Wall clock time and date at job start Tue Mar 31 2020 15:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 H 1.09005 * 109.47111 * 54.99866 * 3 2 1 5 5 C 1.50700 * 109.47149 * 174.99981 * 3 2 1 6 6 H 1.07998 * 119.99547 * 119.99965 * 5 3 2 7 7 C 1.37879 * 120.00079 * 300.00444 * 5 3 2 8 8 N 1.31508 * 119.99671 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99879 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47064 * 89.99805 * 9 7 5 11 11 H 1.48500 * 109.47042 * 209.99981 * 9 7 5 12 12 H 1.48498 * 109.46912 * 329.99895 * 9 7 5 13 13 O 1.45203 * 109.47208 * 295.00225 * 3 2 1 14 14 C 1.34233 * 116.99869 * 90.00016 * 13 3 2 15 15 O 1.20831 * 120.00116 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99793 * 179.97438 * 14 13 3 17 17 H 1.08996 * 110.33319 * 302.25082 * 16 14 13 18 18 C 1.54901 * 110.37309 * 64.62835 * 16 14 13 19 19 C 1.55143 * 101.65325 * 155.89764 * 18 16 14 20 20 C 1.54319 * 103.01895 * 324.34761 * 19 18 16 21 21 N 1.47442 * 107.23225 * 22.28038 * 20 19 18 22 22 C 1.39188 * 110.99774 * 123.25910 * 21 20 19 23 23 C 1.39174 * 119.92749 * 215.88041 * 22 21 20 24 24 C 1.37655 * 120.07727 * 179.72448 * 23 22 21 25 25 C 1.39800 * 119.91974 * 0.54871 * 24 23 22 26 26 C 1.43208 * 120.07336 * 179.70316 * 25 24 23 27 27 N 9.48204 * 108.58386 * 176.58825 * 3 1 2 28 28 C 1.39808 * 119.85713 * 359.72252 * 25 24 23 29 29 C 1.37655 * 119.91698 * 0.02562 * 28 25 24 30 30 H 1.09003 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47600 * 299.99330 * 1 2 3 32 32 H 1.08998 * 109.47379 * 59.99935 * 1 2 3 33 33 H 1.08998 * 109.47379 * 120.00065 * 2 1 3 34 34 H 1.09000 * 109.46893 * 240.00863 * 2 1 3 35 35 H 0.97004 * 119.99807 * 180.02562 * 8 7 5 36 36 H 1.09001 * 110.99066 * 273.98529 * 18 16 14 37 37 H 1.08998 * 110.99357 * 37.80535 * 18 16 14 38 38 H 1.08997 * 110.70811 * 205.95992 * 19 18 16 39 39 H 1.09004 * 110.85657 * 82.79957 * 19 18 16 40 40 H 1.09001 * 109.88116 * 262.87710 * 20 19 18 41 41 H 1.08998 * 110.02082 * 141.76647 * 20 19 18 42 42 H 1.08004 * 119.95804 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.03552 * 180.28067 * 24 23 22 44 44 H 1.07994 * 120.04561 * 179.97438 * 28 25 24 45 45 H 1.08005 * 119.95738 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3375 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1131 2.0836 11 1 6.4391 -0.3109 2.1544 12 1 6.6130 0.8397 0.0268 13 8 1.6557 2.0917 -1.2407 14 6 0.4725 2.7254 -1.2559 15 8 -0.2190 2.7377 -0.2651 16 6 0.0072 3.4226 -2.5083 17 1 0.7345 4.1738 -2.8161 18 6 -0.2234 2.3945 -3.6438 19 6 -1.2397 3.1449 -4.5442 20 6 -2.1088 3.9105 -3.5244 21 7 -1.3153 4.0461 -2.2891 22 6 -1.1824 5.3832 -1.9260 23 6 0.0027 5.8319 -1.3505 24 6 0.1396 7.1548 -0.9954 25 6 -0.9177 8.0455 -1.2029 26 6 -0.7812 9.4211 -0.8289 27 7 -0.6727 10.5125 -0.5349 28 6 -2.1089 7.5903 -1.7761 29 6 -2.2371 6.2672 -2.1336 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 3.8293 -0.0604 2.9502 36 1 0.7024 2.1942 -4.1830 37 1 -0.6538 1.4721 -3.2539 38 1 -1.8448 2.4393 -5.1134 39 1 -0.7285 3.8382 -5.2121 40 1 -3.0208 3.3497 -3.3196 41 1 -2.3598 4.8969 -3.9141 42 1 0.8174 5.1421 -1.1860 43 1 1.0612 7.5032 -0.5530 44 1 -2.9278 8.2756 -1.9374 45 1 -3.1569 5.9149 -2.5767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:36 Heat of formation + Delta-G solvation = -36.423068 kcal Electronic energy + Delta-G solvation = -28103.997735 eV Core-core repulsion = 24279.158019 eV Total energy + Delta-G solvation = -3824.839716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.17616 -40.78836 -39.14326 -37.47298 -37.25550 -35.48726 -33.79951 -33.37034 -32.54333 -30.68160 -29.94574 -29.18462 -25.61008 -24.92164 -24.12436 -23.72080 -22.00524 -21.63252 -20.96573 -19.87211 -18.95401 -18.76687 -18.17162 -17.37134 -16.96590 -16.68093 -16.40448 -15.69590 -15.43592 -15.19338 -15.05503 -14.89445 -14.74922 -14.54774 -14.42755 -14.14174 -14.00679 -13.76892 -13.65132 -13.35568 -13.31732 -13.09711 -13.01186 -12.83373 -12.78236 -12.62919 -12.50154 -12.16366 -12.13312 -11.94788 -11.75418 -11.67828 -11.40793 -11.15052 -10.79939 -10.77174 -10.50944 -10.04193 -8.88197 -8.26584 -6.43208 -0.19400 0.36815 1.40429 1.42333 1.43422 1.54464 1.63548 1.75869 1.92103 2.38327 2.75694 2.89280 3.00414 3.03635 3.45230 3.47291 3.83960 3.90402 3.93258 4.03253 4.17610 4.27172 4.38286 4.40393 4.42162 4.46975 4.54109 4.59610 4.70099 4.84936 4.85415 4.87856 5.00134 5.05299 5.08345 5.10611 5.15349 5.23370 5.29999 5.34465 5.40781 5.52912 5.58253 5.69058 5.80253 6.01152 6.12935 6.16731 6.47464 6.63062 7.07041 7.29623 8.79913 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011546 B = 0.003654 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.507843 B = 7661.993913 C = 9289.795002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 C 0.230 3.770 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.261 1.261 13 O -0.363 6.363 14 C 0.450 3.550 15 O -0.524 6.524 16 C 0.080 3.920 17 H 0.116 0.884 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.034 3.966 21 N -0.476 5.476 22 C 0.149 3.851 23 C -0.190 4.190 24 C -0.033 4.033 25 C -0.082 4.082 26 C 0.286 3.714 27 N -0.475 5.475 28 C -0.021 4.021 29 C -0.156 4.156 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.269 0.731 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.165 0.835 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 7.049 -16.733 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.177 3.823 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.801 3.199 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.185 1.185 13 O -0.280 6.280 14 C 0.292 3.708 15 O -0.413 6.413 16 C -0.028 4.028 17 H 0.133 0.867 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.089 4.089 21 N -0.188 5.188 22 C 0.047 3.953 23 C -0.211 4.211 24 C -0.055 4.055 25 C -0.087 4.087 26 C -0.027 4.027 27 N -0.151 5.151 28 C -0.042 4.042 29 C -0.176 4.176 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.153 0.847 44 H 0.182 0.818 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.275 8.241 -15.421 21.363 hybrid contribution 1.467 -0.409 0.749 1.697 sum -10.808 7.832 -14.672 19.835 Atomic orbital electron populations 1.21683 0.96270 1.00412 1.00029 1.21848 0.94391 0.98143 1.02259 1.20288 0.94308 0.89177 0.78570 0.97989 1.21336 0.90608 1.39791 1.06815 0.91510 1.25769 1.04000 0.93961 0.94452 1.70017 1.37367 1.38020 1.09830 0.85265 0.78028 0.77896 0.78754 1.20017 1.20173 1.18521 1.86446 1.35846 1.63225 1.42447 1.23900 0.79662 0.76796 0.90432 1.90623 1.55538 1.58319 1.36781 1.22403 0.91167 0.98354 0.90876 0.86652 1.22760 1.02353 0.96685 0.93758 1.22833 0.96771 0.99831 0.96968 1.23401 0.96936 1.03581 0.84995 1.59531 1.13649 1.11577 1.34035 1.19539 0.93821 0.87400 0.94549 1.20877 0.97864 0.96189 1.06168 1.21007 0.97991 0.91795 0.94658 1.15938 0.97805 0.84834 1.10094 1.25821 0.92310 0.92576 0.92039 1.81239 1.09153 1.13278 1.11442 1.21265 0.95131 0.95778 0.92029 1.21005 0.99214 0.91977 1.05437 0.92160 0.95037 0.94187 0.89860 0.93403 0.92133 0.87696 0.91139 0.87355 0.88617 0.88410 0.87664 0.87629 0.84658 0.81784 0.81417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.57 71.98 0.62 -4.86 16 2 C -0.13 -6.35 5.49 30.59 0.17 -6.18 16 3 C 0.23 12.25 2.25 29.85 0.07 12.32 16 4 H 0.00 0.14 7.16 -2.38 -0.02 0.12 16 5 C -0.55 -30.52 8.90 25.60 0.23 -30.29 16 6 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.10 11.29 21.45 0.24 -51.86 16 9 Si 0.98 42.45 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 O -0.36 -16.61 9.81 -51.45 -0.50 -17.12 16 14 C 0.45 17.75 4.49 71.24 0.32 18.07 16 15 O -0.52 -24.19 13.63 21.95 0.30 -23.89 16 16 C 0.08 2.12 2.27 44.64 0.10 2.22 16 17 H 0.12 2.79 6.51 -2.39 -0.02 2.78 16 18 C -0.12 -2.31 6.48 31.98 0.21 -2.10 16 19 C -0.13 -1.37 6.94 31.78 0.22 -1.15 16 20 C 0.03 0.44 6.17 86.65 0.53 0.98 16 21 N -0.48 -11.06 4.44 -665.73 -2.96 -14.01 16 22 C 0.15 3.31 5.78 38.42 0.22 3.53 16 23 C -0.19 -4.91 8.52 22.36 0.19 -4.72 16 24 C -0.03 -0.75 9.75 22.51 0.22 -0.53 16 25 C -0.08 -1.60 5.74 -21.27 -0.12 -1.73 16 26 C 0.29 6.57 15.32 88.34 1.35 7.93 16 27 N -0.47 -13.14 18.53 19.00 0.35 -12.79 16 28 C -0.02 -0.30 9.75 22.51 0.22 -0.09 16 29 C -0.16 -2.35 8.56 22.36 0.19 -2.16 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.03 1.47 7.80 -2.39 -0.02 1.45 16 32 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 33 H 0.08 4.55 5.95 -2.39 -0.01 4.54 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.11 0.83 5.90 -2.39 -0.01 0.81 16 42 H 0.11 3.28 5.53 -2.91 -0.02 3.27 16 43 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 44 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.17 1.49 6.74 -2.91 -0.02 1.47 16 Total: -1.00 -72.28 369.61 5.66 -66.62 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.02 Total: 15.90 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.19 Total: -7.33 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.36 Total: -78.66 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.21 Total: -41.01 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.28 5.66 -66.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.198 kcal (2) G-P(sol) polarization free energy of solvation -72.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds