Wall clock time and date at job start Tue Mar 31 2020 15:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33005 * 119.99758 * 2 1 4 4 C 1.47068 * 120.00467 * 0.02562 * 3 2 1 5 5 O 1.21630 * 119.99733 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.39979 * 119.99897 * 175.38256 * 6 4 3 8 8 C 1.38916 * 120.00172 * 35.10795 * 7 6 4 9 9 C 1.38023 * 120.01302 * 179.97438 * 8 7 6 10 10 C 1.38888 * 119.99136 * 0.02562 * 9 8 7 11 11 C 1.38867 * 119.98593 * 359.97438 * 10 9 8 12 12 C 1.38028 * 120.04415 * 359.72993 * 11 10 9 13 13 C 1.50675 * 119.83217 * 180.02562 * 11 10 9 14 14 C 1.52901 * 109.53296 * 326.02310 * 13 11 10 15 15 C 1.50498 * 109.90779 * 48.65433 * 14 13 11 16 16 O 1.21293 * 119.61739 * 144.77816 * 15 14 13 17 17 N 1.34558 * 120.75769 * 324.77532 * 15 14 13 18 18 C 1.46503 * 119.77183 * 180.80175 * 17 15 14 19 19 C 1.53005 * 109.46912 * 269.99246 * 18 17 15 20 20 C 1.50694 * 109.47340 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99767 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00237 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00120 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99957 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47209 * 90.00041 * 24 22 20 26 26 H 1.48502 * 109.47309 * 209.99870 * 24 22 20 27 27 H 1.48497 * 109.47265 * 330.00419 * 24 22 20 28 28 H 1.08999 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47224 * 299.99195 * 1 2 3 30 30 H 1.08994 * 109.47217 * 59.99895 * 1 2 3 31 31 H 1.07997 * 119.99877 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.99724 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00005 * 355.39214 * 6 4 3 34 34 H 1.08001 * 119.99119 * 0.02759 * 8 7 6 35 35 H 1.07999 * 120.00235 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.01495 * 180.27446 * 12 11 10 37 37 H 1.08996 * 109.46215 * 86.04488 * 13 11 10 38 38 H 1.08999 * 109.46135 * 206.02206 * 13 11 10 39 39 H 1.09000 * 109.39781 * 168.78831 * 14 13 11 40 40 H 1.09005 * 109.40260 * 288.51481 * 14 13 11 41 41 H 1.08996 * 109.47483 * 29.99572 * 18 17 15 42 42 H 1.09008 * 109.47060 * 150.00131 * 18 17 15 43 43 H 1.09001 * 109.47205 * 300.00920 * 19 18 17 44 44 H 1.09008 * 109.46536 * 60.00564 * 19 18 17 45 45 H 0.97000 * 119.99606 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4367 2.4256 0.0006 5 8 0.2204 2.4256 0.0006 6 7 2.1106 3.5927 0.0011 7 6 1.4141 4.8031 -0.0960 8 6 0.1693 4.9383 0.5057 9 6 -0.5174 6.1318 0.4106 10 6 0.0360 7.1975 -0.2872 11 6 1.2803 7.0621 -0.8886 12 6 1.9702 5.8708 -0.7886 13 6 1.8777 8.2207 -1.6443 14 6 0.7631 9.0172 -2.3234 15 6 -0.3358 9.3048 -1.3362 16 8 -0.9376 10.3561 -1.3986 17 7 -0.6584 8.4092 -0.3853 18 6 -1.7437 8.7040 0.5536 19 6 -1.1761 9.4212 1.7802 20 6 -2.2923 9.7240 2.7463 21 1 -3.3052 9.4335 2.5093 22 6 -2.0206 10.3718 3.9326 23 7 -2.9946 10.6356 4.7760 24 14 -0.2686 10.8736 4.3427 25 1 -0.0112 12.2413 3.8246 26 1 -0.0814 10.8590 5.8158 27 1 0.6797 9.9195 3.7138 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.0470 -0.9353 -0.0004 32 1 3.2521 1.1519 -0.0004 33 1 3.0782 3.5941 0.0686 34 1 -0.2607 4.1097 1.0487 35 1 -1.4850 6.2369 0.8788 36 1 2.9399 5.7674 -1.2527 37 1 2.4159 8.8674 -0.9514 38 1 2.5672 7.8445 -2.4001 39 1 1.1673 9.9572 -2.6993 40 1 0.3604 8.4395 -3.1554 41 1 -2.4809 9.3432 0.0677 42 1 -2.2182 7.7731 0.8643 43 1 -0.4388 8.7821 2.2660 44 1 -0.7016 10.3521 1.4694 45 1 -2.8033 11.0910 5.6108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787514721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:12 Heat of formation + Delta-G solvation = -24.812082 kcal Electronic energy + Delta-G solvation = -27483.838621 eV Core-core repulsion = 23659.502396 eV Total energy + Delta-G solvation = -3824.336226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10583 -40.29556 -38.37115 -36.10522 -35.06615 -34.32283 -33.79608 -32.88133 -30.62226 -29.85123 -29.08447 -27.46141 -25.65824 -24.30573 -23.60968 -22.27913 -21.72723 -20.56617 -19.74259 -18.94327 -17.66373 -17.24756 -17.00628 -16.79643 -16.04759 -15.60344 -15.31080 -14.96987 -14.69834 -14.32186 -14.19038 -14.01467 -13.79335 -13.66659 -13.32761 -13.18191 -12.94638 -12.85578 -12.69411 -12.49323 -12.33104 -12.03866 -11.87875 -11.72560 -11.45832 -11.11948 -10.92465 -10.90092 -10.30378 -10.05667 -9.87784 -9.83510 -9.75739 -9.55207 -9.25453 -9.08391 -8.76531 -8.54369 -7.36910 -6.05596 -4.04461 0.91286 1.34858 1.38719 2.76558 2.89628 3.05445 3.17287 3.32237 3.38482 3.42928 3.86094 4.39983 4.45327 4.49797 4.59385 4.64594 4.71516 4.91904 4.94313 5.14029 5.25109 5.27842 5.28997 5.33237 5.45472 5.55992 5.59579 5.65273 5.69490 5.78208 5.91124 5.92242 5.98485 6.10289 6.17319 6.23564 6.28970 6.37792 6.49526 6.59407 6.72507 6.99214 7.22842 7.23998 7.28483 7.69209 7.75910 7.95567 8.30338 8.48621 8.97030 9.56267 11.07434 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003345 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.256564 B = 8367.607393 C = 9706.181077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C -0.233 4.233 4 C 0.540 3.460 5 O -0.520 6.520 6 N -0.667 5.667 7 C 0.109 3.891 8 C -0.085 4.085 9 C -0.131 4.131 10 C 0.166 3.834 11 C -0.116 4.116 12 C -0.109 4.109 13 C -0.072 4.072 14 C -0.137 4.137 15 C 0.511 3.489 16 O -0.520 6.520 17 N -0.549 5.549 18 C 0.113 3.887 19 C -0.020 4.020 20 C -0.519 4.519 21 H 0.075 0.925 22 C 0.071 3.929 23 N -0.900 5.900 24 Si 0.879 3.121 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.267 1.267 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.408 0.592 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.072 -20.020 -13.840 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.254 4.254 4 C 0.331 3.669 5 O -0.397 6.397 6 N -0.312 5.312 7 C 0.015 3.985 8 C -0.106 4.106 9 C -0.152 4.152 10 C 0.070 3.930 11 C -0.119 4.119 12 C -0.130 4.130 13 C -0.109 4.109 14 C -0.177 4.177 15 C 0.300 3.700 16 O -0.396 6.396 17 N -0.271 5.271 18 C -0.006 4.006 19 C -0.058 4.058 20 C -0.558 4.558 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.539 5.539 24 Si 0.706 3.294 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.191 1.191 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.244 0.756 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.785 -19.309 -13.726 27.926 hybrid contribution 1.555 0.290 0.495 1.658 sum 16.340 -19.019 -13.232 28.351 Atomic orbital electron populations 1.21128 0.91648 1.01329 1.04533 1.23829 0.97605 0.97161 0.88789 1.22512 1.00269 0.92139 1.10435 1.18752 0.87616 0.84158 0.76392 1.90812 1.13567 1.87231 1.48105 1.43302 1.10451 1.04228 1.73176 1.17535 0.94603 0.85816 1.00558 1.21076 0.94027 0.97408 0.98070 1.20930 1.01360 0.91299 1.01589 1.17773 0.91247 0.86142 0.97823 1.19226 0.93500 0.96107 1.03085 1.20403 1.00422 0.92031 1.00103 1.20369 0.97111 0.94484 0.98981 1.21688 0.94902 1.03079 0.98018 1.20630 0.84602 0.83338 0.81447 1.90751 1.52934 1.23822 1.72073 1.45921 1.34662 1.15424 1.31088 1.21960 0.87762 1.01091 0.89811 1.19842 0.97651 0.95622 0.92731 1.20916 0.94709 1.38338 1.01814 0.90710 1.24946 0.96965 0.95105 0.96029 1.69905 1.31775 1.41873 1.10322 0.86792 0.85777 0.79539 0.77309 1.20197 1.21267 1.19127 0.92847 0.89678 0.89766 0.85617 0.85429 0.75641 0.84005 0.84288 0.85482 0.89967 0.89503 0.87691 0.88331 0.89561 0.90224 0.96341 0.96480 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.45 36.01 0.30 -0.73 16 2 C -0.05 -0.34 10.35 -36.12 -0.37 -0.72 16 3 C -0.23 -1.58 10.03 -37.82 -0.38 -1.96 16 4 C 0.54 5.47 7.57 -12.68 -0.10 5.38 16 5 O -0.52 -6.92 10.50 5.25 0.06 -6.87 16 6 N -0.67 -6.04 5.33 -10.90 -0.06 -6.10 16 7 C 0.11 1.30 6.30 -83.65 -0.53 0.78 16 8 C -0.09 -1.22 8.69 -39.41 -0.34 -1.56 16 9 C -0.13 -2.06 9.33 -39.42 -0.37 -2.42 16 10 C 0.17 2.66 6.33 -83.65 -0.53 2.13 16 11 C -0.12 -1.50 5.65 -104.48 -0.59 -2.09 16 12 C -0.11 -1.18 9.60 -39.42 -0.38 -1.56 16 13 C -0.07 -0.76 5.99 -27.95 -0.17 -0.93 16 14 C -0.14 -1.66 6.07 -28.03 -0.17 -1.83 16 15 C 0.51 9.14 7.46 -11.18 -0.08 9.05 16 16 O -0.52 -11.36 16.61 5.55 0.09 -11.27 16 17 N -0.55 -10.09 2.69 -113.56 -0.31 -10.40 16 18 C 0.11 2.41 5.08 -4.04 -0.02 2.39 16 19 C -0.02 -0.51 4.36 -27.88 -0.12 -0.63 16 20 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 21 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 22 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 24 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.82 7.22 -51.93 -0.37 0.45 16 30 H 0.08 0.81 7.22 -51.93 -0.37 0.43 16 31 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.41 2.26 8.80 -40.82 -0.36 1.90 16 34 H 0.14 2.09 6.22 -52.49 -0.33 1.76 16 35 H 0.14 2.23 6.01 -52.49 -0.32 1.91 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.93 7.40 -51.93 -0.38 1.55 16 42 H 0.08 1.56 5.81 -51.92 -0.30 1.26 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 44 H 0.02 0.45 7.57 -51.92 -0.39 0.06 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -36.23 368.27 -9.00 -45.24 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.17 Total: 1.52 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -4.27 Total: -8.13 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.41 Total: -43.89 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.15 Total: -18.14 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.23 -9.00 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787514721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.426 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds