Wall clock time and date at job start Tue Mar 31 2020 15:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46982 * 2 1 4 4 H 1.09000 * 109.47078 * 304.99674 * 3 2 1 5 5 C 1.50698 * 109.47059 * 184.99998 * 3 2 1 6 6 H 1.07997 * 120.00449 * 239.99803 * 5 3 2 7 7 C 1.37878 * 120.00095 * 60.00021 * 5 3 2 8 8 N 1.31523 * 120.00103 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00446 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46923 * 59.99666 * 9 7 5 11 11 H 1.48494 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46956 * 300.00178 * 9 7 5 13 13 O 1.45195 * 109.47232 * 64.99906 * 3 2 1 14 14 C 1.34225 * 117.00412 * 269.99806 * 13 3 2 15 15 O 1.20824 * 119.99660 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00552 * 179.97438 * 14 13 3 17 17 H 1.09002 * 110.36703 * 60.89885 * 16 14 13 18 18 C 1.54377 * 110.41315 * 298.55223 * 16 14 13 19 19 C 1.54254 * 105.06372 * 217.36357 * 18 16 14 20 20 C 1.54385 * 105.05956 * 359.97438 * 19 18 16 21 21 N 1.48559 * 110.41430 * 183.37585 * 16 14 13 22 22 C 1.39190 * 111.00094 * 277.81767 * 21 16 14 23 23 C 1.39180 * 119.92580 * 201.37429 * 22 21 16 24 24 C 1.37644 * 120.07409 * 179.76671 * 23 22 21 25 25 C 1.39814 * 119.92320 * 0.49033 * 24 23 22 26 26 C 1.43205 * 120.07117 * 179.78726 * 25 24 23 27 27 N 9.08007 * 104.81205 * 174.46446 * 3 1 2 28 28 C 1.39804 * 119.85034 * 359.76366 * 25 24 23 29 29 C 1.37650 * 119.92289 * 0.02562 * 28 25 24 30 30 H 1.09000 * 109.47386 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.46846 * 299.99818 * 1 2 3 32 32 H 1.09003 * 109.47395 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47107 * 119.99570 * 2 1 3 34 34 H 1.09000 * 109.47079 * 239.99728 * 2 1 3 35 35 H 0.96996 * 120.00336 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.32622 * 336.26078 * 18 16 14 37 37 H 1.08999 * 110.32753 * 98.36807 * 18 16 14 38 38 H 1.09008 * 110.32784 * 118.88975 * 19 18 16 39 39 H 1.08999 * 110.33146 * 241.00470 * 19 18 16 40 40 H 1.09000 * 110.41197 * 142.62877 * 20 19 18 41 41 H 1.09001 * 110.41185 * 265.07256 * 20 19 18 42 42 H 1.07994 * 119.95891 * 0.02562 * 23 22 21 43 43 H 1.07997 * 120.03806 * 180.27940 * 24 23 22 44 44 H 1.08000 * 120.03868 * 179.97438 * 28 25 24 45 45 H 1.08003 * 119.95830 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8784 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8813 -1.3819 10 1 6.5975 0.1474 -0.2350 11 1 6.3977 0.2167 -2.6504 12 1 6.4994 2.2816 -1.3822 13 8 1.6558 2.0917 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2192 2.7370 0.2655 16 6 0.0069 3.4216 2.5086 17 1 0.7060 4.2103 2.7867 18 6 -0.1474 2.4077 3.6625 19 6 -1.3936 2.8746 4.4425 20 6 -1.8871 4.1319 3.6948 21 7 -1.3565 3.9790 2.3152 22 6 -1.3053 5.2070 1.6619 23 6 -2.3711 6.0957 1.7695 24 6 -2.3216 7.3128 1.1286 25 6 -1.2036 7.6517 0.3605 26 6 -1.1508 8.9152 -0.3114 27 7 -1.1093 9.9167 -0.8468 28 6 -0.1372 6.7544 0.2502 29 6 -0.1913 5.5407 0.8973 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.8292 -0.0610 -2.9500 36 1 -0.3028 1.4041 3.2664 37 1 0.7329 2.4283 4.3049 38 1 -2.1608 2.1004 4.4292 39 1 -1.1261 3.1241 5.4693 40 1 -2.9765 4.1631 3.6812 41 1 -1.4859 5.0326 4.1594 42 1 -3.2359 5.8317 2.3599 43 1 -3.1470 8.0038 1.2162 44 1 0.7277 7.0128 -0.3427 45 1 0.6320 4.8469 0.8122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:17 Heat of formation + Delta-G solvation = -36.361260 kcal Electronic energy + Delta-G solvation = -28246.748063 eV Core-core repulsion = 24421.911028 eV Total energy + Delta-G solvation = -3824.837036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21163 -40.70469 -39.14685 -37.45802 -37.30482 -35.49388 -33.85827 -33.37230 -32.42982 -30.68347 -29.94580 -29.17256 -25.59186 -24.97054 -24.07387 -23.68422 -22.04969 -21.61519 -20.91228 -19.90599 -18.96298 -18.65744 -18.24705 -17.48173 -16.94446 -16.59777 -16.39094 -15.64875 -15.44910 -15.14981 -15.07156 -14.88273 -14.71473 -14.63796 -14.42801 -14.29434 -13.95305 -13.75226 -13.59357 -13.33986 -13.27905 -13.11578 -13.02639 -12.83397 -12.75202 -12.58366 -12.50875 -12.21625 -12.15698 -11.98157 -11.73930 -11.61106 -11.39051 -11.08307 -10.85890 -10.80382 -10.50908 -10.05092 -8.94611 -8.26617 -6.43434 -0.22492 0.36815 1.38904 1.41691 1.44703 1.52422 1.60649 1.76656 1.91571 2.38629 2.75205 2.86494 2.98184 3.03315 3.42829 3.50989 3.85530 3.88441 3.93214 4.06950 4.23946 4.27975 4.37998 4.40417 4.41269 4.46467 4.53537 4.59714 4.70602 4.82969 4.84889 4.86528 5.02155 5.04794 5.07070 5.10895 5.18926 5.23512 5.32173 5.33235 5.40411 5.52365 5.56512 5.68638 5.77189 6.00591 6.09821 6.16127 6.44864 6.62343 7.05352 7.29144 8.79548 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010952 B = 0.003875 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.891047 B = 7224.060325 C = 8948.231862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 C 0.231 3.769 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.270 1.270 13 O -0.363 6.363 14 C 0.451 3.549 15 O -0.521 6.521 16 C 0.072 3.928 17 H 0.112 0.888 18 C -0.114 4.114 19 C -0.115 4.115 20 C 0.035 3.965 21 N -0.461 5.461 22 C 0.142 3.858 23 C -0.144 4.144 24 C -0.026 4.026 25 C -0.076 4.076 26 C 0.285 3.715 27 N -0.473 5.473 28 C -0.041 4.041 29 C -0.181 4.181 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.269 0.731 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.083 0.917 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.130 0.870 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.913 7.455 16.850 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.021 0.979 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.800 3.200 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.195 1.195 13 O -0.280 6.280 14 C 0.294 3.706 15 O -0.410 6.410 16 C -0.036 4.036 17 H 0.129 0.871 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.088 4.088 21 N -0.175 5.175 22 C 0.041 3.959 23 C -0.165 4.165 24 C -0.047 4.047 25 C -0.081 4.081 26 C -0.028 4.028 27 N -0.149 5.149 28 C -0.063 4.063 29 C -0.202 4.202 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.101 0.899 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.148 0.852 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.357 8.441 15.257 21.371 hybrid contribution 1.647 -0.324 -0.795 1.857 sum -10.710 8.117 14.462 19.742 Atomic orbital electron populations 1.21679 0.96257 1.00376 1.00041 1.21851 0.94382 0.98196 1.02227 1.20278 0.94271 0.89147 0.78552 0.97859 1.21307 0.90636 1.39924 1.06831 0.91530 1.25759 1.03953 0.93949 0.94420 1.70012 1.37418 1.37923 1.09831 0.85329 0.78066 0.78733 0.77891 1.18733 1.20441 1.19494 1.86446 1.35832 1.63185 1.42489 1.23760 0.79761 0.76741 0.90370 1.90647 1.55362 1.58347 1.36669 1.22474 0.91033 0.98924 0.91176 0.87086 1.22346 1.01558 0.97038 0.94267 1.22391 0.96021 0.97035 0.99832 1.23551 1.02804 0.99506 0.82934 1.61672 1.17173 1.19793 1.18875 1.19494 0.93824 0.87862 0.94737 1.21003 0.98622 0.92740 1.04091 1.21285 0.95561 0.96368 0.91441 1.15946 0.98759 0.88665 1.04748 1.25856 0.92296 0.92483 0.92208 1.81268 1.09299 1.13033 1.11322 1.20999 0.97401 0.92050 0.95819 1.20978 0.98890 0.97417 1.02911 0.94987 0.94207 0.92247 0.93491 0.89844 0.92132 0.92044 0.87728 0.89791 0.87200 0.86425 0.89864 0.81318 0.81628 0.85195 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.57 71.98 0.62 -4.87 16 2 C -0.13 -6.37 5.49 30.59 0.17 -6.20 16 3 C 0.23 12.28 2.25 29.85 0.07 12.35 16 4 H 0.00 0.22 7.16 -2.39 -0.02 0.20 16 5 C -0.55 -30.59 8.90 25.60 0.23 -30.36 16 6 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.07 11.30 21.45 0.24 -51.83 16 9 Si 0.98 42.45 29.54 68.60 2.03 44.48 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 O -0.36 -16.58 9.78 -51.37 -0.50 -17.09 16 14 C 0.45 17.68 3.75 71.23 0.27 17.94 16 15 O -0.52 -23.67 12.42 21.97 0.27 -23.40 16 16 C 0.07 1.91 2.23 44.31 0.10 2.01 16 17 H 0.11 2.65 7.26 -2.39 -0.02 2.63 16 18 C -0.11 -2.28 6.52 31.49 0.21 -2.08 16 19 C -0.12 -1.34 7.00 31.49 0.22 -1.12 16 20 C 0.04 0.43 5.42 86.45 0.47 0.90 16 21 N -0.46 -10.58 4.78 -661.89 -3.16 -13.75 16 22 C 0.14 3.28 5.41 38.43 0.21 3.49 16 23 C -0.14 -2.28 9.12 22.36 0.20 -2.07 16 24 C -0.03 -0.40 9.75 22.51 0.22 -0.18 16 25 C -0.08 -1.62 5.74 -21.27 -0.12 -1.74 16 26 C 0.29 6.96 15.33 88.33 1.35 8.31 16 27 N -0.47 -13.66 18.54 19.01 0.35 -13.31 16 28 C -0.04 -1.04 9.75 22.51 0.22 -0.82 16 29 C -0.18 -5.09 7.89 22.36 0.18 -4.92 16 30 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 31 H 0.04 1.64 6.06 -2.39 -0.01 1.63 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 4.57 5.95 -2.39 -0.01 4.55 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 36 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 0.93 7.60 -2.39 -0.02 0.92 16 41 H 0.08 0.73 7.94 -2.39 -0.02 0.71 16 42 H 0.17 1.52 7.07 -2.91 -0.02 1.50 16 43 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 45 H 0.10 3.45 4.84 -2.91 -0.01 3.44 16 Total: -1.00 -71.93 368.53 5.29 -66.65 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.01 Total: 16.11 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.05 Total: -7.87 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.57 Total: -78.88 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -0.23 Total: -40.48 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.93 5.29 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.284 kcal (2) G-P(sol) polarization free energy of solvation -71.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds