Wall clock time and date at job start Tue Mar 31 2020 15:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46567 * 2 1 4 4 H 1.09001 * 109.46967 * 55.00825 * 3 2 1 5 5 C 1.50705 * 109.46547 * 175.00013 * 3 2 1 6 6 H 1.07996 * 119.99566 * 120.00688 * 5 3 2 7 7 C 1.37875 * 120.00037 * 299.99873 * 5 3 2 8 8 N 1.31509 * 120.00197 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99742 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47230 * 60.00518 * 9 7 5 11 11 H 1.48506 * 109.46875 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47391 * 300.00282 * 9 7 5 13 13 O 1.45197 * 109.47407 * 294.99997 * 3 2 1 14 14 C 1.34761 * 116.99557 * 90.00092 * 13 3 2 15 15 O 1.21523 * 120.00485 * 0.02562 * 14 13 3 16 16 C 1.47274 * 119.99573 * 179.97438 * 14 13 3 17 17 C 1.41381 * 126.42124 * 359.69293 * 16 14 13 18 18 N 1.30459 * 108.05582 * 179.81137 * 17 16 14 19 19 N 1.39926 * 108.93825 * 0.44819 * 18 17 16 20 20 C 1.40155 * 125.76467 * 179.68792 * 19 18 17 21 21 C 1.38846 * 120.06316 * 42.05017 * 20 19 18 22 22 C 1.38115 * 119.92695 * 179.69896 * 21 20 19 23 23 C 1.38284 * 120.06834 * 0.60031 * 22 21 20 24 24 C 1.50703 * 119.93066 * 179.70242 * 23 22 21 25 25 C 1.38280 * 120.13518 * 359.67416 * 23 22 21 26 26 C 1.38110 * 120.06777 * 0.02562 * 25 23 22 27 27 C 1.34503 * 108.47551 * 359.71166 * 19 18 17 28 28 C 1.50701 * 126.31322 * 180.02562 * 27 19 18 29 29 H 1.08998 * 109.47220 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47242 * 59.99894 * 1 2 3 31 31 H 1.09003 * 109.47501 * 299.99812 * 1 2 3 32 32 H 1.09001 * 109.47242 * 120.00106 * 2 1 3 33 33 H 1.08996 * 109.47080 * 240.00953 * 2 1 3 34 34 H 0.97005 * 120.00109 * 180.02562 * 8 7 5 35 35 H 1.08001 * 125.97539 * 0.02562 * 17 16 14 36 36 H 1.07994 * 120.03481 * 359.97438 * 21 20 19 37 37 H 1.08001 * 119.96847 * 180.27162 * 22 21 20 38 38 H 1.09004 * 109.46772 * 269.97395 * 24 23 22 39 39 H 1.08997 * 109.47737 * 29.97235 * 24 23 22 40 40 H 1.08999 * 109.46806 * 149.97639 * 24 23 22 41 41 H 1.08001 * 119.96286 * 180.02562 * 25 23 22 42 42 H 1.08005 * 120.03383 * 179.97438 * 26 25 23 43 43 H 1.09004 * 109.47233 * 264.73894 * 28 27 19 44 44 H 1.08998 * 109.47412 * 24.74186 * 28 27 19 45 45 H 1.09003 * 109.46994 * 144.74125 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1470 1.8891 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8814 1.3817 10 1 6.4994 2.2817 1.3822 11 1 6.3978 0.2168 2.6503 12 1 6.5975 0.1476 0.2348 13 8 1.6557 2.0918 -1.2407 14 6 0.4678 2.7280 -1.2559 15 8 -0.2277 2.7403 -0.2595 16 6 0.0131 3.4093 -2.4798 17 6 0.7118 3.4864 -3.7065 18 7 -0.0184 4.1682 -4.5455 19 7 -1.1974 4.5638 -3.9041 20 6 -2.2290 5.3186 -4.4789 21 6 -2.6473 5.0510 -5.7756 22 6 -3.6683 5.7925 -6.3370 23 6 -4.2654 6.8086 -5.6137 24 6 -5.3747 7.6201 -6.2318 25 6 -3.8472 7.0812 -4.3241 26 6 -2.8308 6.3392 -3.7550 27 6 -1.1734 4.0978 -2.6426 28 6 -2.2437 4.2907 -1.5995 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.8293 -0.0611 2.9498 35 1 1.6792 3.0534 -3.9139 36 1 -2.1778 4.2611 -6.3428 37 1 -3.9972 5.5821 -7.3440 38 1 -4.9508 8.4826 -6.7460 39 1 -5.9214 7.0040 -6.9457 40 1 -6.0543 7.9607 -5.4506 41 1 -4.3157 7.8751 -3.7615 42 1 -2.5043 6.5528 -2.7479 43 1 -1.9935 5.1495 -0.9766 44 1 -3.2018 4.4641 -2.0896 45 1 -2.3101 3.3979 -0.9776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:54 Heat of formation + Delta-G solvation = -11.211348 kcal Electronic energy + Delta-G solvation = -27281.732174 eV Core-core repulsion = 23457.985721 eV Total energy + Delta-G solvation = -3823.746454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.94553 -40.98471 -40.15184 -37.48892 -35.56524 -35.27141 -33.55011 -33.30015 -31.99871 -31.84369 -29.48192 -28.57709 -27.43610 -25.39418 -24.38396 -23.83729 -23.21624 -22.09497 -21.32118 -20.68304 -19.18822 -18.64758 -17.78857 -17.26305 -17.11078 -16.72711 -16.52407 -16.31184 -16.04406 -15.41136 -14.95803 -14.85727 -14.71629 -14.63185 -14.56949 -14.20604 -13.92795 -13.85232 -13.41801 -13.32300 -13.26606 -13.11338 -13.05015 -13.00013 -12.76643 -12.55104 -12.51229 -12.24712 -12.12572 -11.95617 -11.71686 -11.39980 -11.17586 -11.03761 -10.77593 -10.48852 -10.10398 -10.06854 -9.30948 -8.24047 -6.40077 -0.31845 0.26661 0.49443 0.96736 1.08155 1.43243 1.46691 1.54546 2.12635 2.20564 2.45427 2.59368 3.05385 3.38012 3.50808 3.73111 3.83459 3.85285 3.94608 4.04675 4.30648 4.33842 4.38618 4.43237 4.44088 4.48558 4.53716 4.60273 4.74167 4.77315 4.88727 4.89539 4.96336 4.99918 5.10802 5.12857 5.15805 5.26560 5.28279 5.32074 5.44591 5.55073 5.55526 5.69454 5.71663 6.00302 6.02465 6.17829 6.31103 6.64860 7.09117 7.31950 8.82522 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.002430 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.774241 B =11517.877595 C =11841.286161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.228 3.772 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.265 1.265 13 O -0.359 6.359 14 C 0.531 3.469 15 O -0.542 6.542 16 C -0.298 4.298 17 C 0.110 3.890 18 N -0.311 5.311 19 N -0.310 5.310 20 C 0.102 3.898 21 C -0.110 4.110 22 C -0.105 4.105 23 C -0.077 4.077 24 C -0.115 4.115 25 C -0.100 4.100 26 C -0.121 4.121 27 C 0.170 3.830 28 C -0.096 4.096 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.270 0.730 35 H 0.214 0.786 36 H 0.125 0.875 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.383 13.563 -16.097 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.027 0.973 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.802 3.198 10 H -0.195 1.195 11 H -0.202 1.202 12 H -0.190 1.190 13 O -0.275 6.275 14 C 0.378 3.622 15 O -0.435 6.435 16 C -0.311 4.311 17 C -0.078 4.078 18 N -0.127 5.127 19 N -0.084 5.084 20 C 0.013 3.987 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.077 4.077 24 C -0.172 4.172 25 C -0.118 4.118 26 C -0.141 4.141 27 C 0.039 3.961 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.143 0.857 37 H 0.173 0.827 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.678 13.952 -16.863 28.773 hybrid contribution 1.482 -0.832 1.363 2.179 sum -17.196 13.119 -15.500 26.609 Atomic orbital electron populations 1.21694 0.96283 1.00420 1.00133 1.21863 0.94494 0.98146 1.02204 1.20359 0.94390 0.89197 0.78527 0.97270 1.21301 0.90595 1.39879 1.06870 0.91706 1.25766 1.04059 0.93961 0.94408 1.70002 1.37376 1.37919 1.09813 0.85297 0.77941 0.78693 0.77850 1.19517 1.20195 1.18988 1.86498 1.35192 1.63258 1.42586 1.20185 0.79708 0.75561 0.86795 1.90715 1.55915 1.60753 1.36116 1.19280 0.99672 1.16412 0.95689 1.24542 0.99857 0.94104 0.89281 1.77282 0.93971 1.20274 1.21216 1.45732 1.14840 1.39833 1.07966 1.17832 0.90188 0.95166 0.95517 1.21125 0.97649 1.00853 0.93347 1.21256 0.94878 0.95016 1.01161 1.20474 0.97491 0.95751 0.94021 1.20902 0.95211 0.99424 1.01616 1.21263 0.95826 0.99473 0.95277 1.21306 0.98084 0.93599 1.01104 1.21889 0.95836 0.91398 0.86945 1.20853 0.94186 1.05551 0.94790 0.92214 0.94726 0.94189 0.89464 0.93839 0.92064 0.76932 0.85740 0.82673 0.89864 0.90218 0.89944 0.82069 0.84426 0.87734 0.88164 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.56 71.98 0.62 -5.14 16 2 C -0.13 -6.65 5.49 30.60 0.17 -6.48 16 3 C 0.23 12.71 2.25 29.85 0.07 12.78 16 4 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 5 C -0.55 -31.67 8.90 25.60 0.23 -31.44 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.00 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.67 11.29 21.45 0.24 -52.43 16 9 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 O -0.36 -18.01 9.65 -56.72 -0.55 -18.56 16 14 C 0.53 23.90 6.40 70.20 0.45 24.35 16 15 O -0.54 -25.79 12.16 19.76 0.24 -25.55 16 16 C -0.30 -11.06 6.13 -20.15 -0.12 -11.18 16 17 C 0.11 3.68 11.87 85.67 1.02 4.69 16 18 N -0.31 -9.97 12.33 -56.21 -0.69 -10.66 16 19 N -0.31 -9.01 3.67 -174.47 -0.64 -9.65 16 20 C 0.10 2.35 6.05 38.10 0.23 2.58 16 21 C -0.11 -2.18 9.84 22.39 0.22 -1.96 16 22 C -0.10 -1.40 9.69 22.25 0.22 -1.19 16 23 C -0.08 -0.84 5.88 -19.84 -0.12 -0.96 16 24 C -0.12 -0.56 10.01 71.24 0.71 0.15 16 25 C -0.10 -1.19 9.69 22.25 0.22 -0.98 16 26 C -0.12 -2.11 8.27 22.39 0.19 -1.92 16 27 C 0.17 5.26 6.82 42.13 0.29 5.55 16 28 C -0.10 -2.35 8.16 71.24 0.58 -1.77 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.03 1.52 6.06 -2.39 -0.01 1.50 16 31 H 0.04 1.88 7.79 -2.39 -0.02 1.86 16 32 H 0.09 4.87 5.95 -2.39 -0.01 4.85 16 33 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.21 6.31 8.06 -2.91 -0.02 6.29 16 36 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 40 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.14 2.21 6.92 -2.91 -0.02 2.19 16 43 H 0.10 2.27 8.07 -2.38 -0.02 2.25 16 44 H 0.10 1.85 6.87 -2.39 -0.02 1.83 16 45 H 0.09 2.60 6.80 -2.39 -0.02 2.58 16 Total: -1.00 -71.21 373.82 7.03 -64.18 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.00 Total: 18.61 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.40 Total: -11.49 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.09 Total: -72.75 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.31 Total: -44.11 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.21 7.03 -64.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.972 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds