Wall clock time and date at job start Tue Mar 31 2020 16:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 N 1.46499 * 109.47520 * 120.00217 * 2 1 3 5 5 C 1.34773 * 119.99971 * 85.00150 * 4 2 1 6 6 O 1.21285 * 119.99855 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00415 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47153 * 300.00724 * 7 5 4 9 9 C 1.47204 * 109.46776 * 59.99606 * 7 5 4 10 10 N 4.99253 * 84.37250 * 117.14689 * 2 1 3 11 11 C 1.50691 * 109.47659 * 179.97438 * 7 5 4 12 12 O 1.20763 * 119.99946 * 335.00418 * 11 7 5 13 13 C 1.50702 * 120.00168 * 154.99980 * 11 7 5 14 14 C 1.52999 * 109.47024 * 179.97438 * 13 11 7 15 15 H 1.08999 * 109.47681 * 305.36703 * 14 13 11 16 16 C 1.50706 * 109.47322 * 65.36934 * 14 13 11 17 17 H 1.07997 * 119.99634 * 34.61563 * 16 14 13 18 18 C 1.37876 * 120.00423 * 214.62029 * 16 14 13 19 19 N 1.31512 * 120.00250 * 186.44265 * 18 16 14 20 20 Si 1.86806 * 119.99634 * 6.44508 * 18 16 14 21 21 H 1.48499 * 109.46829 * 85.00801 * 20 18 16 22 22 H 1.48498 * 109.46869 * 205.00310 * 20 18 16 23 23 H 1.48501 * 109.47152 * 325.00566 * 20 18 16 24 24 C 1.50700 * 109.47317 * 185.36459 * 14 13 11 25 25 C 1.38228 * 120.00164 * 296.36715 * 24 14 13 26 26 C 1.38234 * 120.00290 * 179.78277 * 25 24 14 27 27 C 1.38244 * 119.99542 * 0.44303 * 26 25 24 28 28 C 1.38234 * 119.99983 * 359.80589 * 27 26 25 29 29 C 1.38233 * 119.99978 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47416 * 59.99959 * 1 2 3 31 31 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47211 * 299.99383 * 1 2 3 33 33 H 1.09000 * 109.47211 * 240.00616 * 2 1 3 34 34 H 1.09003 * 109.47163 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47104 * 300.00232 * 3 2 1 36 36 H 1.09000 * 109.46670 * 60.00285 * 3 2 1 37 37 H 0.97004 * 119.99918 * 265.00110 * 4 2 1 38 38 H 1.08998 * 109.47327 * 300.00152 * 13 11 7 39 39 H 1.08998 * 109.46866 * 60.00277 * 13 11 7 40 40 H 0.96995 * 120.00161 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.00204 * 359.97438 * 25 24 14 42 42 H 1.07997 * 120.00608 * 180.27613 * 26 25 24 43 43 H 1.07996 * 119.99630 * 179.83542 * 27 26 25 44 44 H 1.07999 * 119.99493 * 180.02562 * 28 27 26 45 45 H 1.07997 * 119.99791 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8592 -2.6676 0.2022 7 6 2.6502 -2.7427 2.4244 8 1 3.6495 -2.3825 2.6689 9 6 1.7424 -2.4741 3.5517 10 7 1.0404 -2.2670 4.4211 11 6 2.7002 -4.2259 2.1628 12 8 1.9809 -4.7160 1.3257 13 6 3.6480 -5.0975 2.9457 14 6 3.4998 -6.5503 2.4893 15 1 2.4557 -6.8522 2.5709 16 6 3.9480 -6.6748 1.0558 17 1 4.7637 -6.0685 0.6906 18 6 3.3167 -7.5625 0.2106 19 7 3.7864 -7.7642 -1.0011 20 14 1.7940 -8.4786 0.7867 21 1 0.5938 -7.6331 0.5637 22 1 1.6579 -9.7433 0.0204 23 1 1.9201 -8.7876 2.2337 24 6 4.3494 -7.4397 3.3601 25 6 5.7241 -7.2954 3.3623 26 6 6.5031 -8.1082 4.1645 27 6 5.9079 -9.0714 4.9575 28 6 4.5335 -9.2191 4.9514 29 6 3.7542 -8.4033 4.1526 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.2491 -0.1823 1.9894 38 1 4.6721 -4.7654 2.7752 39 1 3.4147 -5.0253 4.0080 40 1 3.3424 -8.3890 -1.5956 41 1 6.1895 -6.5456 2.7397 42 1 7.5769 -7.9925 4.1696 43 1 6.5167 -9.7082 5.5822 44 1 4.0685 -9.9714 5.5713 45 1 2.6804 -8.5184 4.1482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796632080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:52 Heat of formation + Delta-G solvation = -20.370234 kcal Electronic energy + Delta-G solvation = -27668.783124 eV Core-core repulsion = 23844.639512 eV Total energy + Delta-G solvation = -3824.143613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52895 -38.91925 -38.20249 -36.65029 -35.98266 -34.17406 -32.50016 -31.71109 -30.71003 -30.20800 -28.89315 -27.43809 -26.04343 -22.95586 -22.23851 -21.85244 -20.77883 -20.45465 -19.25653 -18.35475 -17.05921 -16.90995 -16.54748 -16.07836 -15.45991 -14.89239 -14.75656 -14.53215 -14.36165 -14.04516 -13.93356 -13.78895 -13.46128 -13.15556 -12.99142 -12.87994 -12.73411 -12.58425 -12.51467 -12.39988 -12.29276 -12.16423 -11.89975 -11.77484 -11.58522 -11.15811 -11.11516 -10.78782 -10.56284 -10.39088 -10.01880 -9.89216 -9.63429 -9.25721 -9.22603 -8.91208 -8.42473 -8.21262 -7.82682 -6.01344 -3.99615 2.09228 2.12388 2.17272 2.21455 2.55161 2.79068 3.00749 3.41769 3.45702 3.51844 3.81822 4.22619 4.46099 4.51362 4.56659 4.69198 4.83042 4.93643 5.03291 5.30967 5.34489 5.46280 5.51365 5.54629 5.55787 5.67198 5.69555 5.71721 5.87075 5.89560 5.93454 6.06231 6.09186 6.23318 6.30830 6.35200 6.58718 6.67457 6.81868 6.94744 7.13974 7.19905 7.25576 7.30634 7.53755 7.69403 7.79746 8.04464 8.18134 8.49139 8.98191 9.63317 11.11244 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003687 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.968040 B = 7591.694914 C = 8514.678883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.729 5.729 5 C 0.522 3.478 6 O -0.473 6.473 7 C -0.068 4.068 8 H 0.160 0.840 9 C 0.220 3.780 10 N -0.402 5.402 11 C 0.358 3.642 12 O -0.353 6.353 13 C -0.140 4.140 14 C 0.051 3.949 15 H 0.047 0.953 16 C -0.498 4.498 17 H 0.075 0.925 18 C 0.089 3.911 19 N -0.893 5.893 20 Si 0.866 3.134 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.260 1.260 24 C -0.038 4.038 25 C -0.101 4.101 26 C -0.127 4.127 27 C -0.149 4.149 28 C -0.126 4.126 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 14.669 8.426 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.384 5.384 5 C 0.304 3.696 6 O -0.343 6.343 7 C -0.094 4.094 8 H 0.178 0.822 9 C -0.099 4.099 10 N -0.079 5.079 11 C 0.222 3.778 12 O -0.215 6.215 13 C -0.178 4.178 14 C 0.032 3.968 15 H 0.065 0.935 16 C -0.534 4.534 17 H 0.093 0.907 18 C -0.114 4.114 19 N -0.529 5.529 20 Si 0.694 3.306 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.185 1.185 24 C -0.039 4.039 25 C -0.119 4.119 26 C -0.146 4.146 27 C -0.167 4.167 28 C -0.144 4.144 29 C -0.155 4.155 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.652 14.103 8.272 16.363 hybrid contribution -0.284 -0.387 0.268 0.550 sum -0.936 13.716 8.540 16.184 Atomic orbital electron populations 1.22201 0.95335 1.02976 1.01891 1.20964 0.94188 0.92756 0.88824 1.22072 1.01835 0.94953 1.02833 1.46099 1.68699 1.06551 1.17039 1.19595 0.79066 0.82389 0.88587 1.90940 1.45340 1.64882 1.33094 1.19844 0.99166 1.01787 0.88587 0.82240 1.27822 0.94036 0.94379 0.93654 1.81264 1.08690 1.07636 1.10314 1.23715 0.84394 0.85902 0.83756 1.90574 1.33614 1.73625 1.23736 1.22080 0.99569 0.97855 0.98312 1.18186 0.95423 0.87907 0.95313 0.93461 1.20604 1.18749 1.23327 0.90748 0.90722 1.24874 0.96398 0.95594 0.94559 1.69877 1.39889 1.35692 1.07466 0.87039 0.85137 0.79065 0.79406 1.19705 1.22051 1.18473 1.20685 0.94807 0.96274 0.92096 1.20952 0.93523 0.99709 0.97717 1.21054 0.99032 0.96741 0.97727 1.20867 0.94704 0.99825 1.01340 1.20964 0.94061 0.99519 0.99887 1.21155 0.99470 0.97292 0.97553 0.91572 0.91811 0.92673 0.88897 0.91766 0.90892 0.92197 0.76844 0.88546 0.90565 0.92716 0.86134 0.87169 0.87451 0.87419 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.31 3.18 -67.93 -0.22 1.09 16 3 C -0.16 -1.00 9.38 37.16 0.35 -0.65 16 4 N -0.73 -7.28 4.97 -53.80 -0.27 -7.55 16 5 C 0.52 7.36 7.04 -10.99 -0.08 7.28 16 6 O -0.47 -9.26 14.18 -18.21 -0.26 -9.52 16 7 C -0.07 -0.84 2.84 -95.71 -0.27 -1.11 16 8 H 0.16 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.22 2.81 14.39 -20.74 -0.30 2.51 16 10 N -0.40 -5.79 18.54 42.17 0.78 -5.01 16 11 C 0.36 6.29 5.89 -29.04 -0.17 6.12 16 12 O -0.35 -8.14 13.32 -17.77 -0.24 -8.38 16 13 C -0.14 -2.35 4.88 -27.88 -0.14 -2.49 16 14 C 0.05 1.10 1.29 -92.92 -0.12 0.98 16 15 H 0.05 1.10 4.79 -51.93 -0.25 0.85 16 16 C -0.50 -13.08 6.94 -34.44 -0.24 -13.32 16 17 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 18 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 19 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 20 Si 0.87 22.38 27.04 -169.99 -4.60 17.78 16 21 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.26 -6.21 5.15 56.52 0.29 -5.92 16 24 C -0.04 -0.77 4.77 -104.63 -0.50 -1.27 16 25 C -0.10 -1.88 8.87 -39.59 -0.35 -2.23 16 26 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 27 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 29 C -0.14 -2.64 9.13 -39.58 -0.36 -3.00 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 2.76 8.47 -40.82 -0.35 2.42 16 38 H 0.10 1.40 7.80 -51.93 -0.41 1.00 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 41 H 0.12 2.16 7.77 -52.48 -0.41 1.75 16 42 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 45 H 0.11 2.13 6.96 -52.49 -0.37 1.77 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -35.87 384.11 -7.83 -43.70 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.49 Total: 2.57 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.33 Total: -12.71 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 1.29 Total: -39.23 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.49 Total: -17.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.60 Total: 17.78 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.87 -7.83 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796632080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds