Wall clock time and date at job start Tue Mar 31 2020 15:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.09000 * 109.47078 * 304.99674 * 3 2 1 5 5 C 1.50698 * 109.47059 * 184.99998 * 3 2 1 6 6 H 1.07997 * 120.00449 * 239.99803 * 5 3 2 7 7 C 1.37878 * 120.00095 * 60.00021 * 5 3 2 8 8 N 1.31523 * 120.00103 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00446 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46923 * 59.99666 * 9 7 5 11 11 H 1.48494 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46956 * 300.00178 * 9 7 5 13 13 O 1.45195 * 109.47232 * 64.99906 * 3 2 1 14 14 C 1.34225 * 117.00412 * 269.99806 * 13 3 2 15 15 O 1.20824 * 119.99660 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00552 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.36703 * 60.89885 * 16 14 13 18 18 C 1.54377 * 110.41315 * 298.55223 * 16 14 13 19 19 C 1.54254 * 105.06372 * 217.36357 * 18 16 14 20 20 C 1.54385 * 105.05956 * 359.97438 * 19 18 16 21 21 N 1.48559 * 110.41430 * 183.37585 * 16 14 13 22 22 C 1.39190 * 111.00094 * 277.81767 * 21 16 14 23 23 C 1.39180 * 119.92580 * 201.37429 * 22 21 16 24 24 C 1.37644 * 120.07409 * 179.76671 * 23 22 21 25 25 C 1.39814 * 119.92320 * 0.49033 * 24 23 22 26 26 C 1.43205 * 120.07117 * 179.78726 * 25 24 23 27 27 N 9.08007 * 104.81205 * 174.46446 * 3 1 2 28 28 C 1.39804 * 119.85034 * 359.76366 * 25 24 23 29 29 C 1.37650 * 119.92289 * 0.02562 * 28 25 24 30 30 H 1.09000 * 109.47386 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.46846 * 299.99818 * 1 2 3 32 32 H 1.09003 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47107 * 119.99570 * 2 1 3 34 34 H 1.09000 * 109.47079 * 239.99728 * 2 1 3 35 35 H 0.96996 * 120.00336 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.32622 * 336.26078 * 18 16 14 37 37 H 1.08999 * 110.32753 * 98.36807 * 18 16 14 38 38 H 1.09008 * 110.32784 * 118.88975 * 19 18 16 39 39 H 1.08999 * 110.33146 * 241.00470 * 19 18 16 40 40 H 1.09000 * 110.41197 * 142.62877 * 20 19 18 41 41 H 1.09001 * 110.41185 * 265.07256 * 20 19 18 42 42 H 1.07994 * 119.95891 * 0.02562 * 23 22 21 43 43 H 1.07997 * 120.03806 * 180.27940 * 24 23 22 44 44 H 1.08000 * 120.03868 * 179.97438 * 28 25 24 45 45 H 1.08003 * 119.95830 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1474 -0.2350 11 1 6.3977 0.2167 -2.6504 12 1 6.4994 2.2816 -1.3822 13 8 1.6558 2.0917 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2192 2.7370 0.2655 16 6 0.0069 3.4216 2.5086 17 1 0.7060 4.2103 2.7867 18 6 -0.1474 2.4077 3.6625 19 6 -1.3936 2.8746 4.4425 20 6 -1.8871 4.1319 3.6948 21 7 -1.3565 3.9790 2.3152 22 6 -1.3053 5.2070 1.6619 23 6 -2.3711 6.0957 1.7695 24 6 -2.3216 7.3128 1.1286 25 6 -1.2036 7.6517 0.3605 26 6 -1.1508 8.9152 -0.3114 27 7 -1.1093 9.9167 -0.8468 28 6 -0.1372 6.7544 0.2502 29 6 -0.1913 5.5407 0.8973 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.8292 -0.0610 -2.9500 36 1 -0.3028 1.4041 3.2664 37 1 0.7329 2.4283 4.3049 38 1 -2.1608 2.1004 4.4292 39 1 -1.1261 3.1241 5.4693 40 1 -2.9765 4.1631 3.6812 41 1 -1.4859 5.0326 4.1594 42 1 -3.2359 5.8317 2.3599 43 1 -3.1470 8.0038 1.2162 44 1 0.7277 7.0128 -0.3427 45 1 0.6320 4.8469 0.8122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:19 Heat of formation + Delta-G solvation = -19.758681 kcal Electronic energy + Delta-G solvation = -28246.028121 eV Core-core repulsion = 24421.911028 eV Total energy + Delta-G solvation = -3824.117094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11425 -39.33771 -38.15847 -36.30754 -35.73411 -33.58887 -32.97736 -31.64035 -31.33570 -29.69696 -29.06672 -27.25731 -24.38706 -23.37953 -23.21377 -22.41407 -20.91302 -20.36738 -19.39006 -18.98721 -17.58248 -17.36858 -16.60286 -15.94779 -15.62264 -15.45484 -14.81007 -14.58936 -14.30912 -14.17286 -14.06829 -13.77765 -13.64474 -13.50493 -12.97243 -12.86638 -12.83341 -12.70742 -12.32322 -12.16595 -11.88068 -11.69628 -11.51877 -11.46616 -11.31727 -11.22644 -11.05904 -10.96885 -10.83029 -10.67765 -10.32469 -10.11066 -9.81980 -9.55105 -9.39017 -9.18085 -8.85388 -8.49069 -8.04622 -6.22042 -4.29823 0.67899 1.23347 2.61142 2.77288 2.86992 3.11457 3.23322 3.28031 3.31289 3.74564 3.83022 3.92943 4.25656 4.27304 4.42384 4.69424 4.75159 4.77532 4.92664 5.09110 5.09791 5.15384 5.27001 5.28317 5.42713 5.49139 5.59764 5.63563 5.76686 5.85816 5.91274 5.92480 6.06189 6.21025 6.21561 6.28212 6.42747 6.43350 6.61521 6.83071 6.93280 6.96908 7.13772 7.21200 7.43688 7.57572 7.69464 7.90681 8.11374 8.58535 8.83875 9.35755 10.84420 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003875 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.891047 B = 7224.060325 C = 8948.231862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.524 4.524 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.355 6.355 14 C 0.455 3.545 15 O -0.489 6.489 16 C 0.065 3.935 17 H 0.099 0.901 18 C -0.112 4.112 19 C -0.125 4.125 20 C 0.037 3.963 21 N -0.443 5.443 22 C 0.148 3.852 23 C -0.155 4.155 24 C -0.043 4.043 25 C -0.070 4.070 26 C 0.264 3.736 27 N -0.434 5.434 28 C -0.035 4.035 29 C -0.154 4.154 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 6.926 14.079 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.737 3.263 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.271 6.271 14 C 0.295 3.705 15 O -0.377 6.377 16 C -0.043 4.043 17 H 0.117 0.883 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.088 4.088 21 N -0.157 5.157 22 C 0.047 3.953 23 C -0.175 4.175 24 C -0.065 4.065 25 C -0.075 4.075 26 C -0.051 4.051 27 N -0.110 5.110 28 C -0.056 4.056 29 C -0.174 4.174 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.903 7.907 12.455 18.345 hybrid contribution 1.272 -0.164 0.065 1.284 sum -9.631 7.744 12.521 17.592 Atomic orbital electron populations 1.21855 0.98243 0.98973 1.00847 1.22019 0.92678 0.99327 1.03325 1.20677 0.94920 0.88757 0.78431 0.93521 1.20988 0.89630 1.39282 1.06288 0.91395 1.24872 0.99162 0.94718 0.95050 1.69878 1.35489 1.37590 1.09436 0.86363 0.83933 0.78510 0.77518 1.19930 1.21022 1.19983 1.86467 1.33762 1.62500 1.44397 1.22618 0.81335 0.77821 0.88709 1.90674 1.54850 1.57262 1.34913 1.22428 0.89811 0.98395 0.93678 0.88312 1.22263 0.98917 0.99035 0.94837 1.22367 0.97827 0.97171 0.98936 1.23302 1.01486 0.98510 0.85475 1.61647 1.18145 1.19694 1.16182 1.19286 0.93595 0.87351 0.95025 1.20675 0.98743 0.93659 1.04467 1.20911 0.95875 0.96100 0.93573 1.15927 0.98162 0.89479 1.03898 1.25745 0.93455 0.92741 0.93111 1.81248 1.08004 1.11755 1.09975 1.21027 0.96823 0.92037 0.95739 1.21158 0.98458 0.97208 1.00609 0.92830 0.94847 0.94906 0.94020 0.87384 0.92286 0.89815 0.89222 0.90246 0.90223 0.88745 0.91874 0.84754 0.84997 0.84791 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.57 37.16 0.32 -2.69 16 2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16 3 C 0.22 5.65 2.25 -27.88 -0.06 5.59 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.94 16 5 C -0.52 -14.03 8.90 -34.44 -0.31 -14.34 16 6 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.39 11.30 55.43 0.63 -23.77 16 9 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 O -0.36 -7.73 9.78 -39.24 -0.38 -8.11 16 14 C 0.45 8.54 3.75 36.00 0.13 8.68 16 15 O -0.49 -10.52 12.42 -18.75 -0.23 -10.75 16 16 C 0.06 0.87 2.23 -67.23 -0.15 0.72 16 17 H 0.10 1.19 7.26 -51.93 -0.38 0.81 16 18 C -0.11 -1.22 6.52 -25.35 -0.17 -1.38 16 19 C -0.13 -0.96 7.00 -25.35 -0.18 -1.14 16 20 C 0.04 0.30 5.42 -2.16 -0.01 0.29 16 21 N -0.44 -5.48 4.78 -160.56 -0.77 -6.25 16 22 C 0.15 1.83 5.41 -83.82 -0.45 1.37 16 23 C -0.15 -1.50 9.12 -39.45 -0.36 -1.86 16 24 C -0.04 -0.41 9.75 -39.21 -0.38 -0.79 16 25 C -0.07 -0.78 5.74 -106.79 -0.61 -1.40 16 26 C 0.26 3.32 15.33 -22.46 -0.34 2.97 16 27 N -0.43 -6.34 18.54 41.85 0.78 -5.56 16 28 C -0.04 -0.43 9.75 -39.21 -0.38 -0.81 16 29 C -0.15 -2.10 7.89 -39.45 -0.31 -2.41 16 30 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 31 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.63 7.60 -51.93 -0.39 0.23 16 41 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 42 H 0.13 0.98 7.07 -52.49 -0.37 0.61 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.13 2.10 4.84 -52.48 -0.25 1.84 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -30.91 368.53 -9.08 -39.98 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.12 Total: 2.41 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.51 Total: -8.95 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.63 Total: -35.57 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.62 Total: -18.86 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.91 -9.08 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.224 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds