Wall clock time and date at job start Tue Mar 31 2020 16:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 N 1.46505 * 109.46764 * 119.99864 * 2 1 3 5 5 C 1.34775 * 119.99833 * 85.00541 * 4 2 1 6 6 O 1.21276 * 120.00367 * 359.71494 * 5 4 2 7 7 C 1.50699 * 119.99857 * 179.97438 * 5 4 2 8 8 H 1.09005 * 109.47197 * 299.72338 * 7 5 4 9 9 C 1.47201 * 109.47136 * 59.71625 * 7 5 4 10 10 N 4.99019 * 84.43992 * 117.02887 * 2 1 3 11 11 C 1.50696 * 109.47198 * 179.72032 * 7 5 4 12 12 O 1.20756 * 120.00020 * 335.00071 * 11 7 5 13 13 C 1.50701 * 119.99898 * 154.99884 * 11 7 5 14 14 C 1.52995 * 109.47002 * 179.97438 * 13 11 7 15 15 H 1.08999 * 109.47179 * 55.00280 * 14 13 11 16 16 C 1.50700 * 109.47396 * 294.99735 * 14 13 11 17 17 H 1.07998 * 119.99651 * 325.84077 * 16 14 13 18 18 C 1.37879 * 120.00059 * 145.83596 * 16 14 13 19 19 N 1.31520 * 119.99702 * 6.12401 * 18 16 14 20 20 Si 1.86797 * 120.00136 * 186.11739 * 18 16 14 21 21 H 1.48500 * 109.47026 * 90.00005 * 20 18 16 22 22 H 1.48501 * 109.47251 * 210.00286 * 20 18 16 23 23 H 1.48498 * 109.46912 * 330.00535 * 20 18 16 24 24 C 1.50707 * 109.47205 * 175.00117 * 14 13 11 25 25 C 1.38233 * 119.99994 * 63.45494 * 24 14 13 26 26 C 1.38234 * 119.99832 * 179.81181 * 25 24 14 27 27 C 1.38235 * 120.00043 * 0.40217 * 26 25 24 28 28 C 1.38235 * 119.99982 * 359.85225 * 27 26 25 29 29 C 1.38232 * 119.99922 * 359.95859 * 28 27 26 30 30 H 1.09003 * 109.47044 * 60.00362 * 1 2 3 31 31 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46944 * 299.99765 * 1 2 3 33 33 H 1.08999 * 109.47007 * 239.99478 * 2 1 3 34 34 H 1.08998 * 109.47325 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46620 * 300.00278 * 3 2 1 36 36 H 1.08997 * 109.46909 * 59.99483 * 3 2 1 37 37 H 0.96999 * 119.99493 * 264.99880 * 4 2 1 38 38 H 1.08999 * 109.47091 * 300.00014 * 13 11 7 39 39 H 1.08997 * 109.47193 * 60.00220 * 13 11 7 40 40 H 0.97004 * 119.99588 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.00162 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.99947 * 180.23263 * 26 25 24 43 43 H 1.08002 * 120.00029 * 179.83869 * 27 26 25 44 44 H 1.08002 * 119.99760 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.99910 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -2.0322 1.1944 6 8 1.8539 -2.6682 0.2043 7 6 2.6499 -2.7425 2.4247 8 1 3.6512 -2.3860 2.6665 9 6 1.7457 -2.4684 3.5535 10 7 1.0466 -2.2571 4.4242 11 6 2.6941 -4.2263 2.1653 12 8 1.9713 -4.7151 1.3304 13 6 3.6402 -5.1002 2.9477 14 6 3.4859 -6.5531 2.4938 15 1 3.6296 -6.6140 1.4150 16 6 2.1057 -7.0454 2.8454 17 1 1.6207 -6.6961 3.7449 18 6 1.4620 -7.9417 2.0186 19 7 2.0963 -8.4593 0.9893 20 14 -0.3108 -8.4208 2.3606 21 1 -1.2216 -7.4897 1.6474 22 1 -0.5492 -9.8074 1.8854 23 1 -0.5708 -8.3463 3.8207 24 6 4.5157 -7.4080 3.1867 25 6 4.4873 -7.5461 4.5618 26 6 5.4295 -8.3333 5.1969 27 6 6.4050 -8.9758 4.4578 28 6 6.4366 -8.8335 3.0831 29 6 5.4920 -8.0494 2.4476 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.2490 -0.1822 1.9895 38 1 4.6651 -4.7720 2.7746 39 1 3.4093 -5.0255 4.0103 40 1 1.6436 -9.0901 0.4079 41 1 3.7270 -7.0416 5.1396 42 1 5.4051 -8.4442 6.2710 43 1 7.1427 -9.5888 4.9543 44 1 7.1990 -9.3352 2.5057 45 1 5.5169 -7.9379 1.3737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796632082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:59 Heat of formation + Delta-G solvation = -23.696735 kcal Electronic energy + Delta-G solvation = -27579.224038 eV Core-core repulsion = 23754.936177 eV Total energy + Delta-G solvation = -3824.287861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.49596 -38.75182 -38.05100 -36.52481 -35.99920 -34.04887 -32.47260 -31.53029 -30.61952 -30.00520 -28.70978 -27.45562 -25.67251 -23.13025 -22.18003 -21.62599 -20.79860 -20.34174 -19.29759 -18.32095 -16.98994 -16.54471 -16.41425 -15.97973 -15.31803 -14.89231 -14.67689 -14.43988 -14.15788 -14.00761 -13.93911 -13.76962 -13.49260 -13.13609 -12.86714 -12.81807 -12.59521 -12.54215 -12.38314 -12.23396 -12.13709 -11.98919 -11.68070 -11.61720 -11.60469 -11.18112 -10.88449 -10.74592 -10.57565 -10.26565 -10.09835 -10.00018 -9.47606 -9.25851 -9.12355 -8.83657 -8.36047 -8.04398 -7.61200 -5.97910 -3.99272 2.22097 2.28297 2.29322 2.34227 2.65020 2.88911 3.03875 3.37979 3.43732 3.46292 3.91079 4.33216 4.46940 4.49740 4.68089 4.75158 4.80576 4.95050 5.00470 5.32853 5.38027 5.44333 5.54479 5.66529 5.67090 5.72627 5.81812 5.83710 5.89634 6.05395 6.09006 6.10998 6.27766 6.32858 6.41636 6.52815 6.80978 6.90669 7.04357 7.27238 7.31411 7.34434 7.41864 7.51226 7.82174 7.93645 8.02131 8.06694 8.25374 8.34430 9.02331 9.64630 11.11668 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.003658 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.566750 B = 7651.762359 C = 8656.247577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 C -0.159 4.159 4 N -0.729 5.729 5 C 0.525 3.475 6 O -0.481 6.481 7 C -0.069 4.069 8 H 0.158 0.842 9 C 0.219 3.781 10 N -0.401 5.401 11 C 0.356 3.644 12 O -0.347 6.347 13 C -0.145 4.145 14 C 0.075 3.925 15 H 0.074 0.926 16 C -0.504 4.504 17 H 0.051 0.949 18 C 0.082 3.918 19 N -0.877 5.877 20 Si 0.882 3.118 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.020 4.020 25 C -0.115 4.115 26 C -0.132 4.132 27 C -0.155 4.155 28 C -0.128 4.128 29 C -0.118 4.118 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.398 0.602 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.261 0.739 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 16.366 1.381 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.033 3.967 3 C -0.217 4.217 4 N -0.383 5.383 5 C 0.306 3.694 6 O -0.351 6.351 7 C -0.095 4.095 8 H 0.175 0.825 9 C -0.099 4.099 10 N -0.077 5.077 11 C 0.219 3.781 12 O -0.209 6.209 13 C -0.183 4.183 14 C 0.056 3.944 15 H 0.092 0.908 16 C -0.542 4.542 17 H 0.070 0.930 18 C -0.123 4.123 19 N -0.513 5.513 20 Si 0.710 3.290 21 H -0.205 1.205 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.021 4.021 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.173 4.173 28 C -0.146 4.146 29 C -0.136 4.136 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.936 15.775 1.264 16.578 hybrid contribution -0.631 -0.222 0.447 0.804 sum 4.305 15.554 1.711 16.229 Atomic orbital electron populations 1.22209 0.95278 1.03079 1.01925 1.20960 0.94264 0.92719 0.88746 1.22074 1.01760 0.94985 1.02893 1.46119 1.68555 1.06617 1.17048 1.19650 0.78792 0.82317 0.88598 1.90894 1.45711 1.64948 1.33527 1.19890 0.99035 1.02075 0.88474 0.82492 1.27748 0.94120 0.94358 0.93716 1.81253 1.08464 1.07765 1.10234 1.23756 0.84713 0.85486 0.84122 1.90594 1.32735 1.73025 1.24525 1.22182 0.97234 0.98734 1.00138 1.17901 0.92734 0.85728 0.98047 0.90811 1.20736 0.98716 1.26596 1.08126 0.93042 1.24804 0.97267 0.95440 0.94745 1.69904 1.36353 1.29239 1.15812 0.86749 0.86118 0.77635 0.78462 1.20506 1.21303 1.20030 1.20679 0.92210 0.96180 0.93029 1.20947 0.97859 0.99541 0.95002 1.20974 0.96393 0.98895 0.98716 1.20798 0.99953 1.02287 0.94293 1.20985 0.99359 0.99796 0.94480 1.21089 0.94731 0.98157 0.99668 0.91593 0.91730 0.92607 0.89013 0.91811 0.90895 0.92144 0.76761 0.90446 0.89821 0.92952 0.86931 0.87701 0.87831 0.87639 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.48 37.16 0.35 -1.28 16 2 C 0.14 1.26 3.18 -67.92 -0.22 1.04 16 3 C -0.16 -0.94 9.38 37.16 0.35 -0.59 16 4 N -0.73 -7.13 4.97 -53.80 -0.27 -7.40 16 5 C 0.52 7.25 7.05 -10.99 -0.08 7.17 16 6 O -0.48 -9.03 14.18 -18.20 -0.26 -9.29 16 7 C -0.07 -0.87 2.84 -95.71 -0.27 -1.15 16 8 H 0.16 1.13 8.14 -51.93 -0.42 0.71 16 9 C 0.22 3.06 14.38 -20.74 -0.30 2.77 16 10 N -0.40 -6.35 18.54 42.17 0.78 -5.57 16 11 C 0.36 6.41 5.89 -29.04 -0.17 6.24 16 12 O -0.35 -8.16 13.31 -17.76 -0.24 -8.40 16 13 C -0.15 -2.54 4.88 -27.88 -0.14 -2.68 16 14 C 0.07 1.70 1.67 -92.92 -0.16 1.54 16 15 H 0.07 1.92 6.98 -51.93 -0.36 1.56 16 16 C -0.50 -13.22 6.37 -34.44 -0.22 -13.44 16 17 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 18 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 19 N -0.88 -25.38 12.87 55.43 0.71 -24.67 16 20 Si 0.88 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.02 -0.44 4.77 -104.62 -0.50 -0.93 16 25 C -0.12 -2.27 8.86 -39.58 -0.35 -2.62 16 26 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 27 C -0.16 -2.64 10.05 -39.58 -0.40 -3.04 16 28 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 29 C -0.12 -2.42 9.67 -39.58 -0.38 -2.80 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.40 2.76 8.46 -40.82 -0.35 2.41 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.37 7.77 -51.93 -0.40 0.97 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.11 2.15 7.76 -52.49 -0.41 1.74 16 42 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 43 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.11 2.34 7.95 -52.49 -0.42 1.93 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -34.62 390.71 -8.29 -42.91 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.53 Total: 2.24 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.37 Total: -13.02 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 1.23 Total: -37.63 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.49 Total: -17.69 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.62 -8.29 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796632082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.218 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds