Wall clock time and date at job start Tue Mar 31 2020 15:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46986 * 2 1 4 4 H 1.09002 * 109.47244 * 54.34432 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.34750 * 3 2 1 6 6 H 1.07991 * 120.00424 * 33.01107 * 5 3 2 7 7 C 1.37881 * 119.99615 * 213.01530 * 5 3 2 8 8 N 1.31508 * 120.00157 * 352.76437 * 7 5 3 9 9 Si 1.86799 * 119.99791 * 172.77341 * 7 5 3 10 10 H 1.48491 * 109.47615 * 59.99254 * 9 7 5 11 11 H 1.48503 * 109.46846 * 299.99239 * 9 7 5 12 12 H 1.48498 * 109.46813 * 179.97438 * 9 7 5 13 13 O 1.45198 * 109.46857 * 294.34408 * 3 2 1 14 14 C 1.34229 * 117.00103 * 89.99903 * 13 3 2 15 15 O 1.20827 * 120.00330 * 0.02562 * 14 13 3 16 16 C 1.50704 * 120.00306 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.35991 * 60.90010 * 16 14 13 18 18 C 1.54375 * 110.41296 * 298.55200 * 16 14 13 19 19 C 1.54262 * 105.06113 * 217.36735 * 18 16 14 20 20 C 1.54378 * 105.05512 * 359.97438 * 19 18 16 21 21 N 1.48551 * 110.41293 * 183.37472 * 16 14 13 22 22 C 1.39194 * 110.99993 * 277.81834 * 21 16 14 23 23 C 1.39177 * 119.92450 * 8.42229 * 22 21 16 24 24 C 1.37645 * 120.07246 * 179.76080 * 23 22 21 25 25 C 1.39802 * 119.92707 * 0.48880 * 24 23 22 26 26 C 1.43200 * 120.07876 * 179.78468 * 25 24 23 27 27 N 8.45587 * 19.75150 * 266.62475 * 2 1 3 28 28 C 1.39811 * 119.84985 * 359.76288 * 25 24 23 29 29 C 1.37646 * 119.92297 * 0.02562 * 28 25 24 30 30 H 1.08999 * 109.47184 * 300.00261 * 1 2 3 31 31 H 1.08996 * 109.47214 * 60.00705 * 1 2 3 32 32 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47590 * 239.99411 * 2 1 3 34 34 H 1.08996 * 109.47214 * 119.99295 * 2 1 3 35 35 H 0.97003 * 120.00216 * 4.52595 * 8 7 5 36 36 H 1.09001 * 110.32398 * 336.25828 * 18 16 14 37 37 H 1.09002 * 110.32412 * 98.36482 * 18 16 14 38 38 H 1.08995 * 110.32613 * 118.89768 * 19 18 16 39 39 H 1.09000 * 110.32181 * 241.00347 * 19 18 16 40 40 H 1.09005 * 110.40847 * 142.63272 * 20 19 18 41 41 H 1.09004 * 110.41309 * 265.07043 * 20 19 18 42 42 H 1.07998 * 119.95892 * 359.97438 * 23 22 21 43 43 H 1.08003 * 120.04124 * 180.27469 * 24 23 22 44 44 H 1.08001 * 120.03956 * 179.97438 * 28 25 24 45 45 H 1.08003 * 119.96367 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9848 0.8350 5 6 3.5404 1.4449 0.1399 6 1 4.1243 0.6452 -0.2912 7 6 4.1679 2.4681 0.8186 8 7 3.4763 3.5122 1.2198 9 14 6.0004 2.3713 1.1678 10 1 6.7446 2.2815 -0.1140 11 1 6.2846 1.1680 1.9904 12 1 6.4288 3.5875 1.9043 13 8 1.6692 2.0869 -1.2472 14 6 0.4863 2.7205 -1.2777 15 8 -0.2160 2.7366 -0.2946 16 6 0.0345 3.4128 -2.5378 17 1 -0.0557 2.6952 -3.3533 18 6 1.0209 4.5380 -2.9172 19 6 0.1379 5.6759 -3.4697 20 6 -1.3078 5.1420 -3.3781 21 7 -1.2582 4.1088 -2.3115 22 6 -2.3273 3.2245 -2.4240 23 6 -2.0889 1.8581 -2.5391 24 6 -3.1439 0.9805 -2.6456 25 6 -4.4557 1.4638 -2.6483 26 6 -5.5555 0.5541 -2.7636 27 7 -6.4284 -0.1682 -2.8526 28 6 -4.6914 2.8375 -2.5379 29 6 -3.6319 3.7092 -2.4273 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.5143 3.5331 1.0969 36 1 1.5667 4.8761 -2.0363 37 1 1.7157 4.1905 -3.6819 38 1 0.2502 6.5723 -2.8600 39 1 0.3992 5.8886 -4.5063 40 1 -1.9919 5.9434 -3.0990 41 1 -1.6093 4.6965 -4.3261 42 1 -1.0751 1.4858 -2.5414 43 1 -2.9584 -0.0801 -2.7304 44 1 -5.7036 3.2143 -2.5401 45 1 -3.8133 4.7705 -2.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:24 Heat of formation + Delta-G solvation = -43.077760 kcal Electronic energy + Delta-G solvation = -28588.744329 eV Core-core repulsion = 24763.616044 eV Total energy + Delta-G solvation = -3825.128285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18937 -40.69009 -39.18619 -37.46465 -37.29226 -35.35385 -34.02498 -33.77762 -32.48870 -30.66926 -29.98095 -28.82019 -25.57178 -24.97008 -24.06957 -23.76283 -22.17552 -21.77991 -21.02938 -19.92602 -19.31914 -18.60048 -18.49817 -17.43393 -16.97841 -16.42710 -15.76683 -15.75307 -15.54849 -15.29267 -15.16380 -15.00670 -14.97034 -14.69324 -14.49781 -14.35271 -14.30535 -13.83119 -13.69288 -13.49883 -13.10353 -12.99407 -12.96789 -12.75849 -12.64035 -12.54706 -12.50538 -12.28695 -12.11114 -11.94819 -11.83759 -11.59899 -11.17663 -11.11396 -10.82150 -10.75491 -10.49636 -10.07229 -9.00346 -8.85056 -6.64047 -0.24254 0.34639 1.42484 1.53626 1.56744 1.59809 1.80775 1.82136 1.93223 2.49549 2.71525 2.83154 2.93464 3.10673 3.39090 3.54809 3.75475 3.86829 3.89862 4.03712 4.15682 4.16962 4.18977 4.26410 4.31667 4.40853 4.47947 4.50053 4.62634 4.68471 4.79215 4.81472 4.94626 4.97895 4.99592 5.01740 5.03980 5.11213 5.13766 5.25612 5.29563 5.34421 5.56338 5.71506 5.72980 5.94078 6.08503 6.13067 6.35068 6.43936 7.13391 7.24177 8.51424 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.003754 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.429037 B = 7457.476176 C = 8857.068407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.190 3.810 4 H 0.015 0.985 5 C -0.607 4.607 6 H 0.065 0.935 7 C -0.018 4.018 8 N -0.910 5.910 9 Si 1.122 2.878 10 H -0.264 1.264 11 H -0.263 1.263 12 H -0.283 1.283 13 O -0.371 6.371 14 C 0.448 3.552 15 O -0.529 6.529 16 C 0.067 3.933 17 H 0.116 0.884 18 C -0.114 4.114 19 C -0.115 4.115 20 C 0.041 3.959 21 N -0.466 5.466 22 C 0.140 3.860 23 C -0.186 4.186 24 C -0.035 4.035 25 C -0.075 4.075 26 C 0.286 3.714 27 N -0.471 5.471 28 C -0.028 4.028 29 C -0.141 4.141 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.255 0.745 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 3.741 -13.547 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.139 3.861 4 H 0.033 0.967 5 C -0.643 4.643 6 H 0.083 0.917 7 C -0.220 4.220 8 N -0.545 5.545 9 Si 0.941 3.059 10 H -0.188 1.188 11 H -0.188 1.188 12 H -0.208 1.208 13 O -0.288 6.288 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.042 4.042 17 H 0.133 0.867 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.082 4.082 21 N -0.180 5.180 22 C 0.040 3.960 23 C -0.207 4.207 24 C -0.056 4.056 25 C -0.079 4.079 26 C -0.028 4.028 27 N -0.147 5.147 28 C -0.049 4.049 29 C -0.161 4.161 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.181 0.819 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.231 3.722 -12.193 16.346 hybrid contribution -0.820 -1.120 -0.444 1.458 sum -11.051 2.602 -12.637 16.988 Atomic orbital electron populations 1.21788 0.95333 1.01290 1.00926 1.21797 0.95658 0.96359 1.01999 1.20714 0.94622 0.89819 0.80983 0.96726 1.22312 0.91720 1.12274 1.37993 0.91706 1.27740 1.11489 0.90711 0.92047 1.70923 1.08636 1.29013 1.45953 0.82908 0.68258 0.76940 0.77813 1.18829 1.18798 1.20828 1.86881 1.35013 1.62921 1.44003 1.23745 0.80265 0.76492 0.90372 1.90583 1.55495 1.58402 1.37401 1.22515 0.91267 0.97616 0.92786 0.86677 1.22271 0.97173 0.94259 1.01580 1.22383 0.92321 0.97127 1.03460 1.23465 0.99113 0.93805 0.91845 1.61788 0.99417 1.12104 1.44731 1.19507 0.92422 0.91208 0.92891 1.21130 0.99367 0.93181 1.07033 1.21033 0.90186 1.00347 0.94062 1.15952 0.87710 0.91321 1.12954 1.25811 0.92496 0.92497 0.91994 1.81279 1.11603 1.10287 1.11580 1.21256 1.00667 0.89829 0.93183 1.20888 0.88979 1.01727 1.04489 0.94671 0.93642 0.91039 0.91670 0.91333 0.93449 0.93833 0.88094 0.90430 0.87029 0.86645 0.89848 0.86866 0.84181 0.81943 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.58 71.98 0.62 -4.60 16 2 C -0.12 -5.20 5.63 30.59 0.17 -5.03 16 3 C 0.19 9.90 2.02 29.85 0.06 9.96 16 4 H 0.01 0.88 5.61 -2.39 -0.01 0.87 16 5 C -0.61 -33.50 8.69 25.60 0.22 -33.27 16 6 H 0.06 3.45 7.82 -2.92 -0.02 3.42 16 7 C -0.02 -1.02 5.45 84.66 0.46 -0.56 16 8 N -0.91 -55.24 13.62 21.45 0.29 -54.95 16 9 Si 1.12 47.58 29.91 68.60 2.05 49.63 16 10 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 11 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 O -0.37 -17.92 9.79 -51.40 -0.50 -18.42 16 14 C 0.45 18.89 4.25 71.24 0.30 19.20 16 15 O -0.53 -25.14 12.99 21.96 0.29 -24.86 16 16 C 0.07 2.01 2.21 44.32 0.10 2.11 16 17 H 0.12 2.96 6.51 -2.39 -0.02 2.94 16 18 C -0.11 -3.09 6.52 31.49 0.21 -2.88 16 19 C -0.12 -1.99 7.00 31.49 0.22 -1.77 16 20 C 0.04 0.66 5.79 86.45 0.50 1.16 16 21 N -0.47 -12.14 4.75 -661.93 -3.14 -15.28 16 22 C 0.14 3.36 5.16 38.43 0.20 3.56 16 23 C -0.19 -4.73 7.87 22.36 0.18 -4.55 16 24 C -0.04 -0.77 9.75 22.51 0.22 -0.55 16 25 C -0.07 -1.48 5.74 -21.27 -0.12 -1.61 16 26 C 0.29 6.50 15.33 88.33 1.35 7.85 16 27 N -0.47 -12.84 18.54 19.01 0.35 -12.49 16 28 C -0.03 -0.46 9.75 22.51 0.22 -0.24 16 29 C -0.14 -2.50 9.27 22.36 0.21 -2.29 16 30 H 0.03 1.47 7.83 -2.39 -0.02 1.45 16 31 H 0.04 1.71 4.63 -2.39 -0.01 1.70 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.25 16.26 6.64 -92.71 -0.62 15.65 16 36 H 0.04 1.54 7.85 -2.39 -0.02 1.52 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.12 1.39 7.86 -2.38 -0.02 1.38 16 41 H 0.08 1.00 7.97 -2.38 -0.02 0.98 16 42 H 0.11 3.25 3.94 -2.91 -0.01 3.24 16 43 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.16 2.04 7.65 -2.91 -0.02 2.02 16 Total: -1.00 -73.85 369.19 5.62 -68.23 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.17 Total: 21.65 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.11 Total: -13.52 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -2.50 Total: -82.72 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.22 Total: -43.28 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.05 Total: 49.63 kcal Total: -73.85 5.62 -68.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.151 kcal (2) G-P(sol) polarization free energy of solvation -73.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds