Wall clock time and date at job start Tue Mar 31 2020 15:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46578 * 2 1 4 4 H 1.08996 * 109.47306 * 54.99582 * 3 2 1 5 5 C 1.50705 * 109.46725 * 175.00031 * 3 2 1 6 6 H 1.07997 * 119.99643 * 119.99619 * 5 3 2 7 7 C 1.37875 * 120.00067 * 299.99207 * 5 3 2 8 8 N 1.31516 * 119.99785 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99939 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47194 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46790 * 120.00336 * 9 7 5 12 12 H 1.48499 * 109.47108 * 240.00165 * 9 7 5 13 13 O 1.45205 * 109.46944 * 294.99557 * 3 2 1 14 14 C 1.34897 * 117.00096 * 90.00355 * 13 3 2 15 15 O 1.21631 * 120.00058 * 0.02562 * 14 13 3 16 16 C 1.46464 * 120.00186 * 180.02562 * 14 13 3 17 17 N 1.38318 * 126.83135 * 0.02562 * 16 14 13 18 18 H 0.97001 * 126.56113 * 0.02562 * 17 16 14 19 19 C 1.35890 * 106.88202 * 179.74013 * 17 16 14 20 20 C 1.47814 * 125.49328 * 180.22740 * 19 17 16 21 21 C 1.39609 * 120.14775 * 359.97438 * 20 19 17 22 22 C 1.37934 * 119.85073 * 179.97438 * 21 20 19 23 23 C 1.38390 * 120.14651 * 359.97438 * 22 21 20 24 24 C 1.38340 * 120.29392 * 0.02562 * 23 22 21 25 25 C 1.50703 * 119.92325 * 180.02562 * 24 23 22 26 26 C 1.37968 * 120.14528 * 359.75823 * 24 23 22 27 27 N 1.31821 * 109.00806 * 0.26350 * 19 17 16 28 28 C 1.32929 * 109.79226 * 359.97438 * 27 19 17 29 29 C 1.50697 * 126.00950 * 180.02562 * 28 27 19 30 30 H 1.09004 * 109.46490 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47284 * 300.00411 * 1 2 3 32 32 H 1.09002 * 109.47161 * 60.00383 * 1 2 3 33 33 H 1.08996 * 109.47623 * 239.99910 * 2 1 3 34 34 H 1.08998 * 109.46969 * 119.98877 * 2 1 3 35 35 H 0.96994 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.07702 * 0.02844 * 21 20 19 37 37 H 1.08003 * 119.92550 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.84821 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47130 * 89.99296 * 25 24 23 40 40 H 1.08993 * 109.46619 * 209.99486 * 25 24 23 41 41 H 1.08998 * 109.46838 * 329.99478 * 25 24 23 42 42 H 1.08008 * 120.07372 * 180.27717 * 26 24 23 43 43 H 1.08995 * 109.46975 * 89.97601 * 29 28 27 44 44 H 1.08998 * 109.47154 * 209.98062 * 29 28 27 45 45 H 1.09007 * 109.46874 * 329.97867 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8787 1.2280 8 7 3.4062 0.3370 2.1730 9 14 6.0049 0.8816 1.3818 10 1 6.5987 1.5476 0.1947 11 1 6.3989 1.6172 2.6102 12 1 6.4971 -0.5171 1.4631 13 8 1.6558 2.0917 -1.2408 14 6 0.4667 2.7285 -1.2562 15 8 -0.2295 2.7410 -0.2590 16 6 0.0140 3.4050 -2.4738 17 7 0.6868 3.4793 -3.6801 18 1 1.5524 3.0918 -3.8837 19 6 -0.0997 4.1936 -4.5273 20 6 0.2245 4.5163 -5.9329 21 6 1.4257 4.0783 -6.4937 22 6 1.7218 4.3824 -7.8061 23 6 0.8311 5.1195 -8.5667 24 6 -0.3608 5.5565 -8.0171 25 6 -1.3249 6.3582 -8.8532 26 6 -0.6713 5.2554 -6.7070 27 7 -1.1981 4.5530 -3.8932 28 6 -1.1668 4.0973 -2.6449 29 6 -2.2360 4.2968 -1.6018 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8293 -0.0613 2.9496 36 1 2.1210 3.5019 -5.9016 37 1 2.6509 4.0445 -8.2410 38 1 1.0677 5.3545 -9.5939 39 1 -2.0157 5.6833 -9.3586 40 1 -1.8852 7.0373 -8.2107 41 1 -0.7710 6.9336 -9.5949 42 1 -1.6042 5.5934 -6.2804 43 1 -2.9532 3.4779 -1.6556 44 1 -1.7792 4.3154 -0.6123 45 1 -2.7487 5.2415 -1.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:38 Heat of formation + Delta-G solvation = -28.825071 kcal Electronic energy + Delta-G solvation = -27224.821283 eV Core-core repulsion = 23400.311041 eV Total energy + Delta-G solvation = -3824.510242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09637 -39.54627 -39.18109 -35.89574 -33.80723 -33.56109 -32.82203 -32.21182 -31.40365 -30.10592 -27.77763 -27.25262 -26.69272 -24.30778 -23.27237 -22.42936 -21.67490 -20.58558 -19.91587 -19.38937 -18.29882 -16.90986 -16.69102 -16.13924 -15.82010 -15.57963 -15.34203 -14.96378 -14.81703 -14.51388 -14.01569 -13.91792 -13.39348 -13.11750 -12.96090 -12.88069 -12.79494 -12.51663 -12.33418 -12.14898 -12.09941 -11.62110 -11.55063 -11.44181 -11.33282 -11.24142 -11.03645 -10.73331 -10.39631 -10.34341 -10.09153 -9.86043 -9.72003 -9.51602 -9.45833 -9.01658 -8.88966 -8.53316 -7.99286 -6.25611 -4.33232 0.54196 1.10485 1.57825 2.76797 2.81041 3.18251 3.25113 3.29049 3.49445 3.56260 3.63222 4.00495 4.27836 4.46988 4.56606 4.81394 4.86499 5.00912 5.03921 5.06613 5.13165 5.31972 5.36108 5.47730 5.56009 5.71473 5.79459 5.84999 5.90399 5.98724 6.11348 6.16783 6.18684 6.22916 6.25426 6.29306 6.39597 6.62920 6.65107 6.80526 6.89652 7.10066 7.13535 7.19600 7.53326 7.65583 7.82802 7.84886 8.06827 8.50575 8.78065 9.32143 10.81137 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.002897 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.108938 B = 9661.859484 C =11039.994583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.911 3.089 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.359 6.359 14 C 0.530 3.470 15 O -0.495 6.495 16 C -0.050 4.050 17 N -0.532 5.532 18 H 0.431 0.569 19 C 0.268 3.732 20 C -0.012 4.012 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.114 4.114 26 C -0.075 4.075 27 N -0.478 5.478 28 C 0.096 3.904 29 C -0.076 4.076 30 H 0.034 0.966 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.110 0.890 35 H 0.267 0.733 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 8.428 -19.250 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.738 3.262 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.276 6.276 14 C 0.373 3.627 15 O -0.384 6.384 16 C -0.166 4.166 17 N -0.136 5.136 18 H 0.271 0.729 19 C 0.009 3.991 20 C -0.014 4.014 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.171 4.171 26 C -0.095 4.095 27 N -0.198 5.198 28 C -0.040 4.040 29 C -0.134 4.134 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.776 8.731 -18.996 22.306 hybrid contribution 2.172 -0.916 0.498 2.409 sum -5.604 7.815 -18.499 20.849 Atomic orbital electron populations 1.21867 0.98225 0.99152 1.00836 1.22030 0.92767 0.99192 1.03385 1.20747 0.95079 0.88764 0.78213 0.93204 1.21037 0.89512 1.39201 1.06346 0.91421 1.24880 0.99285 0.94688 0.95023 1.69890 1.35345 1.37617 1.09450 0.86230 0.83794 0.77924 0.78257 1.19555 1.20671 1.20654 1.86555 1.33498 1.62704 1.44805 1.19350 0.81272 0.76696 0.85386 1.90834 1.55598 1.58513 1.33485 1.20652 0.97252 1.11877 0.86804 1.43344 1.19286 1.40988 1.10004 0.72896 1.21233 0.88648 0.97176 0.92087 1.17597 0.95556 1.00414 0.87791 1.21133 0.95822 1.00278 0.96060 1.21001 0.99765 0.98597 0.93609 1.21181 0.93827 0.98129 0.99906 1.19884 0.95826 0.98801 0.94255 1.20800 0.97996 0.99099 0.99187 1.21097 0.99217 0.96458 0.92733 1.70137 1.19917 1.24286 1.05476 1.21294 0.94013 0.95971 0.92717 1.20310 0.94987 1.02212 0.95863 0.94729 0.92609 0.94989 0.94076 0.87189 0.92330 0.86002 0.85356 0.85754 0.90978 0.91190 0.91442 0.84378 0.90605 0.88994 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.56 37.16 0.32 -2.79 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.45 16 3 C 0.22 5.81 2.25 -27.88 -0.06 5.74 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.27 8.90 -34.44 -0.31 -14.57 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.50 11.29 55.43 0.63 -23.87 16 9 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.36 -8.31 9.82 -41.03 -0.40 -8.71 16 14 C 0.53 11.20 6.38 34.04 0.22 11.42 16 15 O -0.50 -11.14 12.04 -19.37 -0.23 -11.37 16 16 C -0.05 -0.90 7.16 -81.73 -0.59 -1.49 16 17 N -0.53 -8.05 6.11 -7.15 -0.04 -8.09 16 18 H 0.43 5.63 8.04 -40.82 -0.33 5.30 16 19 C 0.27 3.90 7.74 -154.89 -1.20 2.70 16 20 C -0.01 -0.14 5.87 -104.97 -0.62 -0.76 16 21 C -0.11 -1.14 9.69 -39.18 -0.38 -1.52 16 22 C -0.11 -0.94 10.03 -39.64 -0.40 -1.34 16 23 C -0.11 -0.89 9.69 -39.49 -0.38 -1.27 16 24 C -0.09 -0.76 5.87 -104.68 -0.61 -1.38 16 25 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 26 C -0.08 -0.81 9.33 -39.18 -0.37 -1.17 16 27 N -0.48 -7.61 10.79 -7.01 -0.08 -7.68 16 28 C 0.10 1.61 7.17 -82.23 -0.59 1.02 16 29 C -0.08 -1.10 9.88 36.00 0.36 -0.74 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 32 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 2.90 5.95 -51.93 -0.31 2.60 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.12 1.08 7.14 -52.49 -0.37 0.70 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.14 1.48 7.82 -52.48 -0.41 1.07 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.44 6.52 -51.93 -0.34 1.10 16 45 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -30.63 375.84 -10.17 -40.80 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.20 Total: 5.98 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -4.49 Total: -8.33 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.51 Total: -39.65 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.64 Total: -20.08 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.63 -10.17 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.973 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds