Wall clock time and date at job start Tue Mar 31 2020 15:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33019 * 120.00142 * 2 1 4 4 C 1.47067 * 119.99893 * 179.72878 * 3 2 1 5 5 O 1.21633 * 119.99920 * 0.27345 * 4 3 2 6 6 N 1.34778 * 119.99642 * 180.27434 * 4 3 2 7 7 C 1.39985 * 119.99735 * 175.38535 * 6 4 3 8 8 C 1.38908 * 120.00136 * 35.10562 * 7 6 4 9 9 C 1.38023 * 120.01365 * 179.97438 * 8 7 6 10 10 C 1.38884 * 119.98831 * 0.02562 * 9 8 7 11 11 C 1.38879 * 119.99056 * 0.02562 * 10 9 8 12 12 C 1.38025 * 120.03632 * 359.70843 * 11 10 9 13 13 C 1.50667 * 119.83509 * 180.02562 * 11 10 9 14 14 C 1.52897 * 109.53821 * 326.02816 * 13 11 10 15 15 C 1.50500 * 109.90904 * 48.64830 * 14 13 11 16 16 O 1.21293 * 119.61933 * 144.75660 * 15 14 13 17 17 N 1.34558 * 120.75672 * 324.78016 * 15 14 13 18 18 C 1.46502 * 119.77259 * 180.81290 * 17 15 14 19 19 C 1.52995 * 109.47622 * 269.98078 * 18 17 15 20 20 C 1.50700 * 109.47289 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00247 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99888 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00128 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46989 * 89.99483 * 24 22 20 26 26 H 1.48496 * 109.47234 * 209.99921 * 24 22 20 27 27 H 1.48503 * 109.46814 * 330.00074 * 24 22 20 28 28 H 1.09002 * 109.47413 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47046 * 299.99840 * 1 2 3 30 30 H 1.09004 * 109.47525 * 59.99487 * 1 2 3 31 31 H 1.07997 * 119.99876 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.99598 * 0.02562 * 3 2 1 33 33 H 0.96998 * 120.00051 * 355.39029 * 6 4 3 34 34 H 1.08005 * 119.99634 * 0.02562 * 8 7 6 35 35 H 1.07995 * 120.00690 * 180.02562 * 9 8 7 36 36 H 1.08000 * 120.01651 * 180.31098 * 12 11 10 37 37 H 1.09000 * 109.46159 * 86.04548 * 13 11 10 38 38 H 1.09003 * 109.46136 * 206.02038 * 13 11 10 39 39 H 1.09004 * 109.40446 * 168.78491 * 14 13 11 40 40 H 1.09006 * 109.40154 * 288.51728 * 14 13 11 41 41 H 1.09007 * 109.47349 * 29.98592 * 18 17 15 42 42 H 1.09005 * 109.46926 * 149.97927 * 18 17 15 43 43 H 1.09004 * 109.46582 * 299.99907 * 19 18 17 44 44 H 1.08996 * 109.47122 * 59.99686 * 19 18 17 45 45 H 0.96998 * 120.00243 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1721 1.1520 0.0000 4 6 3.6427 1.1519 0.0060 5 8 4.2508 0.0985 0.0060 6 7 4.3166 2.3191 0.0116 7 6 5.7126 2.3208 0.1149 8 6 6.4548 1.3121 -0.4861 9 6 7.8313 1.3138 -0.3849 10 6 8.4743 2.3241 0.3185 11 6 7.7321 3.3319 0.9202 12 6 6.3559 3.3336 0.8145 13 6 8.4334 4.4265 1.6818 14 6 9.6783 3.8582 2.3639 15 6 10.4809 3.0536 1.3773 16 8 11.6920 3.0588 1.4440 17 7 9.8705 2.3290 0.4219 18 6 10.6723 1.5395 -0.5162 19 6 11.0140 2.3930 -1.7391 20 6 11.8383 1.5806 -2.7043 21 1 12.0934 0.5580 -2.4689 22 6 12.2676 2.1433 -3.8876 23 7 11.9575 3.3888 -4.1742 24 14 13.2900 1.1365 -5.0837 25 1 12.3907 0.4327 -6.0330 26 1 14.1989 2.0369 -5.8377 27 1 14.0931 0.1396 -4.3311 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.0469 -0.9353 -0.0004 32 1 1.6320 2.0873 0.0004 33 1 3.8342 3.1580 -0.0558 34 1 5.9547 0.5267 -1.0334 35 1 8.4082 0.5297 -0.8525 36 1 5.7794 4.1202 1.2783 37 1 8.7266 5.2183 0.9924 38 1 7.7598 4.8330 2.4363 39 1 10.2884 4.6773 2.7445 40 1 9.3765 3.2178 3.1928 41 1 11.5928 1.2196 -0.0277 42 1 10.1051 0.6636 -0.8314 43 1 10.0934 2.7127 -2.2276 44 1 11.5811 3.2688 -1.4240 45 1 12.2592 3.7845 -5.0068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787514725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:17 Heat of formation + Delta-G solvation = -57.211201 kcal Electronic energy + Delta-G solvation = -27105.207611 eV Core-core repulsion = 23279.466454 eV Total energy + Delta-G solvation = -3825.741157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23535 -41.21375 -39.46571 -37.27046 -36.26540 -35.33260 -34.94503 -34.77515 -32.02265 -30.96657 -30.12579 -28.35194 -27.28251 -25.45633 -24.36160 -24.02220 -22.67172 -21.99412 -20.47973 -20.02379 -18.99251 -18.76947 -18.37897 -17.87557 -17.28235 -16.93205 -16.48859 -16.17596 -15.85357 -15.79857 -15.30369 -15.08877 -14.85830 -14.54627 -14.39444 -14.30173 -14.25468 -14.10531 -13.95475 -13.59248 -13.30661 -13.26553 -12.92554 -12.83878 -12.70337 -12.51598 -12.31553 -12.17948 -12.12984 -11.84913 -11.59541 -11.49903 -10.99437 -10.88333 -10.64565 -10.40250 -10.22088 -9.78610 -8.54763 -8.27234 -6.41266 0.01797 0.33900 0.50463 1.35194 1.38318 1.48867 1.52846 1.85732 2.11552 2.26064 2.36805 2.79929 3.05202 3.41676 3.66368 3.73785 3.77350 4.03257 4.13760 4.16656 4.20450 4.31730 4.34394 4.34828 4.43394 4.55431 4.71186 4.75566 4.77426 4.81914 4.86089 4.89925 4.95968 5.03966 5.11591 5.19023 5.30014 5.34188 5.40209 5.45405 5.50292 5.56256 5.58365 5.73236 5.95477 6.08366 6.40027 6.51066 6.72395 6.97024 7.18594 7.28205 8.84672 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003010 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.359425 B = 9299.112322 C =11118.739155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.056 4.056 3 C -0.230 4.230 4 C 0.535 3.465 5 O -0.577 6.577 6 N -0.650 5.650 7 C 0.114 3.886 8 C -0.103 4.103 9 C -0.149 4.149 10 C 0.133 3.867 11 C -0.110 4.110 12 C -0.090 4.090 13 C -0.068 4.068 14 C -0.126 4.126 15 C 0.496 3.504 16 O -0.578 6.578 17 N -0.553 5.553 18 C 0.119 3.881 19 C 0.034 3.966 20 C -0.546 4.546 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.931 5.931 24 Si 0.973 3.027 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.166 0.834 33 H 0.431 0.569 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.180 0.820 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.064 0.936 42 H 0.086 0.914 43 H -0.006 1.006 44 H -0.021 1.021 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.258 1.616 13.493 30.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 C -0.250 4.250 4 C 0.328 3.672 5 O -0.458 6.458 6 N -0.296 5.296 7 C 0.019 3.981 8 C -0.124 4.124 9 C -0.170 4.170 10 C 0.038 3.962 11 C -0.113 4.113 12 C -0.110 4.110 13 C -0.104 4.104 14 C -0.165 4.165 15 C 0.288 3.712 16 O -0.457 6.457 17 N -0.274 5.274 18 C -0.002 4.002 19 C -0.004 4.004 20 C -0.585 4.585 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.184 0.816 33 H 0.271 0.729 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.197 0.803 37 H 0.097 0.903 38 H 0.158 0.842 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.012 0.988 44 H -0.003 1.003 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -26.148 1.031 13.438 29.417 hybrid contribution 1.123 -0.382 -1.278 1.743 sum -25.025 0.649 12.161 27.831 Atomic orbital electron populations 1.21072 0.89297 1.04266 1.04133 1.24007 0.98259 0.97708 0.87652 1.22562 0.90052 1.01704 1.10699 1.19452 0.90033 0.82833 0.74877 1.90799 1.71186 1.32917 1.50882 1.43201 1.03957 1.10404 1.72048 1.17680 0.83512 0.97538 0.99356 1.20999 0.92198 0.99841 0.99338 1.20827 0.94887 0.98778 1.02494 1.18064 0.81674 0.96422 0.99990 1.19639 0.93914 0.95825 1.01913 1.20831 0.92296 0.99475 0.98393 1.20517 0.95238 0.94901 0.99777 1.21773 0.97215 1.00779 0.96756 1.21891 0.88453 0.79049 0.81759 1.90699 1.16686 1.64528 1.73810 1.45827 1.05451 1.45729 1.30421 1.21679 0.94555 0.94432 0.89551 1.19073 0.94887 0.94472 0.91990 1.21486 1.33831 0.99285 1.03862 0.91702 1.26036 0.97339 0.96187 1.00141 1.70116 1.47056 1.14700 1.25214 0.85339 0.78417 0.78339 0.78313 1.19177 1.20477 1.18763 0.90722 0.88981 0.89196 0.87791 0.81622 0.72929 0.85514 0.86348 0.80300 0.90255 0.84205 0.85964 0.85775 0.91702 0.89548 0.98754 1.00272 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 10.18 71.23 0.73 0.08 16 2 C -0.06 -0.68 9.84 24.52 0.24 -0.43 16 3 C -0.23 -2.79 9.67 23.42 0.23 -2.56 16 4 C 0.54 11.17 7.61 86.56 0.66 11.83 16 5 O -0.58 -17.73 13.65 -4.13 -0.06 -17.78 16 6 N -0.65 -11.09 5.33 -306.64 -1.64 -12.73 16 7 C 0.11 2.74 6.30 38.15 0.24 2.98 16 8 C -0.10 -3.27 8.69 22.38 0.19 -3.08 16 9 C -0.15 -5.31 9.33 22.37 0.21 -5.10 16 10 C 0.13 4.66 6.33 38.14 0.24 4.90 16 11 C -0.11 -2.81 5.66 -19.77 -0.11 -2.92 16 12 C -0.09 -1.76 9.60 22.37 0.21 -1.55 16 13 C -0.07 -1.31 5.99 29.80 0.18 -1.13 16 14 C -0.13 -3.03 6.07 29.75 0.18 -2.85 16 15 C 0.50 19.47 7.46 87.63 0.65 20.13 16 16 O -0.58 -28.04 16.61 -3.07 -0.05 -28.09 16 17 N -0.55 -22.74 2.69 -631.71 -1.70 -24.44 16 18 C 0.12 5.73 5.08 86.38 0.44 6.16 16 19 C 0.03 1.96 5.30 29.85 0.16 2.12 16 20 C -0.55 -33.14 9.11 25.60 0.23 -32.91 16 21 H 0.06 3.74 7.74 -2.91 -0.02 3.71 16 22 C 0.00 0.07 5.46 84.65 0.46 0.53 16 23 N -0.93 -59.37 13.29 21.45 0.28 -59.08 16 24 Si 0.97 46.28 29.54 68.60 2.03 48.30 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 1.73 7.49 -2.91 -0.02 1.71 16 32 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 33 H 0.43 3.47 8.80 -92.71 -0.82 2.65 16 34 H 0.13 4.32 6.22 -2.91 -0.02 4.30 16 35 H 0.12 4.47 6.01 -2.91 -0.02 4.46 16 36 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.14 1.32 8.06 -2.39 -0.02 1.30 16 39 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.06 3.26 7.40 -2.38 -0.02 3.24 16 42 H 0.09 3.84 5.81 -2.38 -0.01 3.82 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 44 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 45 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -88.73 377.20 4.21 -84.52 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.20 Total: 13.10 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.14 Total: -3.79 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.05 Total: -96.26 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.11 Total: -45.87 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -88.73 4.21 -84.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787514725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.304 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds