104 4.104 17 C -0.275 4.275 18 C 0.082 3.918 19 C -0.502 4.502 20 H 0.073 0.927 21 C -0.167 4.167 22 N -0.477 5.477 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.170 1.170 27 N -0.149 5.149 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.175 0.825 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.010 18.034 11.686 21.699 hybrid contribution -0.439 -0.756 -1.027 1.348 sum 2.571 17.278 10.660 20.464 Atomic orbital electron populations 1.22233 0.92715 1.02304 1.04620 1.21678 0.95525 0.94016 0.84414 1.22190 1.01924 0.91810 1.05499 1.49199 1.49590 1.05795 1.09940 1.23050 0.98992 1.01210 0.84466 1.21572 1.14050 0.91767 1.02638 1.21674 1.00964 0.96020 0.92500 1.20574 1.00582 0.92263 0.78839 1.86420 1.76467 1.38649 1.24940 1.24503 0.72448 0.80446 0.91347 1.90642 1.50686 1.32568 1.68137 1.20069 1.04542 0.97346 0.85960 1.19483 0.93460 0.94725 1.11098 1.20942 0.94236 0.96975 0.96699 1.20902 0.99115 0.94765 1.10145 1.21017 0.92660 0.99077 0.97639 1.21146 0.96173 0.97033 1.13116 1.17737 0.92908 0.91222 0.89912 1.19348 0.91383 1.23834 1.15589 0.92675 1.26835 0.94545 0.93225 1.02126 1.69750 1.05554 1.36149 1.36291 0.85485 0.79435 0.79121 0.77024 1.19287 1.20504 1.17031 1.77154 1.22832 0.95938 1.18982 0.94064 0.91391 0.87711 0.88462 0.87568 0.92080 0.90160 0.76660 0.82469 0.89371 0.91164 0.87478 0.84460 0.85047 0.85133 0.85899 0.89029 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.52 71.98 0.69 -1.18 16 2 C 0.14 1.95 3.93 44.99 0.18 2.13 16 3 C -0.16 -1.03 8.84 71.98 0.64 -0.40 16 4 N -0.36 -7.98 3.52 -327.49 -1.15 -9.13 16 5 C 0.07 1.35 10.59 83.54 0.89 2.24 16 6 C -0.27 -7.14 10.14 21.99 0.22 -6.92 16 7 C 0.05 1.67 7.19 43.10 0.31 1.98 16 8 C 0.15 5.33 6.09 71.24 0.43 5.77 16 9 O -0.35 -12.68 9.56 -51.39 -0.49 -13.18 16 10 C 0.47 19.41 7.55 71.24 0.54 19.95 16 11 O -0.53 -26.10 15.78 21.96 0.35 -25.75 16 12 C -0.04 -1.61 5.30 29.10 0.15 -1.46 16 13 C -0.19 -8.34 4.43 -19.40 -0.09 -8.42 16 14 C -0.07 -2.77 9.66 22.22 0.21 -2.55 16 15 C -0.23 -8.87 10.05 22.46 0.23 -8.65 16 16 C -0.09 -3.61 10.02 22.22 0.22 -3.39 16 17 C -0.26 -12.54 7.17 22.73 0.16 -12.38 16 18 C 0.08 4.38 5.10 -21.29 -0.11 4.27 16 19 C -0.47 -26.61 8.56 23.46 0.20 -26.41 16 20 H 0.06 3.36 6.99 -2.91 -0.02 3.34 16 21 C 0.05 2.56 5.41 85.26 0.46 3.02 16 22 N -0.85 -47.78 13.93 21.83 0.30 -47.47 16 23 Si 0.97 43.66 24.52 68.60 1.68 45.34 16 24 H -0.27 -11.72 6.71 99.48 0.67 -11.06 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.25 -11.17 6.85 99.48 0.68 -10.49 16 27 N -0.32 -9.95 12.58 -47.39 -0.60 -10.55 16 28 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.35 7.16 -2.39 -0.02 0.33 16 35 H 0.22 2.09 7.27 -2.91 -0.02 2.07 16 36 H 0.16 3.89 7.90 -2.91 -0.02 3.87 16 37 H 0.09 2.95 8.13 -2.39 -0.02 2.93 16 38 H 0.07 2.65 8.13 -2.39 -0.02 2.63 16 39 H 0.11 4.24 7.15 -2.39 -0.02 4.22 16 40 H 0.14 3.91 8.05 -2.39 -0.02 3.89 16 41 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 43 H 0.12 4.35 8.06 -2.91 -0.02 4.32 16 44 H 0.09 4.55 4.74 -2.91 -0.01 4.53 16 45 H 0.29 14.76 8.30 -92.71 -0.77 14.00 16 Total: -1.00 -73.71 376.95 6.36 -67.35 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.93 Total: 25.79 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 5.33 Total: -32.41 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -1.45 Total: -67.16 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.14 Total: -38.92 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.68 Total: 45.34 kcal Total: -73.71 6.36 -67.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777164772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.039 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds