Wall clock time and date at job start Tue Mar 31 2020 16:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 N 1.46499 * 109.47520 * 120.00217 * 2 1 3 5 5 C 1.34773 * 119.99971 * 85.00150 * 4 2 1 6 6 O 1.21285 * 119.99855 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00415 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.47153 * 300.00724 * 7 5 4 9 9 C 1.47204 * 109.46776 * 59.99606 * 7 5 4 10 10 N 4.99253 * 84.37250 * 117.14689 * 2 1 3 11 11 C 1.50691 * 109.47659 * 179.97438 * 7 5 4 12 12 O 1.20763 * 119.99946 * 335.00418 * 11 7 5 13 13 C 1.50702 * 120.00168 * 154.99980 * 11 7 5 14 14 C 1.52999 * 109.47024 * 179.97438 * 13 11 7 15 15 H 1.08999 * 109.47681 * 305.36703 * 14 13 11 16 16 C 1.50706 * 109.47322 * 65.36934 * 14 13 11 17 17 H 1.07997 * 119.99634 * 34.61563 * 16 14 13 18 18 C 1.37876 * 120.00423 * 214.62029 * 16 14 13 19 19 N 1.31512 * 120.00250 * 186.44265 * 18 16 14 20 20 Si 1.86806 * 119.99634 * 6.44508 * 18 16 14 21 21 H 1.48499 * 109.46829 * 85.00801 * 20 18 16 22 22 H 1.48498 * 109.46869 * 205.00310 * 20 18 16 23 23 H 1.48501 * 109.47152 * 325.00566 * 20 18 16 24 24 C 1.50700 * 109.47317 * 185.36459 * 14 13 11 25 25 C 1.38228 * 120.00164 * 296.36715 * 24 14 13 26 26 C 1.38234 * 120.00290 * 179.78277 * 25 24 14 27 27 C 1.38244 * 119.99542 * 0.44303 * 26 25 24 28 28 C 1.38234 * 119.99983 * 359.80589 * 27 26 25 29 29 C 1.38233 * 119.99978 * 359.97438 * 28 27 26 30 30 H 1.08997 * 109.47416 * 59.99959 * 1 2 3 31 31 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47211 * 299.99383 * 1 2 3 33 33 H 1.09000 * 109.47211 * 240.00616 * 2 1 3 34 34 H 1.09003 * 109.47163 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47104 * 300.00232 * 3 2 1 36 36 H 1.09000 * 109.46670 * 60.00285 * 3 2 1 37 37 H 0.97004 * 119.99918 * 265.00110 * 4 2 1 38 38 H 1.08998 * 109.47327 * 300.00152 * 13 11 7 39 39 H 1.08998 * 109.46866 * 60.00277 * 13 11 7 40 40 H 0.96995 * 120.00161 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.00204 * 359.97438 * 25 24 14 42 42 H 1.07997 * 120.00608 * 180.27613 * 26 25 24 43 43 H 1.07996 * 119.99630 * 179.83542 * 27 26 25 44 44 H 1.07999 * 119.99493 * 180.02562 * 28 27 26 45 45 H 1.07997 * 119.99791 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1942 6 8 1.8592 -2.6676 0.2022 7 6 2.6502 -2.7427 2.4244 8 1 3.6495 -2.3825 2.6689 9 6 1.7424 -2.4741 3.5517 10 7 1.0404 -2.2670 4.4211 11 6 2.7002 -4.2259 2.1628 12 8 1.9809 -4.7160 1.3257 13 6 3.6480 -5.0975 2.9457 14 6 3.4998 -6.5503 2.4893 15 1 2.4557 -6.8522 2.5709 16 6 3.9480 -6.6748 1.0558 17 1 4.7637 -6.0685 0.6906 18 6 3.3167 -7.5625 0.2106 19 7 3.7864 -7.7642 -1.0011 20 14 1.7940 -8.4786 0.7867 21 1 0.5938 -7.6331 0.5637 22 1 1.6579 -9.7433 0.0204 23 1 1.9201 -8.7876 2.2337 24 6 4.3494 -7.4397 3.3601 25 6 5.7241 -7.2954 3.3623 26 6 6.5031 -8.1082 4.1645 27 6 5.9079 -9.0714 4.9575 28 6 4.5335 -9.2191 4.9514 29 6 3.7542 -8.4033 4.1526 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 2.2491 -0.1823 1.9894 38 1 4.6721 -4.7654 2.7752 39 1 3.4147 -5.0253 4.0080 40 1 3.3424 -8.3890 -1.5956 41 1 6.1895 -6.5456 2.7397 42 1 7.5769 -7.9925 4.1696 43 1 6.5167 -9.7082 5.5822 44 1 4.0685 -9.9714 5.5713 45 1 2.6804 -8.5184 4.1482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796632080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:50 Heat of formation + Delta-G solvation = -43.046175 kcal Electronic energy + Delta-G solvation = -27669.766427 eV Core-core repulsion = 23844.639512 eV Total energy + Delta-G solvation = -3825.126915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.75316 -40.28287 -39.54321 -37.78795 -36.98022 -35.85786 -33.82363 -33.47511 -31.78010 -31.55059 -30.23245 -28.10901 -27.83059 -24.54638 -23.39057 -23.11852 -21.81457 -21.71548 -20.72515 -19.52589 -18.98662 -18.08355 -17.78284 -17.26706 -16.72740 -16.38548 -16.07292 -15.89712 -15.58232 -15.32636 -15.18239 -15.05147 -14.84539 -14.66956 -14.25917 -14.12245 -14.01465 -13.80854 -13.79465 -13.50796 -13.40740 -13.21150 -13.13392 -13.06776 -12.86142 -12.69421 -12.30336 -12.06494 -11.92981 -11.88362 -11.78157 -11.46820 -11.19821 -11.04987 -10.60655 -10.32840 -10.19629 -9.58203 -9.25938 -8.21767 -6.17116 0.72061 0.76764 0.91386 1.13401 1.29364 1.37314 1.38092 1.45151 1.61902 2.04271 2.40310 2.72105 2.99269 3.10874 3.28186 3.52121 3.94581 4.06176 4.14280 4.15415 4.27903 4.31952 4.32140 4.38093 4.48295 4.56076 4.69728 4.71556 4.74018 4.90334 4.91263 4.93444 5.01875 5.17781 5.23708 5.24973 5.32949 5.40302 5.44812 5.48524 5.70028 5.80700 5.86082 6.05781 6.15043 6.36068 6.39898 6.41678 6.74702 6.85035 7.15604 7.47382 8.94801 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.003687 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.968040 B = 7591.694914 C = 8514.678883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 C -0.149 4.149 4 N -0.707 5.707 5 C 0.519 3.481 6 O -0.538 6.538 7 C -0.053 4.053 8 H 0.222 0.778 9 C 0.240 3.760 10 N -0.423 5.423 11 C 0.357 3.643 12 O -0.419 6.419 13 C -0.140 4.140 14 C 0.047 3.953 15 H 0.026 0.974 16 C -0.466 4.466 17 H 0.048 0.952 18 C 0.029 3.971 19 N -0.947 5.947 20 Si 0.908 3.092 21 H -0.291 1.291 22 H -0.299 1.299 23 H -0.231 1.231 24 C -0.061 4.061 25 C -0.115 4.115 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.127 4.127 29 C -0.157 4.157 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.417 0.583 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.257 0.743 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 16.184 12.124 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.027 3.973 3 C -0.206 4.206 4 N -0.362 5.362 5 C 0.302 3.698 6 O -0.412 6.412 7 C -0.078 4.078 8 H 0.238 0.762 9 C -0.078 4.078 10 N -0.100 5.100 11 C 0.225 3.775 12 O -0.286 6.286 13 C -0.177 4.177 14 C 0.028 3.972 15 H 0.045 0.955 16 C -0.504 4.504 17 H 0.066 0.934 18 C -0.168 4.168 19 N -0.589 5.589 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.226 1.226 23 H -0.154 1.154 24 C -0.061 4.061 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.160 4.160 28 C -0.145 4.145 29 C -0.175 4.175 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.254 0.746 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.153 0.847 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.131 15.679 12.069 19.818 hybrid contribution -0.756 -0.775 -0.766 1.326 sum 0.376 14.904 11.304 18.709 Atomic orbital electron populations 1.22176 0.95566 1.00881 1.03449 1.21084 0.94043 0.94590 0.87593 1.22011 1.02221 0.92144 1.04238 1.45983 1.66876 1.05337 1.17986 1.19887 0.78357 0.83387 0.88197 1.90937 1.48371 1.66416 1.35494 1.19736 1.02221 0.98098 0.87713 0.76162 1.27620 0.93364 0.93775 0.93062 1.81303 1.09174 1.08216 1.11288 1.24312 0.82783 0.88314 0.82052 1.90583 1.36178 1.75389 1.26460 1.22108 1.01014 0.94549 1.00069 1.18115 0.94397 0.91684 0.92985 0.95528 1.20870 1.16127 1.20256 0.93123 0.93409 1.25519 0.98897 0.97508 0.94877 1.70006 1.41856 1.38021 1.08993 0.86356 0.81964 0.77495 0.80652 1.21784 1.22616 1.15377 1.20454 0.95353 0.96785 0.93529 1.21056 0.93034 1.00666 0.98526 1.21423 1.00524 0.95812 0.96483 1.21327 0.94622 0.99337 1.00676 1.21299 0.94655 0.99280 0.99285 1.21247 0.99570 0.97935 0.98755 0.89966 0.95635 0.91197 0.91593 0.91059 0.89846 0.90427 0.74551 0.85857 0.86927 0.93401 0.86233 0.84115 0.83833 0.84729 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.48 71.98 0.68 -2.49 16 2 C 0.13 2.42 3.18 44.99 0.14 2.56 16 3 C -0.15 -1.48 9.38 71.98 0.68 -0.81 16 4 N -0.71 -13.12 4.97 -442.53 -2.20 -15.32 16 5 C 0.52 14.51 7.04 87.66 0.62 15.13 16 6 O -0.54 -22.27 14.18 19.68 0.28 -21.99 16 7 C -0.05 -1.20 2.84 -14.09 -0.04 -1.24 16 8 H 0.22 2.18 8.14 -2.39 -0.02 2.16 16 9 C 0.24 5.59 14.39 89.44 1.29 6.88 16 10 N -0.42 -11.30 18.54 20.01 0.37 -10.93 16 11 C 0.36 12.42 5.89 29.10 0.17 12.60 16 12 O -0.42 -20.20 13.32 21.26 0.28 -19.92 16 13 C -0.14 -4.47 4.88 29.85 0.15 -4.32 16 14 C 0.05 2.05 1.29 -12.28 -0.02 2.03 16 15 H 0.03 1.26 4.79 -2.39 -0.01 1.24 16 16 C -0.47 -25.30 6.94 25.60 0.18 -25.13 16 17 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 18 C 0.03 1.73 5.47 84.65 0.46 2.20 16 19 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 20 Si 0.91 48.21 27.04 68.60 1.85 50.06 16 21 H -0.29 -16.19 7.11 99.48 0.71 -15.49 16 22 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 23 H -0.23 -10.95 5.15 99.48 0.51 -10.44 16 24 C -0.06 -2.38 4.77 -19.87 -0.09 -2.47 16 25 C -0.11 -4.02 8.87 22.27 0.20 -3.82 16 26 C -0.12 -3.62 10.05 22.27 0.22 -3.40 16 27 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 28 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 29 C -0.16 -5.78 9.13 22.27 0.20 -5.58 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.42 4.50 8.47 -92.71 -0.79 3.71 16 38 H 0.12 3.27 7.80 -2.39 -0.02 3.25 16 39 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 41 H 0.12 4.10 7.77 -2.91 -0.02 4.08 16 42 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.10 3.87 6.96 -2.91 -0.02 3.85 16 Total: -1.00 -86.77 384.11 6.20 -80.56 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.03 Total: 13.94 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.28 Total: -15.15 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -1.53 Total: -87.50 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: 0.56 Total: -41.91 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.85 Total: 50.06 kcal Total: -86.77 6.20 -80.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796632080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.518 kcal (2) G-P(sol) polarization free energy of solvation -86.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds