Wall clock time and date at job start Tue Mar 31 2020 15:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46986 * 2 1 4 4 H 1.09002 * 109.47244 * 54.34432 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.34750 * 3 2 1 6 6 H 1.07991 * 120.00424 * 33.01107 * 5 3 2 7 7 C 1.37881 * 119.99615 * 213.01530 * 5 3 2 8 8 N 1.31508 * 120.00157 * 352.76437 * 7 5 3 9 9 Si 1.86799 * 119.99791 * 172.77341 * 7 5 3 10 10 H 1.48491 * 109.47615 * 59.99254 * 9 7 5 11 11 H 1.48503 * 109.46846 * 299.99239 * 9 7 5 12 12 H 1.48498 * 109.46813 * 179.97438 * 9 7 5 13 13 O 1.45198 * 109.46857 * 294.34408 * 3 2 1 14 14 C 1.34229 * 117.00103 * 89.99903 * 13 3 2 15 15 O 1.20827 * 120.00330 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00306 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.35991 * 60.90010 * 16 14 13 18 18 C 1.54375 * 110.41296 * 298.55200 * 16 14 13 19 19 C 1.54262 * 105.06113 * 217.36735 * 18 16 14 20 20 C 1.54378 * 105.05512 * 359.97438 * 19 18 16 21 21 N 1.48551 * 110.41293 * 183.37472 * 16 14 13 22 22 C 1.39194 * 110.99993 * 277.81834 * 21 16 14 23 23 C 1.39177 * 119.92450 * 8.42229 * 22 21 16 24 24 C 1.37645 * 120.07246 * 179.76080 * 23 22 21 25 25 C 1.39802 * 119.92707 * 0.48880 * 24 23 22 26 26 C 1.43200 * 120.07876 * 179.78468 * 25 24 23 27 27 N 8.45587 * 19.75150 * 266.62475 * 2 1 3 28 28 C 1.39811 * 119.84985 * 359.76288 * 25 24 23 29 29 C 1.37646 * 119.92297 * 0.02562 * 28 25 24 30 30 H 1.08999 * 109.47184 * 300.00261 * 1 2 3 31 31 H 1.08996 * 109.47214 * 60.00705 * 1 2 3 32 32 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47590 * 239.99411 * 2 1 3 34 34 H 1.08996 * 109.47214 * 119.99295 * 2 1 3 35 35 H 0.97003 * 120.00216 * 4.52595 * 8 7 5 36 36 H 1.09001 * 110.32398 * 336.25828 * 18 16 14 37 37 H 1.09002 * 110.32412 * 98.36482 * 18 16 14 38 38 H 1.08995 * 110.32613 * 118.89768 * 19 18 16 39 39 H 1.09000 * 110.32181 * 241.00347 * 19 18 16 40 40 H 1.09005 * 110.40847 * 142.63272 * 20 19 18 41 41 H 1.09004 * 110.41309 * 265.07043 * 20 19 18 42 42 H 1.07998 * 119.95892 * 359.97438 * 23 22 21 43 43 H 1.08003 * 120.04124 * 180.27469 * 24 23 22 44 44 H 1.08001 * 120.03956 * 179.97438 * 28 25 24 45 45 H 1.08003 * 119.96367 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 0.8350 5 6 3.5404 1.4449 0.1399 6 1 4.1243 0.6452 -0.2912 7 6 4.1679 2.4681 0.8186 8 7 3.4763 3.5122 1.2198 9 14 6.0004 2.3713 1.1678 10 1 6.7446 2.2815 -0.1140 11 1 6.2846 1.1680 1.9904 12 1 6.4288 3.5875 1.9043 13 8 1.6692 2.0869 -1.2472 14 6 0.4863 2.7205 -1.2777 15 8 -0.2160 2.7366 -0.2946 16 6 0.0345 3.4128 -2.5378 17 1 -0.0557 2.6952 -3.3533 18 6 1.0209 4.5380 -2.9172 19 6 0.1379 5.6759 -3.4697 20 6 -1.3078 5.1420 -3.3781 21 7 -1.2582 4.1088 -2.3115 22 6 -2.3273 3.2245 -2.4240 23 6 -2.0889 1.8581 -2.5391 24 6 -3.1439 0.9805 -2.6456 25 6 -4.4557 1.4638 -2.6483 26 6 -5.5555 0.5541 -2.7636 27 7 -6.4284 -0.1682 -2.8526 28 6 -4.6914 2.8375 -2.5379 29 6 -3.6319 3.7092 -2.4273 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.5143 3.5331 1.0969 36 1 1.5667 4.8761 -2.0363 37 1 1.7157 4.1905 -3.6819 38 1 0.2502 6.5723 -2.8600 39 1 0.3992 5.8886 -4.5063 40 1 -1.9919 5.9434 -3.0990 41 1 -1.6093 4.6965 -4.3261 42 1 -1.0751 1.4858 -2.5414 43 1 -2.9584 -0.0801 -2.7304 44 1 -5.7036 3.2143 -2.5401 45 1 -3.8133 4.7705 -2.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:26 Heat of formation + Delta-G solvation = -25.635687 kcal Electronic energy + Delta-G solvation = -28587.987984 eV Core-core repulsion = 24763.616044 eV Total energy + Delta-G solvation = -3824.371940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.02697 -39.24664 -38.12694 -36.34093 -35.63075 -33.46288 -32.89747 -32.08516 -31.58769 -29.59630 -29.04429 -26.94745 -24.29962 -23.29850 -23.18545 -22.48344 -20.94061 -20.48461 -19.53122 -19.00949 -17.52843 -17.31716 -17.05006 -15.89248 -15.70014 -15.31911 -14.66586 -14.45432 -14.23369 -14.00221 -13.91437 -13.79159 -13.67155 -13.43272 -13.37441 -13.12762 -12.84546 -12.72067 -12.58167 -12.15761 -11.95833 -11.83746 -11.58382 -11.39207 -11.33681 -11.21942 -10.93269 -10.85822 -10.75360 -10.63388 -10.23303 -10.06679 -9.94641 -9.49299 -9.22169 -9.14902 -8.75493 -8.58454 -8.06498 -6.69186 -4.47222 0.65144 1.19517 2.56247 2.76552 3.02688 3.18573 3.32014 3.35879 3.52398 3.72295 3.81463 3.97597 4.32045 4.35601 4.52345 4.67096 4.77635 4.83225 4.98090 5.08347 5.12161 5.23570 5.29006 5.36217 5.44009 5.59057 5.64195 5.72960 5.79908 5.84779 5.88257 5.89294 5.96434 6.04723 6.12696 6.16152 6.22316 6.41400 6.50271 6.62167 6.65315 6.75229 6.86730 7.00448 7.08441 7.38907 7.66168 7.91842 8.17732 8.53116 8.86777 9.31276 10.68717 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.003754 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.429037 B = 7457.476176 C = 8857.068407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.189 3.811 4 H 0.055 0.945 5 C -0.588 4.588 6 H 0.061 0.939 7 C 0.030 3.970 8 N -0.880 5.880 9 Si 1.074 2.926 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.279 1.279 13 O -0.359 6.359 14 C 0.452 3.548 15 O -0.501 6.501 16 C 0.058 3.942 17 H 0.095 0.905 18 C -0.112 4.112 19 C -0.125 4.125 20 C 0.040 3.960 21 N -0.445 5.445 22 C 0.154 3.846 23 C -0.167 4.167 24 C -0.036 4.036 25 C -0.070 4.070 26 C 0.264 3.736 27 N -0.434 5.434 28 C -0.043 4.043 29 C -0.145 4.145 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.276 0.724 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 3.298 -11.539 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.138 3.862 4 H 0.072 0.928 5 C -0.624 4.624 6 H 0.080 0.920 7 C -0.179 4.179 8 N -0.514 5.514 9 Si 0.900 3.100 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.204 1.204 13 O -0.275 6.275 14 C 0.293 3.707 15 O -0.390 6.390 16 C -0.051 4.051 17 H 0.112 0.888 18 C -0.150 4.150 19 C -0.163 4.163 20 C -0.084 4.084 21 N -0.158 5.158 22 C 0.053 3.947 23 C -0.187 4.187 24 C -0.057 4.057 25 C -0.075 4.075 26 C -0.050 4.050 27 N -0.110 5.110 28 C -0.064 4.064 29 C -0.165 4.165 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.357 3.286 -10.157 14.196 hybrid contribution -0.987 -0.984 -1.049 1.744 sum -10.345 2.302 -11.206 15.423 Atomic orbital electron populations 1.21913 0.97100 0.99542 1.01916 1.21863 0.94096 0.98755 1.01527 1.20929 0.95296 0.88317 0.81658 0.92759 1.21986 0.90575 1.12109 1.37733 0.92036 1.26209 1.07478 0.91401 0.92820 1.70775 1.09807 1.27439 1.43378 0.83482 0.73205 0.76456 0.76861 1.20964 1.20871 1.20439 1.87017 1.32931 1.62059 1.45514 1.22806 0.81786 0.77440 0.88677 1.90608 1.55074 1.57611 1.35675 1.22560 0.89738 0.97097 0.95667 0.88788 1.22240 0.96779 0.93138 1.02843 1.22367 0.93012 0.99040 1.01854 1.23262 0.98962 0.94314 0.91911 1.61762 1.00124 1.11374 1.42586 1.19280 0.91650 0.91391 0.92341 1.21228 0.99882 0.92515 1.05107 1.20962 0.90219 0.99974 0.94525 1.15910 0.88483 0.90774 1.12328 1.25748 0.92989 0.93175 0.93122 1.81252 1.10372 1.09257 1.10120 1.20940 0.99370 0.90757 0.95359 1.20646 0.90120 1.00389 1.05346 0.92543 0.93744 0.94320 0.92823 0.91322 0.91225 0.89510 0.89483 0.90205 0.90342 0.88819 0.92178 0.85013 0.85044 0.84928 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.58 37.16 0.32 -2.48 16 2 C -0.12 -2.65 5.63 -26.73 -0.15 -2.80 16 3 C 0.19 4.69 2.02 -27.88 -0.06 4.64 16 4 H 0.05 1.51 5.61 -51.93 -0.29 1.22 16 5 C -0.59 -15.76 8.69 -34.44 -0.30 -16.06 16 6 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 7 C 0.03 0.81 5.45 -17.82 -0.10 0.72 16 8 N -0.88 -25.48 13.62 55.43 0.76 -24.72 16 9 Si 1.07 23.48 29.91 -169.99 -5.08 18.39 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 O -0.36 -8.29 9.79 -39.25 -0.38 -8.68 16 14 C 0.45 9.16 4.25 36.01 0.15 9.32 16 15 O -0.50 -11.35 12.99 -18.75 -0.24 -11.60 16 16 C 0.06 0.88 2.21 -67.23 -0.15 0.73 16 17 H 0.09 1.24 6.51 -51.93 -0.34 0.91 16 18 C -0.11 -1.52 6.52 -25.35 -0.17 -1.68 16 19 C -0.12 -1.23 7.00 -25.35 -0.18 -1.41 16 20 C 0.04 0.39 5.79 -2.17 -0.01 0.37 16 21 N -0.44 -6.09 4.75 -160.57 -0.76 -6.85 16 22 C 0.15 1.98 5.16 -83.82 -0.43 1.55 16 23 C -0.17 -2.19 7.87 -39.45 -0.31 -2.50 16 24 C -0.04 -0.41 9.75 -39.21 -0.38 -0.79 16 25 C -0.07 -0.78 5.74 -106.80 -0.61 -1.39 16 26 C 0.26 3.23 15.33 -22.46 -0.34 2.89 16 27 N -0.43 -6.17 18.54 41.86 0.78 -5.40 16 28 C -0.04 -0.42 9.75 -39.21 -0.38 -0.80 16 29 C -0.14 -1.51 9.27 -39.45 -0.37 -1.88 16 30 H 0.06 1.15 7.83 -51.93 -0.41 0.74 16 31 H 0.04 0.82 4.63 -51.93 -0.24 0.58 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.28 8.21 6.64 -40.82 -0.27 7.94 16 36 H 0.09 1.45 7.85 -51.93 -0.41 1.05 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 41 H 0.06 0.49 7.97 -51.93 -0.41 0.08 16 42 H 0.13 1.88 3.94 -52.49 -0.21 1.68 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.14 1.15 7.65 -52.48 -0.40 0.75 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -31.77 369.19 -8.82 -40.59 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.97 Total: 4.26 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.47 Total: -11.57 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.77 Total: -36.97 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.63 Total: -20.27 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.08 Total: 18.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.77 -8.82 -40.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.955 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds