Wall clock time and date at job start Tue Mar 31 2020 15:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.46910 * 2 1 4 4 H 1.08998 * 109.47848 * 305.00309 * 3 2 1 5 5 C 1.50704 * 109.47068 * 184.99898 * 3 2 1 6 6 H 1.08003 * 120.00042 * 240.00796 * 5 3 2 7 7 C 1.37871 * 119.99969 * 60.00216 * 5 3 2 8 8 N 1.31521 * 120.00016 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00181 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47375 * 89.99741 * 9 7 5 11 11 H 1.48502 * 109.47194 * 210.00049 * 9 7 5 12 12 H 1.48505 * 109.47234 * 329.99958 * 9 7 5 13 13 O 1.45205 * 109.47181 * 65.00191 * 3 2 1 14 14 C 1.34897 * 117.00096 * 269.99927 * 13 3 2 15 15 O 1.21631 * 120.00043 * 359.97438 * 14 13 3 16 16 C 1.46464 * 120.00185 * 179.97438 * 14 13 3 17 17 N 1.38318 * 126.83153 * 0.02562 * 16 14 13 18 18 H 0.97001 * 126.56112 * 0.04797 * 17 16 14 19 19 C 1.35890 * 106.88201 * 179.77618 * 17 16 14 20 20 C 1.47813 * 125.49330 * 180.21268 * 19 17 16 21 21 C 1.39608 * 120.14756 * 359.97438 * 20 19 17 22 22 C 1.37934 * 119.85056 * 179.97438 * 21 20 19 23 23 C 1.38390 * 120.14675 * 359.97438 * 22 21 20 24 24 C 1.38340 * 120.29371 * 0.02562 * 23 22 21 25 25 C 1.50704 * 119.92306 * 180.02562 * 24 23 22 26 26 C 1.37971 * 120.14926 * 359.74386 * 24 23 22 27 27 N 1.31820 * 109.00834 * 0.22645 * 19 17 16 28 28 C 1.32929 * 109.79189 * 0.02562 * 27 19 17 29 29 C 1.50696 * 126.00923 * 180.02562 * 28 27 19 30 30 H 1.09004 * 109.47252 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47417 * 299.99622 * 1 2 3 32 32 H 1.09005 * 109.47325 * 59.99795 * 1 2 3 33 33 H 1.09002 * 109.47015 * 239.99978 * 2 1 3 34 34 H 1.08998 * 109.46949 * 120.00064 * 2 1 3 35 35 H 0.97003 * 119.99710 * 179.97438 * 8 7 5 36 36 H 1.07995 * 120.07692 * 0.02562 * 21 20 19 37 37 H 1.07993 * 119.92657 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.84843 * 180.02562 * 23 22 21 39 39 H 1.08996 * 109.47071 * 89.99941 * 25 24 23 40 40 H 1.09000 * 109.46525 * 210.00004 * 25 24 23 41 41 H 1.08996 * 109.46952 * 329.99563 * 25 24 23 42 42 H 1.07998 * 120.07876 * 180.28464 * 26 24 23 43 43 H 1.09004 * 109.47281 * 90.01966 * 29 28 27 44 44 H 1.08994 * 109.47473 * 210.02401 * 29 28 27 45 45 H 1.09002 * 109.47017 * 330.01937 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8801 -1.3811 10 1 6.5538 -0.3519 -0.7598 11 1 6.3835 0.9216 -2.8164 12 1 6.5575 2.0720 -0.6888 13 8 1.6558 2.0916 1.2408 14 6 0.4667 2.7285 1.2561 15 8 -0.2295 2.7409 0.2589 16 6 0.0141 3.4051 2.4737 17 7 0.6873 3.4803 3.6797 18 1 1.5537 3.0943 3.8828 19 6 -0.0945 4.2036 4.5236 20 6 0.2360 4.5381 5.9250 21 6 1.4381 4.1019 6.4851 22 6 1.7405 4.4180 7.7933 23 6 0.8557 5.1662 8.5499 24 6 -0.3371 5.6015 8.0009 25 6 -1.2943 6.4163 8.8322 26 6 -0.6498 5.2964 6.6922 27 7 -1.1953 4.5585 3.8911 28 6 -1.1701 4.0911 2.6470 29 6 -2.2432 4.2831 1.6065 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8293 -0.0611 -2.9498 36 1 2.1300 3.5190 5.8954 37 1 2.6702 4.0816 8.2277 38 1 1.0976 5.4113 9.5735 39 1 -1.0648 7.4756 8.7169 40 1 -2.3152 6.2274 8.5004 41 1 -1.1951 6.1350 9.8806 42 1 -1.5793 5.6407 6.2633 43 1 -2.0418 5.1926 1.0404 44 1 -2.2507 3.4283 0.9303 45 1 -3.2133 4.3673 2.0964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:43 Heat of formation + Delta-G solvation = -43.793165 kcal Electronic energy + Delta-G solvation = -27225.716169 eV Core-core repulsion = 23400.556862 eV Total energy + Delta-G solvation = -3825.159307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.34293 -41.12647 -40.08122 -37.69552 -35.60025 -34.72837 -33.88886 -33.36509 -33.03664 -31.16668 -29.51613 -28.44635 -27.62415 -25.67452 -24.93917 -23.53230 -22.88843 -21.74662 -21.53554 -20.74724 -19.73684 -18.67954 -18.11164 -17.39800 -17.34512 -16.86191 -16.49929 -16.27232 -16.19843 -15.87930 -14.97654 -14.80486 -14.71241 -14.62181 -14.10224 -14.05847 -14.02158 -13.87001 -13.45099 -13.35977 -13.28153 -13.15650 -12.99743 -12.96619 -12.86093 -12.59571 -12.29296 -12.17867 -12.04885 -11.81756 -11.76070 -11.44852 -11.30404 -11.25527 -10.88561 -10.56720 -10.45692 -9.71787 -9.12253 -8.30422 -6.47542 -0.47677 0.36520 0.42355 1.39142 1.41320 1.49175 1.54427 1.66530 1.95852 1.97013 2.38574 2.83400 2.92566 2.99418 3.55726 3.83349 3.86519 3.97224 4.06494 4.17926 4.33648 4.36086 4.36734 4.39700 4.50652 4.56934 4.69382 4.75595 4.79399 4.87143 4.88887 4.91456 4.92605 5.05438 5.06544 5.17458 5.27188 5.30687 5.34935 5.43236 5.46049 5.51060 5.61649 5.62394 5.89768 5.95985 6.03958 6.05846 6.53562 6.60018 6.86490 7.23153 8.76303 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.002899 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.890777 B = 9655.670661 C =11041.170957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.229 3.771 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.267 1.267 13 O -0.364 6.364 14 C 0.529 3.471 15 O -0.517 6.517 16 C -0.088 4.088 17 N -0.530 5.530 18 H 0.437 0.563 19 C 0.293 3.707 20 C -0.044 4.044 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.102 4.102 24 C -0.091 4.091 25 C -0.114 4.114 26 C -0.084 4.084 27 N -0.495 5.495 28 C 0.105 3.895 29 C -0.075 4.075 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.271 0.729 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 9.128 22.230 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.030 0.970 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.192 1.192 13 O -0.281 6.281 14 C 0.374 3.626 15 O -0.407 6.407 16 C -0.203 4.203 17 N -0.135 5.135 18 H 0.279 0.721 19 C 0.032 3.968 20 C -0.046 4.046 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.091 4.091 25 C -0.170 4.170 26 C -0.104 4.104 27 N -0.215 5.215 28 C -0.032 4.032 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.023 9.424 21.982 24.926 hybrid contribution 1.915 -0.963 -1.222 2.467 sum -5.108 8.461 20.759 22.992 Atomic orbital electron populations 1.21716 0.96239 1.00661 1.00140 1.21875 0.94492 0.97956 1.02381 1.20446 0.94606 0.89241 0.78111 0.97024 1.21277 0.90301 1.40234 1.07010 0.91720 1.25773 1.04151 0.93845 0.94325 1.70005 1.37415 1.37670 1.09824 0.85223 0.77755 0.79042 0.77639 1.19184 1.20273 1.19168 1.86528 1.34886 1.63317 1.43359 1.19744 0.80303 0.76140 0.86370 1.90811 1.55650 1.59746 1.34511 1.20262 0.98617 1.14511 0.86873 1.43274 1.19754 1.41132 1.09333 0.72072 1.21854 0.87726 0.94308 0.92862 1.17724 0.97292 1.02766 0.86776 1.21338 0.95104 1.00265 0.97093 1.21358 1.00853 0.98013 0.92844 1.21615 0.92825 0.96316 1.01289 1.20204 0.96714 0.98605 0.93590 1.20861 0.97448 0.99256 0.99445 1.21188 0.99112 0.96368 0.93709 1.70215 1.20783 1.25151 1.05361 1.21702 0.93646 0.94489 0.93386 1.20357 0.94806 1.03638 0.94414 0.92001 0.94883 0.94036 0.89257 0.93750 0.91933 0.85330 0.82764 0.82672 0.90131 0.91180 0.89638 0.85017 0.89675 0.90448 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.56 71.98 0.62 -5.12 16 2 C -0.13 -6.47 5.49 30.59 0.17 -6.30 16 3 C 0.23 12.39 2.25 29.85 0.07 12.45 16 4 H 0.01 0.73 7.16 -2.39 -0.02 0.71 16 5 C -0.55 -30.89 8.90 25.60 0.23 -30.66 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 O -0.36 -17.58 9.82 -58.12 -0.57 -18.15 16 14 C 0.53 23.39 6.38 69.96 0.45 23.84 16 15 O -0.52 -24.45 12.05 19.41 0.23 -24.22 16 16 C -0.09 -3.27 7.16 40.19 0.29 -2.98 16 17 N -0.53 -16.29 6.11 -176.53 -1.08 -17.37 16 18 H 0.44 11.65 8.04 -92.71 -0.75 10.90 16 19 C 0.29 8.48 7.74 136.59 1.06 9.54 16 20 C -0.04 -1.00 5.87 -20.09 -0.12 -1.12 16 21 C -0.12 -2.20 9.69 22.53 0.22 -1.98 16 22 C -0.11 -1.56 10.03 22.23 0.22 -1.33 16 23 C -0.10 -1.26 9.69 22.33 0.22 -1.04 16 24 C -0.09 -1.35 5.87 -19.90 -0.12 -1.47 16 25 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 26 C -0.08 -1.70 9.34 22.53 0.21 -1.49 16 27 N -0.49 -15.72 10.79 -176.10 -1.90 -17.62 16 28 C 0.10 3.55 7.17 42.32 0.30 3.86 16 29 C -0.07 -2.17 9.88 71.23 0.70 -1.46 16 30 H 0.06 2.34 8.14 -2.38 -0.02 2.33 16 31 H 0.03 1.42 6.06 -2.39 -0.01 1.40 16 32 H 0.04 1.92 7.79 -2.38 -0.02 1.90 16 33 H 0.09 4.87 5.95 -2.39 -0.01 4.86 16 34 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.13 2.12 7.14 -2.91 -0.02 2.10 16 37 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.66 8.08 -2.39 -0.02 0.65 16 41 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 42 H 0.13 2.75 7.82 -2.91 -0.02 2.73 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.08 2.49 6.52 -2.39 -0.02 2.47 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -67.97 375.85 4.90 -63.07 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.28 Total: 25.29 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.67 Total: -4.12 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.74 Total: -86.28 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.34 Total: -42.37 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.97 4.90 -63.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.274 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds