Wall clock time and date at job start Tue Mar 31 2020 15:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 H 1.09005 * 109.47111 * 54.99866 * 3 2 1 5 5 C 1.50700 * 109.47149 * 174.99981 * 3 2 1 6 6 H 1.07998 * 119.99547 * 119.99965 * 5 3 2 7 7 C 1.37879 * 120.00079 * 300.00444 * 5 3 2 8 8 N 1.31508 * 119.99671 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47064 * 89.99805 * 9 7 5 11 11 H 1.48500 * 109.47042 * 209.99981 * 9 7 5 12 12 H 1.48498 * 109.46912 * 329.99895 * 9 7 5 13 13 O 1.45203 * 109.47208 * 295.00225 * 3 2 1 14 14 C 1.34233 * 116.99869 * 90.00016 * 13 3 2 15 15 O 1.20831 * 120.00116 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99793 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.33319 * 302.25082 * 16 14 13 18 18 C 1.54901 * 110.37309 * 64.62835 * 16 14 13 19 19 C 1.55143 * 101.65325 * 155.89764 * 18 16 14 20 20 C 1.54319 * 103.01895 * 324.34761 * 19 18 16 21 21 N 1.47442 * 107.23225 * 22.28038 * 20 19 18 22 22 C 1.39188 * 110.99774 * 123.25910 * 21 20 19 23 23 C 1.39174 * 119.92749 * 215.88041 * 22 21 20 24 24 C 1.37655 * 120.07727 * 179.72448 * 23 22 21 25 25 C 1.39800 * 119.91974 * 0.54871 * 24 23 22 26 26 C 1.43208 * 120.07336 * 179.70316 * 25 24 23 27 27 N 9.48204 * 108.58386 * 176.58825 * 3 1 2 28 28 C 1.39808 * 119.85713 * 359.72252 * 25 24 23 29 29 C 1.37655 * 119.91698 * 0.02562 * 28 25 24 30 30 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47600 * 299.99330 * 1 2 3 32 32 H 1.08998 * 109.47379 * 59.99935 * 1 2 3 33 33 H 1.08998 * 109.47379 * 120.00065 * 2 1 3 34 34 H 1.09000 * 109.46893 * 240.00863 * 2 1 3 35 35 H 0.97004 * 119.99807 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.99066 * 273.98529 * 18 16 14 37 37 H 1.08998 * 110.99357 * 37.80535 * 18 16 14 38 38 H 1.08997 * 110.70811 * 205.95992 * 19 18 16 39 39 H 1.09004 * 110.85657 * 82.79957 * 19 18 16 40 40 H 1.09001 * 109.88116 * 262.87710 * 20 19 18 41 41 H 1.08998 * 110.02082 * 141.76647 * 20 19 18 42 42 H 1.08004 * 119.95804 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.03552 * 180.28067 * 24 23 22 44 44 H 1.07994 * 120.04561 * 179.97438 * 28 25 24 45 45 H 1.08005 * 119.95738 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1131 2.0836 11 1 6.4391 -0.3109 2.1544 12 1 6.6130 0.8397 0.0268 13 8 1.6557 2.0917 -1.2407 14 6 0.4725 2.7254 -1.2559 15 8 -0.2190 2.7377 -0.2651 16 6 0.0072 3.4226 -2.5083 17 1 0.7345 4.1738 -2.8161 18 6 -0.2234 2.3945 -3.6438 19 6 -1.2397 3.1449 -4.5442 20 6 -2.1088 3.9105 -3.5244 21 7 -1.3153 4.0461 -2.2891 22 6 -1.1824 5.3832 -1.9260 23 6 0.0027 5.8319 -1.3505 24 6 0.1396 7.1548 -0.9954 25 6 -0.9177 8.0455 -1.2029 26 6 -0.7812 9.4211 -0.8289 27 7 -0.6727 10.5125 -0.5349 28 6 -2.1089 7.5903 -1.7761 29 6 -2.2371 6.2672 -2.1336 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 3.8293 -0.0604 2.9502 36 1 0.7024 2.1942 -4.1830 37 1 -0.6538 1.4721 -3.2539 38 1 -1.8448 2.4393 -5.1134 39 1 -0.7285 3.8382 -5.2121 40 1 -3.0208 3.3497 -3.3196 41 1 -2.3598 4.8969 -3.9141 42 1 0.8174 5.1421 -1.1860 43 1 1.0612 7.5032 -0.5530 44 1 -2.9278 8.2756 -1.9374 45 1 -3.1569 5.9149 -2.5767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:38 Heat of formation + Delta-G solvation = -19.769763 kcal Electronic energy + Delta-G solvation = -28103.275593 eV Core-core repulsion = 24279.158019 eV Total energy + Delta-G solvation = -3824.117574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13539 -39.38391 -38.17778 -36.33861 -35.68356 -33.57303 -32.94999 -31.77241 -31.36175 -29.71426 -29.09544 -27.26444 -24.36886 -23.39816 -23.30020 -22.45825 -20.90484 -20.41191 -19.39768 -18.99752 -17.63167 -17.39246 -16.56521 -15.90715 -15.67128 -15.40968 -14.80505 -14.70919 -14.40669 -14.16508 -14.07868 -13.90380 -13.63606 -13.28422 -13.02407 -12.96460 -12.87991 -12.72639 -12.40297 -12.15957 -11.96772 -11.62581 -11.49636 -11.46183 -11.30849 -11.21408 -11.13004 -10.97090 -10.95694 -10.68604 -10.30840 -10.12095 -9.80872 -9.52076 -9.36408 -9.22834 -8.83748 -8.48841 -8.01009 -6.21753 -4.29236 0.66462 1.18045 2.59121 2.74780 2.91190 3.06570 3.22190 3.28661 3.32486 3.71929 3.82177 3.94207 4.22896 4.30221 4.36495 4.65331 4.67254 4.70151 4.92482 5.06997 5.09789 5.12611 5.24616 5.26600 5.40408 5.52587 5.55574 5.61192 5.74918 5.79488 5.90001 5.90782 5.98909 6.17288 6.20756 6.27440 6.39995 6.43149 6.64061 6.83499 6.93395 6.96423 7.14030 7.22309 7.41305 7.58445 7.70236 7.92250 8.12208 8.61095 8.85806 9.36371 10.84851 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.003654 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.507843 B = 7661.993913 C = 9289.795002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.489 6.489 16 C 0.072 3.928 17 H 0.105 0.895 18 C -0.116 4.116 19 C -0.141 4.141 20 C 0.039 3.961 21 N -0.456 5.456 22 C 0.158 3.842 23 C -0.165 4.165 24 C -0.031 4.031 25 C -0.076 4.076 26 C 0.264 3.736 27 N -0.435 5.435 28 C -0.038 4.038 29 C -0.165 4.165 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 6.661 -14.165 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.064 0.936 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.736 3.264 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.294 3.706 15 O -0.376 6.376 16 C -0.035 4.035 17 H 0.122 0.878 18 C -0.154 4.154 19 C -0.179 4.179 20 C -0.086 4.086 21 N -0.167 5.167 22 C 0.056 3.944 23 C -0.186 4.186 24 C -0.052 4.052 25 C -0.081 4.081 26 C -0.050 4.050 27 N -0.111 5.111 28 C -0.059 4.059 29 C -0.186 4.186 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.961 7.848 -12.823 18.606 hybrid contribution 1.140 -0.298 -0.072 1.180 sum -9.822 7.549 -12.896 17.882 Atomic orbital electron populations 1.21854 0.98299 0.98946 1.00808 1.22016 0.92644 0.99356 1.03316 1.20673 0.94930 0.88729 0.78491 0.93554 1.21027 0.89640 1.39121 1.06269 0.91348 1.24876 0.99178 0.94731 0.95081 1.69886 1.35400 1.37714 1.09417 0.86306 0.83939 0.77743 0.78362 1.20397 1.20945 1.19584 1.86462 1.33842 1.62599 1.44355 1.22692 0.81263 0.77907 0.88766 1.90650 1.54955 1.57103 1.34901 1.22377 0.89973 0.97727 0.93468 0.87783 1.22686 1.00758 0.97747 0.94171 1.22830 0.97793 0.99656 0.97615 1.23183 0.97274 1.01741 0.86412 1.59559 1.14147 1.11364 1.31632 1.19332 0.93465 0.87088 0.94544 1.21015 0.97535 0.96032 1.03977 1.21002 0.97414 0.92083 0.94703 1.15906 0.97126 0.85812 1.09208 1.25708 0.93492 0.92659 0.93159 1.81217 1.07860 1.12051 1.09931 1.20914 0.95359 0.95409 0.94224 1.20713 0.99116 0.92522 1.06241 0.94901 0.92831 0.94914 0.87389 0.94018 0.92356 0.88528 0.89605 0.89589 0.90478 0.89163 0.90299 0.84834 0.84766 0.84995 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.57 37.16 0.32 -2.68 16 2 C -0.14 -3.23 5.49 -26.73 -0.15 -3.38 16 3 C 0.22 5.68 2.25 -27.88 -0.06 5.61 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.04 8.90 -34.44 -0.31 -14.35 16 6 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.46 11.29 55.43 0.63 -23.84 16 9 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 O -0.36 -7.79 9.81 -39.27 -0.39 -8.18 16 14 C 0.45 8.61 4.49 36.01 0.16 8.77 16 15 O -0.49 -10.73 13.63 -18.75 -0.26 -10.98 16 16 C 0.07 0.97 2.27 -67.34 -0.15 0.82 16 17 H 0.10 1.26 6.51 -51.93 -0.34 0.92 16 18 C -0.12 -1.23 6.48 -24.59 -0.16 -1.39 16 19 C -0.14 -1.03 6.94 -24.91 -0.17 -1.20 16 20 C 0.04 0.32 6.17 -2.84 -0.02 0.30 16 21 N -0.46 -5.63 4.44 -161.77 -0.72 -6.35 16 22 C 0.16 1.87 5.78 -83.82 -0.48 1.38 16 23 C -0.16 -2.09 8.52 -39.45 -0.34 -2.43 16 24 C -0.03 -0.35 9.75 -39.21 -0.38 -0.73 16 25 C -0.08 -0.80 5.74 -106.80 -0.61 -1.41 16 26 C 0.26 3.17 15.32 -22.49 -0.34 2.83 16 27 N -0.43 -6.13 18.53 41.82 0.78 -5.36 16 28 C -0.04 -0.34 9.75 -39.21 -0.38 -0.72 16 29 C -0.16 -1.53 8.56 -39.45 -0.34 -1.86 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.21 7.80 -51.93 -0.40 0.80 16 32 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 33 H 0.11 2.83 5.95 -51.93 -0.31 2.52 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.51 5.90 -51.93 -0.31 0.20 16 42 H 0.13 1.92 5.53 -52.48 -0.29 1.63 16 43 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.14 0.96 6.74 -52.48 -0.35 0.60 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -31.29 369.61 -8.96 -40.25 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.03 Total: 2.25 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.51 Total: -8.84 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.68 Total: -35.54 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.64 Total: -19.16 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.29 -8.96 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.481 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds