Wall clock time and date at job start Tue Mar 31 2020 15:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46763 * 2 1 4 4 H 1.09003 * 109.47339 * 304.14479 * 3 2 1 5 5 C 1.50703 * 109.47158 * 184.14497 * 3 2 1 6 6 H 1.07999 * 120.00212 * 245.20113 * 5 3 2 7 7 C 1.37873 * 119.99789 * 65.19916 * 5 3 2 8 8 N 1.31517 * 120.00062 * 5.42615 * 7 5 3 9 9 Si 1.86806 * 119.99955 * 185.42538 * 7 5 3 10 10 H 1.48502 * 109.46848 * 85.00017 * 9 7 5 11 11 H 1.48498 * 109.47112 * 204.99856 * 9 7 5 12 12 H 1.48497 * 109.46921 * 324.99830 * 9 7 5 13 13 O 1.45199 * 109.47195 * 64.14689 * 3 2 1 14 14 C 1.34757 * 117.00287 * 270.00208 * 13 3 2 15 15 O 1.21534 * 119.99501 * 359.97438 * 14 13 3 16 16 C 1.47261 * 120.00348 * 179.97438 * 14 13 3 17 17 C 1.41385 * 126.42440 * 0.02562 * 16 14 13 18 18 N 1.30452 * 108.06239 * 179.97438 * 17 16 14 19 19 N 1.39936 * 108.93744 * 0.02562 * 18 17 16 20 20 C 1.40151 * 125.76008 * 180.02562 * 19 18 17 21 21 C 1.38840 * 120.07062 * 40.94298 * 20 19 18 22 22 C 1.38117 * 119.93132 * 179.78880 * 21 20 19 23 23 C 1.38276 * 120.06948 * 0.48664 * 22 21 20 24 24 C 1.50703 * 119.93356 * 179.76451 * 23 22 21 25 25 C 1.38284 * 120.13527 * 359.74552 * 23 22 21 26 26 C 1.38119 * 120.06375 * 0.02562 * 25 23 22 27 27 C 1.34509 * 108.47418 * 359.72482 * 19 18 17 28 28 C 1.50697 * 126.30982 * 180.27041 * 27 19 18 29 29 H 1.09007 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47589 * 60.00077 * 1 2 3 31 31 H 1.09005 * 109.47084 * 299.99251 * 1 2 3 32 32 H 1.08995 * 109.47589 * 119.99923 * 2 1 3 33 33 H 1.09005 * 109.47084 * 240.00749 * 2 1 3 34 34 H 0.97008 * 119.99689 * 180.02562 * 8 7 5 35 35 H 1.07999 * 125.96779 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.03333 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.96401 * 180.23331 * 22 21 20 38 38 H 1.09002 * 109.47156 * 269.97863 * 24 23 22 39 39 H 1.09000 * 109.46979 * 29.98319 * 24 23 22 40 40 H 1.09006 * 109.47033 * 149.98117 * 24 23 22 41 41 H 1.08003 * 119.96688 * 179.97438 * 25 23 22 42 42 H 1.08002 * 120.02863 * 179.97438 * 26 25 23 43 43 H 1.09003 * 109.46918 * 274.76990 * 28 27 19 44 44 H 1.08998 * 109.47361 * 34.77377 * 28 27 19 45 45 H 1.09001 * 109.47018 * 154.77882 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5434 1.4439 -0.1027 6 1 4.1404 1.8161 0.7168 7 6 4.1569 0.9699 -1.2428 8 7 3.4316 0.6164 -2.2814 9 14 6.0184 0.8297 -1.3124 10 1 6.4398 -0.4647 -0.7190 11 1 6.4672 0.8955 -2.7264 12 1 6.6278 1.9469 -0.5472 13 8 1.6384 2.0978 1.2319 14 6 0.4505 2.7340 1.2275 15 8 -0.2311 2.7413 0.2213 16 6 -0.0219 3.4203 2.4418 17 6 0.6565 3.4980 3.6798 18 7 -0.0827 4.1888 4.5034 19 7 -1.2528 4.5809 3.8437 20 6 -2.2924 5.3381 4.4004 21 6 -2.0029 6.4154 5.2270 22 6 -3.0296 7.1624 5.7706 23 6 -4.3449 6.8322 5.5005 24 6 -5.4628 7.6461 6.0996 25 6 -4.6366 5.7568 4.6815 26 6 -3.6141 5.0089 4.1311 27 6 -1.2083 4.1139 2.5830 28 6 -2.2602 4.3085 1.5216 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8632 0.2826 -3.0834 35 1 1.6185 3.0616 3.9045 36 1 -0.9758 6.6714 5.4416 37 1 -2.8049 8.0029 6.4106 38 1 -5.7452 7.2219 7.0631 39 1 -5.1292 8.6744 6.2389 40 1 -6.3227 7.6307 5.4298 41 1 -5.6649 5.5011 4.4727 42 1 -3.8426 4.1689 3.4919 43 1 -3.0257 3.5393 1.6234 44 1 -2.7156 5.2920 1.6374 45 1 -1.8000 4.2348 0.5362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787090421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:01 Heat of formation + Delta-G solvation = 3.176631 kcal Electronic energy + Delta-G solvation = -27280.643663 eV Core-core repulsion = 23457.521119 eV Total energy + Delta-G solvation = -3823.122544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76402 -39.61886 -39.00812 -35.65112 -34.52954 -33.36098 -32.45870 -31.44592 -31.27593 -30.88549 -27.86740 -26.98629 -26.69268 -23.66870 -23.28621 -22.65110 -22.15444 -20.71068 -19.91693 -19.18203 -17.86590 -16.73169 -16.24220 -16.15444 -15.83787 -15.38706 -15.28236 -14.90216 -14.55327 -14.27483 -14.12902 -14.02608 -13.91271 -13.20133 -12.99681 -12.92210 -12.80269 -12.62160 -12.48190 -12.27195 -12.04748 -11.87645 -11.53007 -11.46096 -11.27755 -11.14013 -10.93493 -10.77956 -10.60362 -10.22807 -10.03710 -9.78788 -9.54467 -9.40515 -9.28697 -8.93861 -8.77015 -8.42914 -8.32992 -6.15652 -4.20200 0.55562 0.93884 1.65646 2.16662 2.28744 3.25824 3.28111 3.33368 3.36671 3.78095 3.83127 4.33858 4.39701 4.43204 4.44879 4.57562 4.71960 4.87823 4.92741 5.03888 5.17449 5.17772 5.24541 5.28450 5.41199 5.45038 5.54057 5.60024 5.69767 5.84972 5.98258 5.99221 6.13395 6.14962 6.24892 6.32495 6.38432 6.45267 6.54929 6.90874 6.97768 7.02000 7.19762 7.28756 7.52348 7.65115 7.74260 7.95243 8.19407 8.72842 8.98535 9.44454 10.93070 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.002459 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.498321 B =11384.045679 C =11938.665944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.053 0.947 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.908 3.092 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.534 3.466 15 O -0.523 6.523 16 C -0.262 4.262 17 C 0.112 3.888 18 N -0.300 5.300 19 N -0.321 5.321 20 C 0.145 3.855 21 C -0.100 4.100 22 C -0.104 4.104 23 C -0.087 4.087 24 C -0.115 4.115 25 C -0.102 4.102 26 C -0.119 4.119 27 C 0.157 3.843 28 C -0.104 4.104 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.266 0.734 35 H 0.204 0.796 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 11.597 14.580 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.735 3.265 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.266 6.266 14 C 0.378 3.622 15 O -0.415 6.415 16 C -0.274 4.274 17 C -0.076 4.076 18 N -0.117 5.117 19 N -0.096 5.096 20 C 0.055 3.945 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.172 4.172 25 C -0.121 4.121 26 C -0.140 4.140 27 C 0.029 3.971 28 C -0.162 4.162 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.270 12.006 15.287 26.002 hybrid contribution 1.187 -0.642 -0.968 1.661 sum -16.083 11.364 14.319 24.348 Atomic orbital electron populations 1.21860 0.98180 0.98978 1.01019 1.21922 0.92887 0.99453 1.02398 1.20657 0.94750 0.88415 0.79219 0.92905 1.21009 0.89570 1.43031 1.02297 0.91331 1.24889 0.99081 0.95134 0.94773 1.69966 1.35620 1.43057 1.03813 0.86350 0.84189 0.78773 0.77198 1.20300 1.21105 1.19686 1.86516 1.33496 1.62400 1.44217 1.19683 0.80687 0.76100 0.85710 1.90729 1.56724 1.59754 1.34275 1.19437 0.97991 1.13684 0.96246 1.24379 0.99204 0.94062 0.89970 1.77324 0.93810 1.20038 1.20539 1.45550 1.15419 1.40662 1.07954 1.17426 0.85251 0.92612 0.99260 1.21055 1.00690 0.93177 0.97067 1.20956 0.91525 0.99895 0.99926 1.20051 0.94951 0.96341 0.97388 1.20813 0.96251 0.99172 1.00926 1.20893 0.98968 0.94985 0.97211 1.21140 0.90448 1.00783 1.01582 1.21569 0.96366 0.93100 0.86022 1.20850 0.95739 1.02187 0.97459 0.94929 0.92636 0.94657 0.93761 0.88933 0.92456 0.77975 0.84766 0.85040 0.90890 0.91295 0.91271 0.84921 0.84878 0.89530 0.90828 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.55 37.16 0.32 -2.79 16 2 C -0.13 -3.16 5.53 -26.73 -0.15 -3.31 16 3 C 0.22 5.88 2.13 -27.88 -0.06 5.82 16 4 H 0.05 1.56 7.14 -51.93 -0.37 1.19 16 5 C -0.52 -14.56 8.83 -34.44 -0.30 -14.86 16 6 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 7 C 0.06 1.75 5.23 -17.82 -0.09 1.66 16 8 N -0.89 -25.23 11.95 55.43 0.66 -24.57 16 9 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 O -0.35 -8.36 9.64 -40.65 -0.39 -8.76 16 14 C 0.53 11.47 6.37 34.40 0.22 11.69 16 15 O -0.52 -11.87 11.93 -19.29 -0.23 -12.10 16 16 C -0.26 -4.69 6.13 -105.07 -0.64 -5.33 16 17 C 0.11 1.81 11.87 -16.94 -0.20 1.61 16 18 N -0.30 -4.76 12.31 30.88 0.38 -4.37 16 19 N -0.32 -4.69 3.68 -6.50 -0.02 -4.71 16 20 C 0.15 1.74 6.11 -83.61 -0.51 1.23 16 21 C -0.10 -1.05 9.82 -39.40 -0.39 -1.44 16 22 C -0.10 -0.84 9.69 -39.61 -0.38 -1.22 16 23 C -0.09 -0.63 5.88 -104.59 -0.62 -1.25 16 24 C -0.11 -0.53 10.01 36.01 0.36 -0.17 16 25 C -0.10 -0.78 9.69 -39.61 -0.38 -1.16 16 26 C -0.12 -1.16 8.51 -39.40 -0.34 -1.49 16 27 C 0.16 2.42 6.82 -81.45 -0.56 1.87 16 28 C -0.10 -1.31 8.32 36.00 0.30 -1.01 16 29 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.05 1.26 7.74 -51.93 -0.40 0.85 16 31 H 0.03 0.75 6.07 -51.93 -0.32 0.43 16 32 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 2.45 6.63 -51.93 -0.34 2.11 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.20 2.86 8.06 -52.49 -0.42 2.44 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 40 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 41 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.13 1.19 6.56 -52.49 -0.34 0.84 16 43 H 0.09 0.93 7.59 -51.93 -0.39 0.54 16 44 H 0.07 0.76 7.46 -51.93 -0.39 0.37 16 45 H 0.11 1.66 6.27 -51.93 -0.33 1.34 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -31.88 374.29 -8.64 -40.52 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.23 Total: 2.42 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -3.42 Total: -10.15 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 1.02 Total: -33.66 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.62 Total: -20.86 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.88 -8.64 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.692 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds