Wall clock time and date at job start Tue Mar 31 2020 15:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33005 * 119.99758 * 2 1 4 4 C 1.47068 * 120.00467 * 0.02562 * 3 2 1 5 5 O 1.21630 * 119.99733 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.39979 * 119.99897 * 175.38256 * 6 4 3 8 8 C 1.38916 * 120.00172 * 35.10795 * 7 6 4 9 9 C 1.38023 * 120.01302 * 179.97438 * 8 7 6 10 10 C 1.38888 * 119.99136 * 0.02562 * 9 8 7 11 11 C 1.38867 * 119.98593 * 359.97438 * 10 9 8 12 12 C 1.38028 * 120.04415 * 359.72993 * 11 10 9 13 13 C 1.50675 * 119.83217 * 180.02562 * 11 10 9 14 14 C 1.52901 * 109.53296 * 326.02310 * 13 11 10 15 15 C 1.50498 * 109.90779 * 48.65433 * 14 13 11 16 16 O 1.21293 * 119.61739 * 144.77816 * 15 14 13 17 17 N 1.34558 * 120.75769 * 324.77532 * 15 14 13 18 18 C 1.46503 * 119.77183 * 180.80175 * 17 15 14 19 19 C 1.53005 * 109.46912 * 269.99246 * 18 17 15 20 20 C 1.50694 * 109.47340 * 180.02562 * 19 18 17 21 21 H 1.08007 * 119.99767 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00237 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00120 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99957 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47209 * 90.00041 * 24 22 20 26 26 H 1.48502 * 109.47309 * 209.99870 * 24 22 20 27 27 H 1.48497 * 109.47265 * 330.00419 * 24 22 20 28 28 H 1.08999 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47224 * 299.99195 * 1 2 3 30 30 H 1.08994 * 109.47217 * 59.99895 * 1 2 3 31 31 H 1.07997 * 119.99877 * 180.02562 * 2 1 3 32 32 H 1.08004 * 119.99724 * 180.02562 * 3 2 1 33 33 H 0.96996 * 120.00005 * 355.39214 * 6 4 3 34 34 H 1.08001 * 119.99119 * 0.02759 * 8 7 6 35 35 H 1.07999 * 120.00235 * 180.02562 * 9 8 7 36 36 H 1.07998 * 120.01495 * 180.27446 * 12 11 10 37 37 H 1.08996 * 109.46215 * 86.04488 * 13 11 10 38 38 H 1.08999 * 109.46135 * 206.02206 * 13 11 10 39 39 H 1.09000 * 109.39781 * 168.78831 * 14 13 11 40 40 H 1.09005 * 109.40260 * 288.51481 * 14 13 11 41 41 H 1.08996 * 109.47483 * 29.99572 * 18 17 15 42 42 H 1.09008 * 109.47060 * 150.00131 * 18 17 15 43 43 H 1.09001 * 109.47205 * 300.00920 * 19 18 17 44 44 H 1.09008 * 109.46536 * 60.00564 * 19 18 17 45 45 H 0.97000 * 119.99606 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1519 0.0000 4 6 1.4367 2.4256 0.0006 5 8 0.2204 2.4256 0.0006 6 7 2.1106 3.5927 0.0011 7 6 1.4141 4.8031 -0.0960 8 6 0.1693 4.9383 0.5057 9 6 -0.5174 6.1318 0.4106 10 6 0.0360 7.1975 -0.2872 11 6 1.2803 7.0621 -0.8886 12 6 1.9702 5.8708 -0.7886 13 6 1.8777 8.2207 -1.6443 14 6 0.7631 9.0172 -2.3234 15 6 -0.3358 9.3048 -1.3362 16 8 -0.9376 10.3561 -1.3986 17 7 -0.6584 8.4092 -0.3853 18 6 -1.7437 8.7040 0.5536 19 6 -1.1761 9.4212 1.7802 20 6 -2.2923 9.7240 2.7463 21 1 -3.3052 9.4335 2.5093 22 6 -2.0206 10.3718 3.9326 23 7 -2.9946 10.6356 4.7760 24 14 -0.2686 10.8736 4.3427 25 1 -0.0112 12.2413 3.8246 26 1 -0.0814 10.8590 5.8158 27 1 0.6797 9.9195 3.7138 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.0470 -0.9353 -0.0004 32 1 3.2521 1.1519 -0.0004 33 1 3.0782 3.5941 0.0686 34 1 -0.2607 4.1097 1.0487 35 1 -1.4850 6.2369 0.8788 36 1 2.9399 5.7674 -1.2527 37 1 2.4159 8.8674 -0.9514 38 1 2.5672 7.8445 -2.4001 39 1 1.1673 9.9572 -2.6993 40 1 0.3604 8.4395 -3.1554 41 1 -2.4809 9.3432 0.0677 42 1 -2.2182 7.7731 0.8643 43 1 -0.4388 8.7821 2.2660 44 1 -0.7016 10.3521 1.4694 45 1 -2.8033 11.0910 5.6108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787514721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:11 Heat of formation + Delta-G solvation = -48.655730 kcal Electronic energy + Delta-G solvation = -27484.872560 eV Core-core repulsion = 23659.502396 eV Total energy + Delta-G solvation = -3825.370164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24777 -41.24997 -39.51107 -37.33825 -36.32246 -34.99761 -34.89808 -34.80245 -32.40179 -31.02355 -30.06420 -28.22762 -27.43001 -25.41434 -24.49283 -23.79218 -22.75243 -22.08167 -20.56978 -20.02875 -19.25541 -18.68613 -18.01944 -17.78399 -17.36749 -16.94561 -16.28269 -16.20327 -15.84443 -15.65767 -15.35592 -15.15411 -14.93498 -14.85630 -14.67078 -14.50487 -14.28563 -14.12815 -13.75251 -13.68866 -13.36294 -13.09339 -12.97918 -12.82438 -12.60809 -12.53802 -12.50439 -12.14682 -11.91452 -11.81041 -11.66262 -11.59466 -10.92440 -10.86182 -10.62389 -10.43745 -10.20000 -9.77042 -8.53151 -8.38394 -6.43938 0.05083 0.34847 0.56295 1.26952 1.28651 1.40519 1.51737 1.82084 2.17426 2.27634 2.28710 2.80853 2.95794 3.41046 3.67145 3.75616 3.81955 4.03348 4.11866 4.15297 4.19623 4.30046 4.34053 4.34874 4.43141 4.51567 4.66925 4.76677 4.78638 4.82031 4.85468 4.91501 4.96493 5.02213 5.13873 5.19120 5.21682 5.23545 5.33596 5.44750 5.46909 5.52319 5.63103 5.63659 5.97520 6.13975 6.38409 6.55995 6.60980 6.95057 7.20667 7.24632 8.77913 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011741 B = 0.003345 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.256564 B = 8367.607393 C = 9706.181077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 C -0.234 4.234 4 C 0.528 3.472 5 O -0.561 6.561 6 N -0.654 5.654 7 C 0.119 3.881 8 C -0.103 4.103 9 C -0.149 4.149 10 C 0.130 3.870 11 C -0.107 4.107 12 C -0.092 4.092 13 C -0.068 4.068 14 C -0.127 4.127 15 C 0.498 3.502 16 O -0.576 6.576 17 N -0.553 5.553 18 C 0.125 3.875 19 C -0.004 4.004 20 C -0.534 4.534 21 H 0.039 0.961 22 C 0.012 3.988 23 N -0.943 5.943 24 Si 0.948 3.052 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.253 1.253 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.429 0.571 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.178 0.822 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.021 0.979 44 H 0.004 0.996 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.677 -21.970 -15.596 34.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.069 4.069 3 C -0.254 4.254 4 C 0.321 3.679 5 O -0.441 6.441 6 N -0.300 5.300 7 C 0.024 3.976 8 C -0.124 4.124 9 C -0.170 4.170 10 C 0.036 3.964 11 C -0.110 4.110 12 C -0.112 4.112 13 C -0.104 4.104 14 C -0.166 4.166 15 C 0.290 3.710 16 O -0.455 6.455 17 N -0.275 5.275 18 C 0.003 3.997 19 C -0.043 4.043 20 C -0.572 4.572 21 H 0.057 0.943 22 C -0.185 4.185 23 N -0.583 5.583 24 Si 0.771 3.229 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.177 1.177 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.181 0.819 32 H 0.185 0.815 33 H 0.269 0.731 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.195 0.805 37 H 0.102 0.898 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.039 0.961 44 H 0.022 0.978 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.452 -21.317 -15.493 33.358 hybrid contribution -0.297 0.738 1.039 1.309 sum 20.156 -20.578 -14.454 32.228 Atomic orbital electron populations 1.21063 0.93674 1.01730 1.02352 1.24113 0.96361 0.98757 0.87709 1.22709 1.01901 0.90137 1.10650 1.19511 0.87419 0.85498 0.75443 1.90820 1.15654 1.87819 1.49820 1.43255 1.11416 1.02932 1.72446 1.17687 0.93611 0.87298 0.99049 1.21005 0.95656 0.96383 0.99359 1.20837 1.01083 0.92486 1.02571 1.18031 0.93039 0.85017 1.00325 1.19625 0.91905 0.97756 1.01751 1.20832 1.01695 0.90142 0.98530 1.20526 0.96822 0.93181 0.99908 1.21779 0.93245 1.04828 0.96731 1.21888 0.85241 0.82250 0.81651 1.90717 1.55184 1.26068 1.73550 1.45818 1.34199 1.16809 1.30686 1.21472 0.88573 1.00466 0.89210 1.19609 0.96125 0.95230 0.93307 1.21206 0.94503 1.38419 1.03121 0.94271 1.25904 1.01900 0.94970 0.95769 1.70040 1.34345 1.42841 1.11041 0.85698 0.79989 0.79418 0.77806 1.19558 1.19757 1.17684 0.91034 0.92176 0.91989 0.81891 0.81533 0.73111 0.85479 0.86553 0.80456 0.89767 0.84421 0.85834 0.86039 0.91810 0.89701 0.96089 0.97794 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.45 71.24 0.60 -1.45 16 2 C -0.05 -0.49 10.35 24.52 0.25 -0.23 16 3 C -0.23 -2.37 10.03 23.42 0.23 -2.14 16 4 C 0.53 9.75 7.57 86.56 0.66 10.40 16 5 O -0.56 -15.20 10.50 -4.13 -0.04 -15.25 16 6 N -0.65 -9.71 5.33 -306.65 -1.64 -11.34 16 7 C 0.12 2.54 6.30 38.16 0.24 2.78 16 8 C -0.10 -3.01 8.69 22.38 0.19 -2.81 16 9 C -0.15 -4.92 9.33 22.37 0.21 -4.71 16 10 C 0.13 4.15 6.33 38.14 0.24 4.39 16 11 C -0.11 -2.41 5.65 -19.77 -0.11 -2.52 16 12 C -0.09 -1.55 9.60 22.38 0.21 -1.34 16 13 C -0.07 -1.09 5.99 29.81 0.18 -0.91 16 14 C -0.13 -2.68 6.07 29.75 0.18 -2.50 16 15 C 0.50 17.87 7.46 87.63 0.65 18.52 16 16 O -0.58 -26.10 16.61 -3.07 -0.05 -26.15 16 17 N -0.55 -20.94 2.69 -631.71 -1.70 -22.64 16 18 C 0.12 5.67 5.08 86.38 0.44 6.11 16 19 C 0.00 -0.23 4.36 29.85 0.13 -0.10 16 20 C -0.53 -32.86 9.66 25.60 0.25 -32.61 16 21 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 22 C 0.01 0.77 5.47 84.65 0.46 1.23 16 23 N -0.94 -61.07 13.96 21.45 0.30 -60.77 16 24 Si 0.95 47.01 27.47 68.60 1.88 48.89 16 25 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 30 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 31 H 0.16 0.40 8.06 -2.91 -0.02 0.37 16 32 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 33 H 0.43 2.65 8.80 -92.71 -0.82 1.83 16 34 H 0.13 4.02 6.22 -2.91 -0.02 4.00 16 35 H 0.12 4.19 6.01 -2.91 -0.02 4.17 16 36 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.14 0.95 8.06 -2.39 -0.02 0.93 16 39 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.06 3.14 7.40 -2.39 -0.02 3.12 16 42 H 0.08 3.69 5.81 -2.38 -0.01 3.67 16 43 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 44 H 0.00 0.20 7.57 -2.38 -0.02 0.19 16 45 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -87.07 368.27 3.93 -83.14 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.15 Total: 11.99 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.03 Total: -7.88 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.04 Total: -94.75 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.09 Total: -41.40 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.88 Total: 48.89 kcal Total: -87.07 3.93 -83.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787514721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.489 kcal (2) G-P(sol) polarization free energy of solvation -87.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds