Wall clock time and date at job start Tue Mar 31 2020 15:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46910 * 2 1 4 4 H 1.08998 * 109.47848 * 305.00309 * 3 2 1 5 5 C 1.50704 * 109.47068 * 184.99898 * 3 2 1 6 6 H 1.08003 * 120.00042 * 240.00796 * 5 3 2 7 7 C 1.37871 * 119.99969 * 60.00216 * 5 3 2 8 8 N 1.31521 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47375 * 89.99741 * 9 7 5 11 11 H 1.48502 * 109.47194 * 210.00049 * 9 7 5 12 12 H 1.48505 * 109.47234 * 329.99958 * 9 7 5 13 13 O 1.45205 * 109.47181 * 65.00191 * 3 2 1 14 14 C 1.34897 * 117.00096 * 269.99927 * 13 3 2 15 15 O 1.21631 * 120.00043 * 359.97438 * 14 13 3 16 16 C 1.46464 * 120.00185 * 179.97438 * 14 13 3 17 17 N 1.38318 * 126.83153 * 0.02562 * 16 14 13 18 18 H 0.97001 * 126.56112 * 0.04797 * 17 16 14 19 19 C 1.35890 * 106.88201 * 179.77618 * 17 16 14 20 20 C 1.47813 * 125.49330 * 180.21268 * 19 17 16 21 21 C 1.39608 * 120.14756 * 359.97438 * 20 19 17 22 22 C 1.37934 * 119.85056 * 179.97438 * 21 20 19 23 23 C 1.38390 * 120.14675 * 359.97438 * 22 21 20 24 24 C 1.38340 * 120.29371 * 0.02562 * 23 22 21 25 25 C 1.50704 * 119.92306 * 180.02562 * 24 23 22 26 26 C 1.37971 * 120.14926 * 359.74386 * 24 23 22 27 27 N 1.31820 * 109.00834 * 0.22645 * 19 17 16 28 28 C 1.32929 * 109.79189 * 0.02562 * 27 19 17 29 29 C 1.50696 * 126.00923 * 180.02562 * 28 27 19 30 30 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47417 * 299.99622 * 1 2 3 32 32 H 1.09005 * 109.47325 * 59.99795 * 1 2 3 33 33 H 1.09002 * 109.47015 * 239.99978 * 2 1 3 34 34 H 1.08998 * 109.46949 * 120.00064 * 2 1 3 35 35 H 0.97003 * 119.99710 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.07692 * 0.02562 * 21 20 19 37 37 H 1.07993 * 119.92657 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.84843 * 180.02562 * 23 22 21 39 39 H 1.08996 * 109.47071 * 89.99941 * 25 24 23 40 40 H 1.09000 * 109.46525 * 210.00004 * 25 24 23 41 41 H 1.08996 * 109.46952 * 329.99563 * 25 24 23 42 42 H 1.07998 * 120.07876 * 180.28464 * 26 24 23 43 43 H 1.09004 * 109.47281 * 90.01966 * 29 28 27 44 44 H 1.08994 * 109.47473 * 210.02401 * 29 28 27 45 45 H 1.09002 * 109.47017 * 330.01937 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8801 -1.3811 10 1 6.5538 -0.3519 -0.7598 11 1 6.3835 0.9216 -2.8164 12 1 6.5575 2.0720 -0.6888 13 8 1.6558 2.0916 1.2408 14 6 0.4667 2.7285 1.2561 15 8 -0.2295 2.7409 0.2589 16 6 0.0141 3.4051 2.4737 17 7 0.6873 3.4803 3.6797 18 1 1.5537 3.0943 3.8828 19 6 -0.0945 4.2036 4.5236 20 6 0.2360 4.5381 5.9250 21 6 1.4381 4.1019 6.4851 22 6 1.7405 4.4180 7.7933 23 6 0.8557 5.1662 8.5499 24 6 -0.3371 5.6015 8.0009 25 6 -1.2943 6.4163 8.8322 26 6 -0.6498 5.2964 6.6922 27 7 -1.1953 4.5585 3.8911 28 6 -1.1701 4.0911 2.6470 29 6 -2.2432 4.2831 1.6065 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0611 -2.9498 36 1 2.1300 3.5190 5.8954 37 1 2.6702 4.0816 8.2277 38 1 1.0976 5.4113 9.5735 39 1 -1.0648 7.4756 8.7169 40 1 -2.3152 6.2274 8.5004 41 1 -1.1951 6.1350 9.8806 42 1 -1.5793 5.6407 6.2633 43 1 -2.0418 5.1926 1.0404 44 1 -2.2507 3.4283 0.9303 45 1 -3.2133 4.3673 2.0964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:45 Heat of formation + Delta-G solvation = -28.802301 kcal Electronic energy + Delta-G solvation = -27225.066117 eV Core-core repulsion = 23400.556862 eV Total energy + Delta-G solvation = -3824.509254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.09640 -39.54609 -39.18088 -35.89508 -33.80775 -33.56051 -32.82178 -32.21175 -31.40407 -30.10699 -27.77473 -27.25272 -26.69407 -24.30768 -23.27228 -22.42865 -21.67540 -20.58547 -19.91674 -19.38890 -18.29880 -16.90920 -16.69055 -16.13749 -15.82165 -15.57391 -15.34439 -14.95839 -14.81725 -14.52049 -14.01665 -13.91981 -13.39511 -13.10928 -12.95917 -12.87733 -12.80856 -12.51797 -12.32289 -12.17987 -12.07291 -11.61240 -11.55404 -11.43589 -11.33249 -11.25756 -11.03697 -10.72669 -10.39802 -10.34887 -10.09082 -9.87249 -9.70847 -9.50867 -9.46473 -9.01644 -8.90052 -8.52808 -7.99300 -6.25359 -4.33122 0.54197 1.10478 1.57849 2.76752 2.81118 3.19237 3.24984 3.28074 3.49481 3.56195 3.63223 4.00503 4.27903 4.46984 4.56615 4.81395 4.86485 5.00886 5.03900 5.06724 5.13158 5.32066 5.36085 5.47724 5.56025 5.71477 5.79452 5.85210 5.90528 5.98673 6.11286 6.16593 6.18485 6.22904 6.25207 6.29291 6.39482 6.62852 6.65109 6.80611 6.89440 7.09950 7.13441 7.19592 7.53173 7.65653 7.82788 7.84888 8.06886 8.50596 8.77830 9.32193 10.81296 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.002899 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.890777 B = 9655.670661 C =11041.170957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.886 5.886 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.272 1.272 13 O -0.359 6.359 14 C 0.530 3.470 15 O -0.495 6.495 16 C -0.050 4.050 17 N -0.532 5.532 18 H 0.431 0.569 19 C 0.268 3.732 20 C -0.012 4.012 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.088 4.088 25 C -0.114 4.114 26 C -0.075 4.075 27 N -0.478 5.478 28 C 0.096 3.904 29 C -0.076 4.076 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.267 0.733 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.138 0.862 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.971 8.483 19.215 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.562 4.562 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.523 5.523 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.197 1.197 13 O -0.276 6.276 14 C 0.373 3.627 15 O -0.384 6.384 16 C -0.166 4.166 17 N -0.136 5.136 18 H 0.271 0.729 19 C 0.009 3.991 20 C -0.014 4.014 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.171 4.171 26 C -0.095 4.095 27 N -0.198 5.198 28 C -0.040 4.040 29 C -0.134 4.134 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.156 0.844 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.748 8.782 18.957 22.283 hybrid contribution 2.200 -0.875 -0.498 2.420 sum -5.548 7.907 18.459 20.834 Atomic orbital electron populations 1.21866 0.98237 0.99164 1.00821 1.22030 0.92763 0.99197 1.03392 1.20739 0.95058 0.88753 0.78215 0.93200 1.20998 0.89513 1.39296 1.06362 0.91474 1.24876 0.99279 0.94687 0.95010 1.69885 1.35426 1.37551 1.09444 0.86280 0.83794 0.78645 0.77461 1.20337 1.20867 1.19675 1.86554 1.33463 1.62726 1.44824 1.19349 0.81299 0.76652 0.85405 1.90834 1.55383 1.58849 1.33366 1.20652 0.97205 1.11932 0.86795 1.43344 1.19392 1.40800 1.10088 0.72897 1.21233 0.88815 0.96912 0.92184 1.17599 0.95568 1.00286 0.87908 1.21132 0.95718 1.00371 0.96070 1.20999 0.99777 0.98546 0.93650 1.21180 0.93766 0.98060 1.00035 1.19885 0.95842 0.98773 0.94266 1.20800 0.98113 0.99232 0.98937 1.21098 0.99420 0.96270 0.92714 1.70137 1.19889 1.24094 1.05695 1.21293 0.93959 0.95968 0.92776 1.20309 0.94225 1.03951 0.94884 0.94718 0.94999 0.92609 0.87184 0.94076 0.92276 0.86003 0.85358 0.85753 0.90971 0.91194 0.91445 0.84377 0.90560 0.89023 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.56 37.16 0.32 -2.78 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.45 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 6 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.50 11.29 55.43 0.63 -23.88 16 9 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.36 -8.32 9.82 -41.03 -0.40 -8.72 16 14 C 0.53 11.20 6.38 34.04 0.22 11.42 16 15 O -0.50 -11.14 12.05 -19.37 -0.23 -11.37 16 16 C -0.05 -0.90 7.16 -81.73 -0.59 -1.49 16 17 N -0.53 -8.05 6.11 -7.15 -0.04 -8.09 16 18 H 0.43 5.63 8.04 -40.82 -0.33 5.30 16 19 C 0.27 3.90 7.74 -154.89 -1.20 2.70 16 20 C -0.01 -0.14 5.87 -104.97 -0.62 -0.76 16 21 C -0.11 -1.14 9.69 -39.18 -0.38 -1.52 16 22 C -0.11 -0.94 10.03 -39.64 -0.40 -1.34 16 23 C -0.11 -0.89 9.69 -39.49 -0.38 -1.27 16 24 C -0.09 -0.76 5.87 -104.68 -0.61 -1.38 16 25 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 26 C -0.08 -0.81 9.34 -39.18 -0.37 -1.17 16 27 N -0.48 -7.61 10.79 -7.01 -0.08 -7.68 16 28 C 0.10 1.61 7.17 -82.23 -0.59 1.02 16 29 C -0.08 -1.10 9.88 36.00 0.36 -0.74 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 32 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 33 H 0.11 2.90 5.95 -51.93 -0.31 2.60 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.12 1.08 7.14 -52.49 -0.37 0.70 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 41 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 42 H 0.14 1.48 7.82 -52.49 -0.41 1.07 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.09 1.43 6.52 -51.93 -0.34 1.09 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -30.62 375.85 -10.17 -40.79 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.20 Total: 5.99 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -4.49 Total: -8.33 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.51 Total: -39.66 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.64 Total: -20.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.62 -10.17 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.988 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds