Wall clock time and date at job start Tue Mar 31 2020 15:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46578 * 2 1 4 4 H 1.08996 * 109.47306 * 54.99582 * 3 2 1 5 5 C 1.50705 * 109.46725 * 175.00031 * 3 2 1 6 6 H 1.07997 * 119.99643 * 119.99619 * 5 3 2 7 7 C 1.37875 * 120.00067 * 299.99207 * 5 3 2 8 8 N 1.31516 * 119.99785 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99939 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47194 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46790 * 120.00336 * 9 7 5 12 12 H 1.48499 * 109.47108 * 240.00165 * 9 7 5 13 13 O 1.45205 * 109.46944 * 294.99557 * 3 2 1 14 14 C 1.34897 * 117.00096 * 90.00355 * 13 3 2 15 15 O 1.21631 * 120.00058 * 0.02562 * 14 13 3 16 16 C 1.46464 * 120.00186 * 180.02562 * 14 13 3 17 17 N 1.38318 * 126.83135 * 0.02562 * 16 14 13 18 18 H 0.97001 * 126.56113 * 0.02562 * 17 16 14 19 19 C 1.35890 * 106.88202 * 179.74013 * 17 16 14 20 20 C 1.47814 * 125.49328 * 180.22740 * 19 17 16 21 21 C 1.39609 * 120.14775 * 359.97438 * 20 19 17 22 22 C 1.37934 * 119.85073 * 179.97438 * 21 20 19 23 23 C 1.38390 * 120.14651 * 359.97438 * 22 21 20 24 24 C 1.38340 * 120.29392 * 0.02562 * 23 22 21 25 25 C 1.50703 * 119.92325 * 180.02562 * 24 23 22 26 26 C 1.37968 * 120.14528 * 359.75823 * 24 23 22 27 27 N 1.31821 * 109.00806 * 0.26350 * 19 17 16 28 28 C 1.32929 * 109.79226 * 359.97438 * 27 19 17 29 29 C 1.50697 * 126.00950 * 180.02562 * 28 27 19 30 30 H 1.09004 * 109.46490 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47284 * 300.00411 * 1 2 3 32 32 H 1.09002 * 109.47161 * 60.00383 * 1 2 3 33 33 H 1.08996 * 109.47623 * 239.99910 * 2 1 3 34 34 H 1.08998 * 109.46969 * 119.98877 * 2 1 3 35 35 H 0.96994 * 119.99834 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.07702 * 0.02844 * 21 20 19 37 37 H 1.08003 * 119.92550 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.84821 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.47130 * 89.99296 * 25 24 23 40 40 H 1.08993 * 109.46619 * 209.99486 * 25 24 23 41 41 H 1.08998 * 109.46838 * 329.99478 * 25 24 23 42 42 H 1.08008 * 120.07372 * 180.27717 * 26 24 23 43 43 H 1.08995 * 109.46975 * 89.97601 * 29 28 27 44 44 H 1.08998 * 109.47154 * 209.98062 * 29 28 27 45 45 H 1.09007 * 109.46874 * 329.97867 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8787 1.2280 8 7 3.4062 0.3370 2.1730 9 14 6.0049 0.8816 1.3818 10 1 6.5987 1.5476 0.1947 11 1 6.3989 1.6172 2.6102 12 1 6.4971 -0.5171 1.4631 13 8 1.6558 2.0917 -1.2408 14 6 0.4667 2.7285 -1.2562 15 8 -0.2295 2.7410 -0.2590 16 6 0.0140 3.4050 -2.4738 17 7 0.6868 3.4793 -3.6801 18 1 1.5524 3.0918 -3.8837 19 6 -0.0997 4.1936 -4.5273 20 6 0.2245 4.5163 -5.9329 21 6 1.4257 4.0783 -6.4937 22 6 1.7218 4.3824 -7.8061 23 6 0.8311 5.1195 -8.5667 24 6 -0.3608 5.5565 -8.0171 25 6 -1.3249 6.3582 -8.8532 26 6 -0.6713 5.2554 -6.7070 27 7 -1.1981 4.5530 -3.8932 28 6 -1.1668 4.0973 -2.6449 29 6 -2.2360 4.2968 -1.6018 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.8293 -0.0613 2.9496 36 1 2.1210 3.5019 -5.9016 37 1 2.6509 4.0445 -8.2410 38 1 1.0677 5.3545 -9.5939 39 1 -2.0157 5.6833 -9.3586 40 1 -1.8852 7.0373 -8.2107 41 1 -0.7710 6.9336 -9.5949 42 1 -1.6042 5.5934 -6.2804 43 1 -2.9532 3.4779 -1.6556 44 1 -1.7792 4.3154 -0.6123 45 1 -2.7487 5.2415 -1.7831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:38 Heat of formation + Delta-G solvation = -43.823723 kcal Electronic energy + Delta-G solvation = -27225.471674 eV Core-core repulsion = 23400.311041 eV Total energy + Delta-G solvation = -3825.160632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.34258 -41.12601 -40.08154 -37.69570 -35.60029 -34.72830 -33.88879 -33.36592 -33.03536 -31.16565 -29.51929 -28.44516 -27.62401 -25.67404 -24.94020 -23.53293 -22.88717 -21.74662 -21.53543 -20.74683 -19.73673 -18.68105 -18.11269 -17.41403 -17.33049 -16.86299 -16.50365 -16.26735 -16.19600 -15.87868 -14.96982 -14.81273 -14.72029 -14.61391 -14.10016 -14.04517 -14.02327 -13.88007 -13.45321 -13.36992 -13.31126 -13.11054 -12.99578 -12.96573 -12.86922 -12.60888 -12.29405 -12.16584 -12.04819 -11.81596 -11.75764 -11.45412 -11.30548 -11.25511 -10.87282 -10.57626 -10.45431 -9.71781 -9.12227 -8.30647 -6.47606 -0.47657 0.36530 0.42380 1.39231 1.40058 1.49621 1.55177 1.66503 1.95779 1.97206 2.38486 2.83411 2.92578 2.99295 3.55728 3.83366 3.86535 3.97209 4.06439 4.17927 4.33702 4.36117 4.36794 4.39708 4.50758 4.56957 4.69378 4.75832 4.79404 4.87021 4.88908 4.91433 4.92489 5.05523 5.06555 5.17540 5.27266 5.30697 5.34934 5.43260 5.46247 5.51064 5.61654 5.62392 5.89798 5.95987 6.03952 6.05842 6.53693 6.60097 6.86565 7.23131 8.76348 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.002897 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.108938 B = 9661.859484 C =11039.994583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.364 6.364 14 C 0.529 3.471 15 O -0.517 6.517 16 C -0.088 4.088 17 N -0.530 5.530 18 H 0.437 0.563 19 C 0.293 3.707 20 C -0.043 4.043 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.102 4.102 24 C -0.091 4.091 25 C -0.114 4.114 26 C -0.084 4.084 27 N -0.495 5.495 28 C 0.105 3.895 29 C -0.075 4.075 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 9.011 -22.281 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.030 0.970 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.804 3.196 10 H -0.189 1.189 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.281 6.281 14 C 0.374 3.626 15 O -0.407 6.407 16 C -0.203 4.203 17 N -0.135 5.135 18 H 0.279 0.721 19 C 0.032 3.968 20 C -0.046 4.046 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.170 4.170 26 C -0.104 4.104 27 N -0.215 5.215 28 C -0.032 4.032 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.094 9.313 -22.036 24.953 hybrid contribution 1.899 -0.986 1.228 2.467 sum -5.195 8.326 -20.808 23.006 Atomic orbital electron populations 1.21716 0.96239 1.00648 1.00144 1.21875 0.94487 0.97952 1.02379 1.20454 0.94621 0.89252 0.78112 0.97020 1.21305 0.90289 1.40141 1.06974 0.91734 1.25775 1.04149 0.93851 0.94341 1.70006 1.37354 1.37728 1.09843 0.85174 0.77765 0.78344 0.78358 1.18880 1.20197 1.19607 1.86529 1.34927 1.63296 1.43339 1.19744 0.80279 0.76190 0.86342 1.90811 1.55872 1.59406 1.34624 1.20261 0.98708 1.14417 0.86878 1.43275 1.19647 1.41322 1.09250 0.72073 1.21854 0.87555 0.94552 0.92789 1.17722 0.97274 1.02930 0.86627 1.21338 0.95216 1.00158 0.97093 1.21359 1.00848 0.98055 0.92806 1.21615 0.92877 0.96374 1.01180 1.20203 0.96704 0.98613 0.93591 1.20861 0.97823 0.99111 0.99214 1.21187 0.98898 0.96558 0.93737 1.70216 1.20811 1.25336 1.05148 1.21703 0.93712 0.94457 0.93349 1.20355 0.94637 1.03831 0.94376 0.92010 0.94047 0.94876 0.93737 0.89268 0.91937 0.85335 0.82764 0.82673 0.90090 0.91200 0.89658 0.85016 0.89485 0.90580 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.56 71.98 0.62 -5.12 16 2 C -0.13 -6.46 5.49 30.60 0.17 -6.30 16 3 C 0.23 12.36 2.25 29.85 0.07 12.43 16 4 H 0.01 0.73 7.16 -2.39 -0.02 0.71 16 5 C -0.55 -30.82 8.90 25.60 0.23 -30.59 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -51.51 11.29 21.45 0.24 -51.27 16 9 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 10 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 11 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.36 -17.58 9.82 -58.12 -0.57 -18.15 16 14 C 0.53 23.38 6.38 69.96 0.45 23.83 16 15 O -0.52 -24.45 12.04 19.41 0.23 -24.21 16 16 C -0.09 -3.27 7.16 40.19 0.29 -2.98 16 17 N -0.53 -16.29 6.11 -176.53 -1.08 -17.37 16 18 H 0.44 11.65 8.04 -92.71 -0.75 10.91 16 19 C 0.29 8.48 7.74 136.59 1.06 9.54 16 20 C -0.04 -1.00 5.87 -20.09 -0.12 -1.12 16 21 C -0.12 -2.20 9.69 22.53 0.22 -1.98 16 22 C -0.11 -1.56 10.03 22.23 0.22 -1.33 16 23 C -0.10 -1.26 9.69 22.33 0.22 -1.04 16 24 C -0.09 -1.35 5.87 -19.90 -0.12 -1.47 16 25 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 26 C -0.08 -1.70 9.33 22.53 0.21 -1.49 16 27 N -0.49 -15.71 10.79 -176.09 -1.90 -17.61 16 28 C 0.10 3.55 7.17 42.32 0.30 3.86 16 29 C -0.07 -2.16 9.88 71.24 0.70 -1.46 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.04 1.91 7.79 -2.39 -0.02 1.89 16 32 H 0.03 1.42 6.06 -2.39 -0.01 1.41 16 33 H 0.04 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 35 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 36 H 0.13 2.12 7.14 -2.91 -0.02 2.10 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 41 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 42 H 0.13 2.75 7.82 -2.91 -0.02 2.73 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.08 2.47 6.52 -2.39 -0.02 2.45 16 45 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -67.99 375.84 4.90 -63.09 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.28 Total: 25.19 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.67 Total: -4.09 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.74 Total: -86.26 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.34 Total: -42.36 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -67.99 4.90 -63.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.267 kcal (2) G-P(sol) polarization free energy of solvation -67.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds