Wall clock time and date at job start Tue Mar 31 2020 15:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33019 * 120.00142 * 2 1 4 4 C 1.47067 * 119.99893 * 179.72878 * 3 2 1 5 5 O 1.21633 * 119.99920 * 0.27345 * 4 3 2 6 6 N 1.34778 * 119.99642 * 180.27434 * 4 3 2 7 7 C 1.39985 * 119.99735 * 175.38535 * 6 4 3 8 8 C 1.38908 * 120.00136 * 35.10562 * 7 6 4 9 9 C 1.38023 * 120.01365 * 179.97438 * 8 7 6 10 10 C 1.38884 * 119.98831 * 0.02562 * 9 8 7 11 11 C 1.38879 * 119.99056 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.03632 * 359.70843 * 11 10 9 13 13 C 1.50667 * 119.83509 * 180.02562 * 11 10 9 14 14 C 1.52897 * 109.53821 * 326.02816 * 13 11 10 15 15 C 1.50500 * 109.90904 * 48.64830 * 14 13 11 16 16 O 1.21293 * 119.61933 * 144.75660 * 15 14 13 17 17 N 1.34558 * 120.75672 * 324.78016 * 15 14 13 18 18 C 1.46502 * 119.77259 * 180.81290 * 17 15 14 19 19 C 1.52995 * 109.47622 * 269.98078 * 18 17 15 20 20 C 1.50700 * 109.47289 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00247 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99888 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00128 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46989 * 89.99483 * 24 22 20 26 26 H 1.48496 * 109.47234 * 209.99921 * 24 22 20 27 27 H 1.48503 * 109.46814 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47413 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47046 * 299.99840 * 1 2 3 30 30 H 1.09004 * 109.47525 * 59.99487 * 1 2 3 31 31 H 1.07997 * 119.99876 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.99598 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00051 * 355.39029 * 6 4 3 34 34 H 1.08005 * 119.99634 * 0.02562 * 8 7 6 35 35 H 1.07995 * 120.00690 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.01651 * 180.31098 * 12 11 10 37 37 H 1.09000 * 109.46159 * 86.04548 * 13 11 10 38 38 H 1.09003 * 109.46136 * 206.02038 * 13 11 10 39 39 H 1.09004 * 109.40446 * 168.78491 * 14 13 11 40 40 H 1.09006 * 109.40154 * 288.51728 * 14 13 11 41 41 H 1.09007 * 109.47349 * 29.98592 * 18 17 15 42 42 H 1.09005 * 109.46926 * 149.97927 * 18 17 15 43 43 H 1.09004 * 109.46582 * 299.99907 * 19 18 17 44 44 H 1.08996 * 109.47122 * 59.99686 * 19 18 17 45 45 H 0.96998 * 120.00243 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6427 1.1519 0.0060 5 8 4.2508 0.0985 0.0060 6 7 4.3166 2.3191 0.0116 7 6 5.7126 2.3208 0.1149 8 6 6.4548 1.3121 -0.4861 9 6 7.8313 1.3138 -0.3849 10 6 8.4743 2.3241 0.3185 11 6 7.7321 3.3319 0.9202 12 6 6.3559 3.3336 0.8145 13 6 8.4334 4.4265 1.6818 14 6 9.6783 3.8582 2.3639 15 6 10.4809 3.0536 1.3773 16 8 11.6920 3.0588 1.4440 17 7 9.8705 2.3290 0.4219 18 6 10.6723 1.5395 -0.5162 19 6 11.0140 2.3930 -1.7391 20 6 11.8383 1.5806 -2.7043 21 1 12.0934 0.5580 -2.4689 22 6 12.2676 2.1433 -3.8876 23 7 11.9575 3.3888 -4.1742 24 14 13.2900 1.1365 -5.0837 25 1 12.3907 0.4327 -6.0330 26 1 14.1989 2.0369 -5.8377 27 1 14.0931 0.1396 -4.3311 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.0469 -0.9353 -0.0004 32 1 1.6320 2.0873 0.0004 33 1 3.8342 3.1580 -0.0558 34 1 5.9547 0.5267 -1.0334 35 1 8.4082 0.5297 -0.8525 36 1 5.7794 4.1202 1.2783 37 1 8.7266 5.2183 0.9924 38 1 7.7598 4.8330 2.4363 39 1 10.2884 4.6773 2.7445 40 1 9.3765 3.2178 3.1928 41 1 11.5928 1.2196 -0.0277 42 1 10.1051 0.6636 -0.8314 43 1 10.0934 2.7127 -2.2276 44 1 11.5811 3.2688 -1.4240 45 1 12.2592 3.7845 -5.0068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787514725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:19 Heat of formation + Delta-G solvation = -33.207162 kcal Electronic energy + Delta-G solvation = -27104.166718 eV Core-core repulsion = 23279.466454 eV Total energy + Delta-G solvation = -3824.700264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99720 -40.14976 -38.22203 -35.92790 -34.94926 -34.67841 -33.68420 -32.91450 -30.34062 -29.60996 -29.13821 -27.59575 -25.39703 -24.22637 -23.33356 -22.40732 -21.52651 -20.55012 -19.74855 -18.82110 -17.98505 -17.35435 -16.76515 -16.56841 -15.90582 -15.49325 -15.14492 -14.91231 -14.60781 -14.47029 -14.11620 -13.84693 -13.75511 -13.64084 -13.61329 -13.11290 -12.92176 -12.82016 -12.61038 -12.48172 -12.15565 -11.88485 -11.80762 -11.58130 -11.29277 -11.01268 -10.90177 -10.82656 -10.52746 -10.06223 -9.92717 -9.84973 -9.76820 -9.52528 -9.13034 -8.96529 -8.67882 -8.35291 -7.26385 -6.00283 -4.03733 0.91018 1.42666 1.46943 2.85766 2.92552 3.11789 3.28291 3.33419 3.39562 3.44013 3.95378 4.37731 4.47035 4.59842 4.61595 4.74284 4.80817 4.83773 5.02346 5.09124 5.11336 5.23499 5.34487 5.35974 5.37879 5.42293 5.53427 5.68973 5.74288 5.88749 5.95827 5.98925 6.02949 6.04136 6.19962 6.32594 6.42470 6.48629 6.59090 6.78325 6.85770 7.09910 7.27579 7.60055 7.68232 7.89359 7.98331 7.98932 8.32441 8.45066 9.02171 9.60042 11.11200 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003010 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.359425 B = 9299.112322 C =11118.739155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 C -0.225 4.225 4 C 0.543 3.457 5 O -0.528 6.528 6 N -0.664 5.664 7 C 0.105 3.895 8 C -0.085 4.085 9 C -0.131 4.131 10 C 0.171 3.829 11 C -0.116 4.116 12 C -0.107 4.107 13 C -0.072 4.072 14 C -0.137 4.137 15 C 0.511 3.489 16 O -0.522 6.522 17 N -0.546 5.546 18 C 0.104 3.896 19 C 0.016 3.984 20 C -0.520 4.520 21 H 0.058 0.942 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.895 3.105 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.409 0.591 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.994 0.283 12.316 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 C -0.246 4.246 4 C 0.334 3.666 5 O -0.405 6.405 6 N -0.309 5.309 7 C 0.011 3.989 8 C -0.105 4.105 9 C -0.152 4.152 10 C 0.075 3.925 11 C -0.119 4.119 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.177 4.177 15 C 0.300 3.700 16 O -0.397 6.397 17 N -0.268 5.268 18 C -0.015 4.015 19 C -0.022 4.022 20 C -0.559 4.559 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.531 5.531 24 Si 0.723 3.277 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.244 0.756 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.797 -0.334 12.250 25.882 hybrid contribution 0.262 0.063 -0.905 0.944 sum -22.534 -0.271 11.345 25.230 Atomic orbital electron populations 1.21033 0.91891 1.03457 1.02882 1.23805 0.96464 0.98651 0.89052 1.22484 0.92541 0.99892 1.09691 1.18706 0.88405 0.83424 0.76110 1.90809 1.69943 1.31128 1.48660 1.43263 1.05295 1.09435 1.72864 1.17518 0.82030 0.98479 1.00857 1.21053 0.92681 0.98719 0.98077 1.20894 0.94124 0.98577 1.01626 1.17769 0.82900 0.94400 0.97463 1.19224 0.93012 0.96569 1.03102 1.20391 0.93121 0.99308 0.99975 1.20366 0.95413 0.96235 0.98909 1.21682 0.97166 1.00831 0.97975 1.20597 0.88421 0.79476 0.81458 1.90740 1.14157 1.62553 1.72254 1.45901 1.04321 1.45765 1.30781 1.22188 0.94193 0.94444 0.90697 1.19354 0.97021 0.95489 0.90321 1.21049 1.33233 0.98668 1.02978 0.92424 1.24995 0.96197 0.94954 0.98099 1.69977 1.45952 1.12810 1.24395 0.86543 0.80171 0.79974 0.81034 1.20605 1.21186 1.19762 0.91131 0.90566 0.90501 0.85464 0.85454 0.75557 0.84142 0.84422 0.85477 0.89804 0.89585 0.87729 0.88479 0.90160 0.90858 0.96291 0.95973 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.53 10.18 36.00 0.37 -0.17 16 2 C -0.06 -0.41 9.84 -36.12 -0.36 -0.77 16 3 C -0.23 -1.65 9.67 -37.81 -0.37 -2.02 16 4 C 0.54 6.03 7.61 -12.68 -0.10 5.93 16 5 O -0.53 -7.93 13.65 5.25 0.07 -7.85 16 6 N -0.66 -6.56 5.33 -10.90 -0.06 -6.62 16 7 C 0.11 1.36 6.30 -83.65 -0.53 0.83 16 8 C -0.08 -1.30 8.69 -39.41 -0.34 -1.64 16 9 C -0.13 -2.19 9.33 -39.42 -0.37 -2.56 16 10 C 0.17 2.92 6.33 -83.65 -0.53 2.39 16 11 C -0.12 -1.61 5.66 -104.48 -0.59 -2.20 16 12 C -0.11 -1.26 9.60 -39.42 -0.38 -1.64 16 13 C -0.07 -0.83 5.99 -27.95 -0.17 -1.00 16 14 C -0.14 -1.78 6.07 -28.03 -0.17 -1.95 16 15 C 0.51 9.70 7.46 -11.18 -0.08 9.61 16 16 O -0.52 -11.94 16.61 5.55 0.09 -11.85 16 17 N -0.55 -10.64 2.69 -113.56 -0.31 -10.94 16 18 C 0.10 2.32 5.08 -4.04 -0.02 2.30 16 19 C 0.02 0.43 5.30 -27.89 -0.15 0.28 16 20 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 24 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.13 1.04 7.49 -52.49 -0.39 0.65 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.41 2.52 8.80 -40.82 -0.36 2.16 16 34 H 0.14 2.22 6.22 -52.48 -0.33 1.90 16 35 H 0.14 2.33 6.01 -52.49 -0.32 2.01 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.85 7.40 -51.93 -0.38 1.47 16 42 H 0.07 1.49 5.81 -51.93 -0.30 1.19 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -36.81 377.20 -9.26 -46.07 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.27 Total: 1.50 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.19 Total: -6.34 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.37 Total: -44.31 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.16 Total: -19.70 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.81 -9.26 -46.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787514725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.860 kcal (2) G-P(sol) polarization free energy of solvation -36.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds