Wall clock time and date at job start Tue Mar 31 2020 15:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46763 * 2 1 4 4 H 1.09003 * 109.47339 * 304.14479 * 3 2 1 5 5 C 1.50703 * 109.47158 * 184.14497 * 3 2 1 6 6 H 1.07999 * 120.00212 * 245.20113 * 5 3 2 7 7 C 1.37873 * 119.99789 * 65.19916 * 5 3 2 8 8 N 1.31517 * 120.00062 * 5.42615 * 7 5 3 9 9 Si 1.86806 * 119.99955 * 185.42538 * 7 5 3 10 10 H 1.48502 * 109.46848 * 85.00017 * 9 7 5 11 11 H 1.48498 * 109.47112 * 204.99856 * 9 7 5 12 12 H 1.48497 * 109.46921 * 324.99830 * 9 7 5 13 13 O 1.45199 * 109.47195 * 64.14689 * 3 2 1 14 14 C 1.34757 * 117.00287 * 270.00208 * 13 3 2 15 15 O 1.21534 * 119.99501 * 359.97438 * 14 13 3 16 16 C 1.47261 * 120.00348 * 179.97438 * 14 13 3 17 17 C 1.41385 * 126.42440 * 0.02562 * 16 14 13 18 18 N 1.30452 * 108.06239 * 179.97438 * 17 16 14 19 19 N 1.39936 * 108.93744 * 0.02562 * 18 17 16 20 20 C 1.40151 * 125.76008 * 180.02562 * 19 18 17 21 21 C 1.38840 * 120.07062 * 40.94298 * 20 19 18 22 22 C 1.38117 * 119.93132 * 179.78880 * 21 20 19 23 23 C 1.38276 * 120.06948 * 0.48664 * 22 21 20 24 24 C 1.50703 * 119.93356 * 179.76451 * 23 22 21 25 25 C 1.38284 * 120.13527 * 359.74552 * 23 22 21 26 26 C 1.38119 * 120.06375 * 0.02562 * 25 23 22 27 27 C 1.34509 * 108.47418 * 359.72482 * 19 18 17 28 28 C 1.50697 * 126.30982 * 180.27041 * 27 19 18 29 29 H 1.09007 * 109.47008 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47589 * 60.00077 * 1 2 3 31 31 H 1.09005 * 109.47084 * 299.99251 * 1 2 3 32 32 H 1.08995 * 109.47589 * 119.99923 * 2 1 3 33 33 H 1.09005 * 109.47084 * 240.00749 * 2 1 3 34 34 H 0.97008 * 119.99689 * 180.02562 * 8 7 5 35 35 H 1.07999 * 125.96779 * 359.97438 * 17 16 14 36 36 H 1.08005 * 120.03333 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.96401 * 180.23331 * 22 21 20 38 38 H 1.09002 * 109.47156 * 269.97863 * 24 23 22 39 39 H 1.09000 * 109.46979 * 29.98319 * 24 23 22 40 40 H 1.09006 * 109.47033 * 149.98117 * 24 23 22 41 41 H 1.08003 * 119.96688 * 179.97438 * 25 23 22 42 42 H 1.08002 * 120.02863 * 179.97438 * 26 25 23 43 43 H 1.09003 * 109.46918 * 274.76990 * 28 27 19 44 44 H 1.08998 * 109.47361 * 34.77377 * 28 27 19 45 45 H 1.09001 * 109.47018 * 154.77882 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6172 1.9774 -0.8505 5 6 3.5434 1.4439 -0.1027 6 1 4.1404 1.8161 0.7168 7 6 4.1569 0.9699 -1.2428 8 7 3.4316 0.6164 -2.2814 9 14 6.0184 0.8297 -1.3124 10 1 6.4398 -0.4647 -0.7190 11 1 6.4672 0.8955 -2.7264 12 1 6.6278 1.9469 -0.5472 13 8 1.6384 2.0978 1.2319 14 6 0.4505 2.7340 1.2275 15 8 -0.2311 2.7413 0.2213 16 6 -0.0219 3.4203 2.4418 17 6 0.6565 3.4980 3.6798 18 7 -0.0827 4.1888 4.5034 19 7 -1.2528 4.5809 3.8437 20 6 -2.2924 5.3381 4.4004 21 6 -2.0029 6.4154 5.2270 22 6 -3.0296 7.1624 5.7706 23 6 -4.3449 6.8322 5.5005 24 6 -5.4628 7.6461 6.0996 25 6 -4.6366 5.7568 4.6815 26 6 -3.6141 5.0089 4.1311 27 6 -1.2083 4.1139 2.5830 28 6 -2.2602 4.3085 1.5216 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 3.8632 0.2826 -3.0834 35 1 1.6185 3.0616 3.9045 36 1 -0.9758 6.6714 5.4416 37 1 -2.8049 8.0029 6.4106 38 1 -5.7452 7.2219 7.0631 39 1 -5.1292 8.6744 6.2389 40 1 -6.3227 7.6307 5.4298 41 1 -5.6649 5.5011 4.4727 42 1 -3.8426 4.1689 3.4919 43 1 -3.0257 3.5393 1.6234 44 1 -2.7156 5.2920 1.6374 45 1 -1.8000 4.2348 0.5362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787090421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:59 Heat of formation + Delta-G solvation = -12.658042 kcal Electronic energy + Delta-G solvation = -27281.330306 eV Core-core repulsion = 23457.521119 eV Total energy + Delta-G solvation = -3823.809187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.94199 -40.98608 -40.14685 -37.48740 -35.54246 -35.24558 -33.55574 -33.36851 -31.99061 -31.84076 -29.48178 -28.57646 -27.43208 -25.38878 -24.38821 -23.83606 -23.20986 -22.11269 -21.32638 -20.69425 -19.18927 -18.63882 -17.78633 -17.26903 -17.11208 -16.71667 -16.50293 -16.32555 -16.04559 -15.44006 -14.88988 -14.85221 -14.68715 -14.67639 -14.57629 -14.25342 -13.91358 -13.87315 -13.41874 -13.36412 -13.26860 -13.08439 -13.05905 -13.01132 -12.78353 -12.54742 -12.49324 -12.23505 -12.12607 -11.93911 -11.74525 -11.40897 -11.15809 -11.03772 -10.78772 -10.51243 -10.10040 -10.06848 -9.29995 -8.26402 -6.40204 -0.32239 0.27124 0.50357 0.97707 1.07956 1.42888 1.45087 1.55256 2.12510 2.21054 2.45212 2.59776 3.04934 3.38604 3.50443 3.73857 3.83782 3.85375 3.94801 4.04910 4.31085 4.34133 4.37227 4.41341 4.43012 4.46818 4.54771 4.59327 4.74696 4.77227 4.89050 4.89632 4.97926 5.00786 5.10664 5.12022 5.15877 5.25649 5.28436 5.32227 5.42640 5.55366 5.55978 5.66192 5.69822 5.94983 6.01292 6.17711 6.31417 6.65761 7.09237 7.31719 8.82612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028035 B = 0.002459 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.498321 B =11384.045679 C =11938.665944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.227 3.773 4 H 0.013 0.987 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.267 1.267 13 O -0.359 6.359 14 C 0.531 3.469 15 O -0.542 6.542 16 C -0.298 4.298 17 C 0.110 3.890 18 N -0.311 5.311 19 N -0.311 5.311 20 C 0.103 3.897 21 C -0.111 4.111 22 C -0.105 4.105 23 C -0.078 4.078 24 C -0.115 4.115 25 C -0.100 4.100 26 C -0.121 4.121 27 C 0.170 3.830 28 C -0.100 4.100 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.270 0.730 35 H 0.214 0.786 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.162 0.838 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 12.640 16.277 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.031 0.969 5 C -0.586 4.586 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.191 1.191 13 O -0.275 6.275 14 C 0.378 3.622 15 O -0.435 6.435 16 C -0.310 4.310 17 C -0.078 4.078 18 N -0.128 5.128 19 N -0.084 5.084 20 C 0.013 3.987 21 C -0.131 4.131 22 C -0.123 4.123 23 C -0.078 4.078 24 C -0.171 4.171 25 C -0.118 4.118 26 C -0.141 4.141 27 C 0.040 3.960 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.231 0.769 36 H 0.142 0.858 37 H 0.173 0.827 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.180 0.820 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.118 0.882 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.186 13.071 17.024 28.788 hybrid contribution 1.559 -0.799 -1.385 2.233 sum -17.627 12.273 15.639 26.569 Atomic orbital electron populations 1.21703 0.96015 1.00613 1.00309 1.21768 0.94774 0.97976 1.01462 1.20364 0.94251 0.89084 0.78951 0.96937 1.21303 0.90488 1.44001 1.02799 0.91666 1.25783 1.04048 0.94267 0.94072 1.70084 1.37676 1.43232 1.04313 0.85281 0.78016 0.79164 0.77474 1.19147 1.20398 1.19147 1.86493 1.35134 1.63069 1.42800 1.20185 0.79648 0.75616 0.86753 1.90708 1.56926 1.60555 1.35320 1.19277 0.99992 1.16206 0.95560 1.24544 0.99725 0.94096 0.89404 1.77278 0.94525 1.20124 1.20837 1.45737 1.15382 1.39790 1.07477 1.17836 0.85388 0.93853 1.01581 1.21124 1.01063 0.93528 0.97399 1.21249 0.91375 1.00041 0.99678 1.20471 0.95415 0.95867 0.96042 1.20901 0.95554 0.99234 1.01457 1.21270 0.99795 0.94393 0.96342 1.21308 0.89822 1.01250 1.01680 1.21900 0.95856 0.91514 0.86776 1.20912 0.95300 1.04429 0.95153 0.91995 0.94168 0.94468 0.93220 0.91072 0.92119 0.76907 0.85820 0.82748 0.89844 0.90281 0.89929 0.82017 0.84288 0.87322 0.88227 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.55 71.98 0.62 -5.08 16 2 C -0.12 -6.16 5.53 30.59 0.17 -5.99 16 3 C 0.23 12.57 2.13 29.85 0.06 12.63 16 4 H 0.01 0.80 7.14 -2.39 -0.02 0.78 16 5 C -0.55 -31.63 8.83 25.60 0.23 -31.40 16 6 H 0.07 3.70 7.82 -2.91 -0.02 3.68 16 7 C 0.02 1.02 5.23 84.65 0.44 1.47 16 8 N -0.92 -53.38 11.95 21.45 0.26 -53.12 16 9 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 O -0.36 -17.92 9.64 -56.68 -0.55 -18.47 16 14 C 0.53 23.88 6.37 70.19 0.45 24.32 16 15 O -0.54 -25.80 11.93 19.73 0.24 -25.57 16 16 C -0.30 -11.03 6.13 -20.15 -0.12 -11.15 16 17 C 0.11 3.67 11.87 85.67 1.02 4.69 16 18 N -0.31 -9.96 12.31 -56.21 -0.69 -10.65 16 19 N -0.31 -9.01 3.68 -174.47 -0.64 -9.65 16 20 C 0.10 2.36 6.11 38.10 0.23 2.59 16 21 C -0.11 -2.23 9.82 22.39 0.22 -2.01 16 22 C -0.11 -1.43 9.69 22.25 0.22 -1.21 16 23 C -0.08 -0.86 5.88 -19.84 -0.12 -0.97 16 24 C -0.12 -0.57 10.01 71.24 0.71 0.14 16 25 C -0.10 -1.18 9.69 22.25 0.22 -0.96 16 26 C -0.12 -2.08 8.51 22.39 0.19 -1.89 16 27 C 0.17 5.26 6.82 42.13 0.29 5.54 16 28 C -0.10 -2.45 8.32 71.23 0.59 -1.85 16 29 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.04 1.86 7.74 -2.39 -0.02 1.85 16 31 H 0.04 1.60 6.07 -2.38 -0.01 1.58 16 32 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 3.89 6.63 -2.38 -0.02 3.88 16 34 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 35 H 0.21 6.28 8.06 -2.91 -0.02 6.26 16 36 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.08 0.28 8.08 -2.39 -0.02 0.26 16 40 H 0.08 0.24 8.08 -2.38 -0.02 0.22 16 41 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.14 2.16 6.56 -2.91 -0.02 2.14 16 43 H 0.11 2.17 7.59 -2.39 -0.02 2.15 16 44 H 0.10 1.89 7.46 -2.39 -0.02 1.87 16 45 H 0.09 2.71 6.27 -2.39 -0.01 2.70 16 Total: -1.00 -71.78 374.29 7.05 -64.74 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.00 Total: 18.20 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.41 Total: -11.14 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.08 Total: -73.42 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.31 Total: -44.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -71.78 7.05 -64.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787090421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.078 kcal (2) G-P(sol) polarization free energy of solvation -71.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds