Wall clock time and date at job start Tue Mar 31 2020 15:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46567 * 2 1 4 4 H 1.09001 * 109.46967 * 55.00825 * 3 2 1 5 5 C 1.50705 * 109.46547 * 175.00013 * 3 2 1 6 6 H 1.07996 * 119.99566 * 120.00688 * 5 3 2 7 7 C 1.37875 * 120.00037 * 299.99873 * 5 3 2 8 8 N 1.31509 * 120.00197 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99742 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47230 * 60.00518 * 9 7 5 11 11 H 1.48506 * 109.46875 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47391 * 300.00282 * 9 7 5 13 13 O 1.45197 * 109.47407 * 294.99997 * 3 2 1 14 14 C 1.34761 * 116.99557 * 90.00092 * 13 3 2 15 15 O 1.21523 * 120.00485 * 0.02562 * 14 13 3 16 16 C 1.47274 * 119.99573 * 179.97438 * 14 13 3 17 17 C 1.41381 * 126.42124 * 359.69293 * 16 14 13 18 18 N 1.30459 * 108.05582 * 179.81137 * 17 16 14 19 19 N 1.39926 * 108.93825 * 0.44819 * 18 17 16 20 20 C 1.40155 * 125.76467 * 179.68792 * 19 18 17 21 21 C 1.38846 * 120.06316 * 42.05017 * 20 19 18 22 22 C 1.38115 * 119.92695 * 179.69896 * 21 20 19 23 23 C 1.38284 * 120.06834 * 0.60031 * 22 21 20 24 24 C 1.50703 * 119.93066 * 179.70242 * 23 22 21 25 25 C 1.38280 * 120.13518 * 359.67416 * 23 22 21 26 26 C 1.38110 * 120.06777 * 0.02562 * 25 23 22 27 27 C 1.34503 * 108.47551 * 359.71166 * 19 18 17 28 28 C 1.50701 * 126.31322 * 180.02562 * 27 19 18 29 29 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47242 * 59.99894 * 1 2 3 31 31 H 1.09003 * 109.47501 * 299.99812 * 1 2 3 32 32 H 1.09001 * 109.47242 * 120.00106 * 2 1 3 33 33 H 1.08996 * 109.47080 * 240.00953 * 2 1 3 34 34 H 0.97005 * 120.00109 * 180.02562 * 8 7 5 35 35 H 1.08001 * 125.97539 * 0.02562 * 17 16 14 36 36 H 1.07994 * 120.03481 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.96847 * 180.27162 * 22 21 20 38 38 H 1.09004 * 109.46772 * 269.97395 * 24 23 22 39 39 H 1.08997 * 109.47737 * 29.97235 * 24 23 22 40 40 H 1.08999 * 109.46806 * 149.97639 * 24 23 22 41 41 H 1.08001 * 119.96286 * 180.02562 * 25 23 22 42 42 H 1.08005 * 120.03383 * 179.97438 * 26 25 23 43 43 H 1.09004 * 109.47233 * 264.73894 * 28 27 19 44 44 H 1.08998 * 109.47412 * 24.74186 * 28 27 19 45 45 H 1.09003 * 109.46994 * 144.74125 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1470 1.8891 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3817 10 1 6.4994 2.2817 1.3822 11 1 6.3978 0.2168 2.6503 12 1 6.5975 0.1476 0.2348 13 8 1.6557 2.0918 -1.2407 14 6 0.4678 2.7280 -1.2559 15 8 -0.2277 2.7403 -0.2595 16 6 0.0131 3.4093 -2.4798 17 6 0.7118 3.4864 -3.7065 18 7 -0.0184 4.1682 -4.5455 19 7 -1.1974 4.5638 -3.9041 20 6 -2.2290 5.3186 -4.4789 21 6 -2.6473 5.0510 -5.7756 22 6 -3.6683 5.7925 -6.3370 23 6 -4.2654 6.8086 -5.6137 24 6 -5.3747 7.6201 -6.2318 25 6 -3.8472 7.0812 -4.3241 26 6 -2.8308 6.3392 -3.7550 27 6 -1.1734 4.0978 -2.6426 28 6 -2.2437 4.2907 -1.5995 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.8293 -0.0611 2.9498 35 1 1.6792 3.0534 -3.9139 36 1 -2.1778 4.2611 -6.3428 37 1 -3.9972 5.5821 -7.3440 38 1 -4.9508 8.4826 -6.7460 39 1 -5.9214 7.0040 -6.9457 40 1 -6.0543 7.9607 -5.4506 41 1 -4.3157 7.8751 -3.7615 42 1 -2.5043 6.5528 -2.7479 43 1 -1.9935 5.1495 -0.9766 44 1 -3.2018 4.4641 -2.0896 45 1 -2.3101 3.3979 -0.9776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:55 Heat of formation + Delta-G solvation = 4.427909 kcal Electronic energy + Delta-G solvation = -27281.054005 eV Core-core repulsion = 23457.985721 eV Total energy + Delta-G solvation = -3823.068284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76548 -39.62026 -39.00193 -35.64325 -34.53297 -33.40162 -32.46149 -31.36905 -31.28253 -30.87505 -27.85964 -26.98619 -26.69504 -23.66976 -23.28835 -22.64699 -22.15344 -20.69994 -19.88848 -19.16078 -17.86488 -16.73318 -16.24291 -16.15367 -15.85024 -15.41243 -15.26234 -14.87646 -14.51414 -14.32326 -14.12499 -14.02272 -13.91534 -13.25958 -12.95456 -12.89208 -12.78314 -12.63349 -12.45188 -12.26369 -12.04241 -11.87780 -11.51995 -11.40800 -11.30477 -11.13403 -10.90340 -10.79970 -10.59684 -10.24522 -10.03329 -9.73128 -9.53608 -9.40570 -9.28862 -8.93505 -8.74444 -8.41835 -8.33124 -6.14103 -4.20641 0.55737 0.93417 1.65176 2.16587 2.28961 3.25033 3.29341 3.32768 3.35393 3.79084 3.82960 4.33913 4.39473 4.42837 4.44484 4.57274 4.71997 4.86473 4.92396 5.02619 5.17204 5.17893 5.25036 5.27949 5.41592 5.48534 5.53892 5.59548 5.68784 5.84447 5.97099 5.98235 6.13524 6.14428 6.29313 6.36791 6.37876 6.48099 6.57101 6.94538 6.97875 7.03546 7.23385 7.33297 7.52380 7.66954 7.80107 8.01719 8.21868 8.72687 8.98055 9.44375 10.92620 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.002430 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.774241 B =11517.877595 C =11841.286161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 O -0.351 6.351 14 C 0.533 3.467 15 O -0.523 6.523 16 C -0.262 4.262 17 C 0.112 3.888 18 N -0.301 5.301 19 N -0.321 5.321 20 C 0.145 3.855 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.086 4.086 24 C -0.115 4.115 25 C -0.102 4.102 26 C -0.119 4.119 27 C 0.157 3.843 28 C -0.100 4.100 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.204 0.796 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.790 11.979 -14.602 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.267 6.267 14 C 0.378 3.622 15 O -0.415 6.415 16 C -0.274 4.274 17 C -0.076 4.076 18 N -0.117 5.117 19 N -0.096 5.096 20 C 0.054 3.946 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.172 4.172 25 C -0.121 4.121 26 C -0.139 4.139 27 C 0.029 3.971 28 C -0.158 4.158 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.220 0.780 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.056 12.348 -15.329 26.045 hybrid contribution 1.198 -0.499 1.012 1.646 sum -15.858 11.849 -14.317 24.430 Atomic orbital electron populations 1.21853 0.98412 0.98869 1.00797 1.22015 0.92638 0.99413 1.03275 1.20651 0.94857 0.88691 0.78660 0.93467 1.21013 0.89749 1.38836 1.06187 0.91378 1.24871 0.99122 0.94838 0.95115 1.69880 1.35390 1.37879 1.09472 0.86359 0.84047 0.78449 0.77418 1.20029 1.21102 1.19965 1.86519 1.33547 1.62583 1.44002 1.19683 0.80768 0.76058 0.85729 1.90740 1.55733 1.59949 1.35072 1.19440 0.97636 1.13899 0.96421 1.24381 0.99362 0.94013 0.89858 1.77329 0.93309 1.20144 1.20930 1.45539 1.14914 1.40690 1.08440 1.17422 0.89461 0.93452 0.94255 1.21053 0.96689 1.00378 0.93823 1.20956 0.95877 0.95417 1.00079 1.20054 0.97732 0.96571 0.94330 1.20813 0.95963 0.99401 1.00992 1.20894 0.96773 0.99508 0.94904 1.21147 0.97798 0.93990 1.00946 1.21560 0.96331 0.93061 0.86137 1.20784 0.93691 1.05891 0.95433 0.94991 0.94855 0.92812 0.87407 0.94026 0.92400 0.77976 0.84792 0.85038 0.90879 0.91294 0.91265 0.84907 0.84862 0.89154 0.91001 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.95 2.25 -27.88 -0.06 5.89 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.54 8.90 -34.44 -0.31 -14.85 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.45 16 9 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.35 -8.40 9.65 -40.66 -0.39 -8.80 16 14 C 0.53 11.49 6.40 34.40 0.22 11.71 16 15 O -0.52 -11.90 12.16 -19.28 -0.23 -12.13 16 16 C -0.26 -4.70 6.13 -105.06 -0.64 -5.35 16 17 C 0.11 1.82 11.87 -16.94 -0.20 1.62 16 18 N -0.30 -4.76 12.33 30.88 0.38 -4.38 16 19 N -0.32 -4.69 3.67 -6.50 -0.02 -4.71 16 20 C 0.14 1.73 6.05 -83.60 -0.51 1.23 16 21 C -0.10 -1.04 9.84 -39.40 -0.39 -1.43 16 22 C -0.10 -0.83 9.69 -39.61 -0.38 -1.22 16 23 C -0.09 -0.63 5.88 -104.59 -0.62 -1.24 16 24 C -0.12 -0.53 10.01 36.01 0.36 -0.16 16 25 C -0.10 -0.78 9.69 -39.61 -0.38 -1.16 16 26 C -0.12 -1.15 8.27 -39.40 -0.33 -1.48 16 27 C 0.16 2.42 6.82 -81.46 -0.56 1.86 16 28 C -0.10 -1.25 8.16 36.01 0.29 -0.96 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.71 6.06 -51.93 -0.31 0.40 16 31 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 32 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.20 2.87 8.06 -52.49 -0.42 2.45 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 1.20 6.92 -52.48 -0.36 0.84 16 43 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 44 H 0.07 0.72 6.87 -51.93 -0.36 0.36 16 45 H 0.11 1.53 6.80 -51.93 -0.35 1.18 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -31.78 373.82 -8.69 -40.47 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.24 Total: 2.53 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.42 Total: -10.26 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.98 Total: -33.54 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.63 Total: -20.93 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.78 -8.69 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.894 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds