Wall clock time and date at job start Tue Mar 31 2020 16:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 N 1.46505 * 109.46764 * 119.99864 * 2 1 3 5 5 C 1.34775 * 119.99833 * 85.00541 * 4 2 1 6 6 O 1.21276 * 120.00367 * 359.71494 * 5 4 2 7 7 C 1.50699 * 119.99857 * 179.97438 * 5 4 2 8 8 H 1.09005 * 109.47197 * 299.72338 * 7 5 4 9 9 C 1.47201 * 109.47136 * 59.71625 * 7 5 4 10 10 N 4.99019 * 84.43992 * 117.02887 * 2 1 3 11 11 C 1.50696 * 109.47198 * 179.72032 * 7 5 4 12 12 O 1.20756 * 120.00020 * 335.00071 * 11 7 5 13 13 C 1.50701 * 119.99898 * 154.99884 * 11 7 5 14 14 C 1.52995 * 109.47002 * 179.97438 * 13 11 7 15 15 H 1.08999 * 109.47179 * 55.00280 * 14 13 11 16 16 C 1.50700 * 109.47396 * 294.99735 * 14 13 11 17 17 H 1.07998 * 119.99651 * 325.84077 * 16 14 13 18 18 C 1.37879 * 120.00059 * 145.83596 * 16 14 13 19 19 N 1.31520 * 119.99702 * 6.12401 * 18 16 14 20 20 Si 1.86797 * 120.00136 * 186.11739 * 18 16 14 21 21 H 1.48500 * 109.47026 * 90.00005 * 20 18 16 22 22 H 1.48501 * 109.47251 * 210.00286 * 20 18 16 23 23 H 1.48498 * 109.46912 * 330.00535 * 20 18 16 24 24 C 1.50707 * 109.47205 * 175.00117 * 14 13 11 25 25 C 1.38233 * 119.99994 * 63.45494 * 24 14 13 26 26 C 1.38234 * 119.99832 * 179.81181 * 25 24 14 27 27 C 1.38235 * 120.00043 * 0.40217 * 26 25 24 28 28 C 1.38235 * 119.99982 * 359.85225 * 27 26 25 29 29 C 1.38232 * 119.99922 * 359.95859 * 28 27 26 30 30 H 1.09003 * 109.47044 * 60.00362 * 1 2 3 31 31 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46944 * 299.99765 * 1 2 3 33 33 H 1.08999 * 109.47007 * 239.99478 * 2 1 3 34 34 H 1.08998 * 109.47325 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46620 * 300.00278 * 3 2 1 36 36 H 1.08997 * 109.46909 * 59.99483 * 3 2 1 37 37 H 0.96999 * 119.99493 * 264.99880 * 4 2 1 38 38 H 1.08999 * 109.47091 * 300.00014 * 13 11 7 39 39 H 1.08997 * 109.47193 * 60.00220 * 13 11 7 40 40 H 0.97004 * 119.99588 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.00162 * 0.02562 * 25 24 14 42 42 H 1.08000 * 119.99947 * 180.23263 * 26 25 24 43 43 H 1.08002 * 120.00029 * 179.83869 * 27 26 25 44 44 H 1.08002 * 119.99760 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.99910 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -2.0322 1.1944 6 8 1.8539 -2.6682 0.2043 7 6 2.6499 -2.7425 2.4247 8 1 3.6512 -2.3860 2.6665 9 6 1.7457 -2.4684 3.5535 10 7 1.0466 -2.2571 4.4242 11 6 2.6941 -4.2263 2.1653 12 8 1.9713 -4.7151 1.3304 13 6 3.6402 -5.1002 2.9477 14 6 3.4859 -6.5531 2.4938 15 1 3.6296 -6.6140 1.4150 16 6 2.1057 -7.0454 2.8454 17 1 1.6207 -6.6961 3.7449 18 6 1.4620 -7.9417 2.0186 19 7 2.0963 -8.4593 0.9893 20 14 -0.3108 -8.4208 2.3606 21 1 -1.2216 -7.4897 1.6474 22 1 -0.5492 -9.8074 1.8854 23 1 -0.5708 -8.3463 3.8207 24 6 4.5157 -7.4080 3.1867 25 6 4.4873 -7.5461 4.5618 26 6 5.4295 -8.3333 5.1969 27 6 6.4050 -8.9758 4.4578 28 6 6.4366 -8.8335 3.0831 29 6 5.4920 -8.0494 2.4476 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.2490 -0.1822 1.9895 38 1 4.6651 -4.7720 2.7746 39 1 3.4093 -5.0255 4.0103 40 1 1.6436 -9.0901 0.4079 41 1 3.7270 -7.0416 5.1396 42 1 5.4051 -8.4442 6.2710 43 1 7.1427 -9.5888 4.9543 44 1 7.1990 -9.3352 2.5057 45 1 5.5169 -7.9379 1.3737 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796632082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:57 Heat of formation + Delta-G solvation = -44.131063 kcal Electronic energy + Delta-G solvation = -27580.110137 eV Core-core repulsion = 23754.936177 eV Total energy + Delta-G solvation = -3825.173960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.70856 -40.15961 -39.45522 -37.75186 -36.96801 -35.79677 -33.69648 -33.29165 -31.71079 -31.45279 -30.11847 -28.10324 -27.52367 -24.74811 -23.26106 -23.04339 -21.78824 -21.70218 -20.78817 -19.52202 -18.42152 -18.08185 -17.71686 -17.22334 -16.60628 -16.51876 -15.90263 -15.72401 -15.57823 -15.50686 -15.14845 -15.02738 -14.81698 -14.44122 -14.09332 -13.96380 -13.92930 -13.74865 -13.57870 -13.48992 -13.31461 -13.14985 -13.08927 -13.06401 -12.90223 -12.53072 -12.44862 -12.29510 -11.92555 -11.79763 -11.67377 -11.30733 -11.17135 -10.94342 -10.57817 -10.20518 -10.17943 -9.50093 -9.14605 -8.08139 -6.10623 0.81988 0.87896 0.96094 1.14043 1.30865 1.36449 1.39510 1.51287 1.66221 2.05747 2.42076 2.76813 3.06445 3.20138 3.35982 3.53993 3.95588 4.06808 4.15066 4.29327 4.32494 4.37730 4.42100 4.47351 4.60367 4.69957 4.70308 4.74425 4.83571 4.94403 4.97923 5.01989 5.05854 5.25698 5.32567 5.34061 5.41707 5.48898 5.56649 5.64960 5.78867 5.88078 5.99197 6.17679 6.19510 6.41580 6.43632 6.49987 6.84198 7.00326 7.14714 7.53452 9.00848 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.003658 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.566750 B = 7651.762359 C = 8656.247577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 C -0.149 4.149 4 N -0.708 5.708 5 C 0.523 3.477 6 O -0.539 6.539 7 C -0.054 4.054 8 H 0.224 0.776 9 C 0.238 3.762 10 N -0.429 5.429 11 C 0.357 3.643 12 O -0.413 6.413 13 C -0.144 4.144 14 C 0.074 3.926 15 H 0.029 0.971 16 C -0.493 4.493 17 H 0.045 0.955 18 C 0.030 3.970 19 N -0.910 5.910 20 Si 0.921 3.079 21 H -0.292 1.292 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.042 4.042 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.148 4.148 28 C -0.128 4.128 29 C -0.141 4.141 30 H 0.083 0.917 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.119 0.881 39 H 0.102 0.898 40 H 0.254 0.746 41 H 0.114 0.886 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.843 18.189 4.050 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 C -0.206 4.206 4 N -0.362 5.362 5 C 0.305 3.695 6 O -0.413 6.413 7 C -0.079 4.079 8 H 0.240 0.760 9 C -0.080 4.080 10 N -0.105 5.105 11 C 0.224 3.776 12 O -0.280 6.280 13 C -0.181 4.181 14 C 0.056 3.944 15 H 0.048 0.952 16 C -0.531 4.531 17 H 0.064 0.936 18 C -0.169 4.169 19 N -0.550 5.550 20 Si 0.749 3.251 21 H -0.219 1.219 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.043 4.043 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.166 4.166 28 C -0.146 4.146 29 C -0.159 4.159 30 H 0.102 0.898 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.137 0.863 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.125 17.659 4.002 19.458 hybrid contribution -1.228 -0.741 -0.343 1.474 sum 5.897 16.918 3.659 18.286 Atomic orbital electron populations 1.22195 0.95854 1.00830 1.03386 1.21093 0.93825 0.94625 0.87634 1.22012 1.02313 0.92137 1.04171 1.46008 1.66773 1.05370 1.18039 1.19829 0.78245 0.83330 0.88068 1.90893 1.48423 1.66364 1.35653 1.19823 1.02207 0.98256 0.87606 0.75973 1.27750 0.93439 0.93594 0.93217 1.81283 1.09234 1.08576 1.11446 1.24278 0.83025 0.87919 0.82331 1.90601 1.35176 1.74919 1.27266 1.22167 0.99665 0.95554 1.00755 1.17721 0.91595 0.89339 0.95793 0.95224 1.21052 1.00378 1.24740 1.06909 0.93637 1.25389 0.99744 0.96503 0.95294 1.70021 1.37168 1.30698 1.17079 0.86125 0.83303 0.77108 0.78557 1.21944 1.20951 1.18934 1.20509 0.92800 0.96942 0.94015 1.21027 0.98819 1.00576 0.94171 1.21349 0.95302 0.97442 1.00467 1.21243 1.00086 1.01496 0.93777 1.21283 0.98982 0.98867 0.95504 1.21111 0.96162 0.99616 0.99050 0.89846 0.95724 0.91489 0.91101 0.90839 0.89781 0.90700 0.74602 0.86329 0.87955 0.93656 0.86814 0.84454 0.84104 0.85130 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 9.48 71.98 0.68 -2.51 16 2 C 0.13 2.30 3.18 44.99 0.14 2.44 16 3 C -0.15 -1.33 9.38 71.98 0.68 -0.65 16 4 N -0.71 -12.71 4.97 -442.52 -2.20 -14.91 16 5 C 0.52 14.23 7.05 87.66 0.62 14.85 16 6 O -0.54 -21.26 14.18 19.70 0.28 -20.98 16 7 C -0.05 -1.27 2.84 -14.09 -0.04 -1.31 16 8 H 0.22 2.15 8.14 -2.38 -0.02 2.14 16 9 C 0.24 6.21 14.38 89.44 1.29 7.50 16 10 N -0.43 -12.92 18.54 20.01 0.37 -12.55 16 11 C 0.36 12.87 5.89 29.10 0.17 13.05 16 12 O -0.41 -20.49 13.31 21.29 0.28 -20.20 16 13 C -0.14 -4.92 4.88 29.85 0.15 -4.78 16 14 C 0.07 3.47 1.67 -12.29 -0.02 3.45 16 15 H 0.03 1.64 6.98 -2.39 -0.02 1.62 16 16 C -0.49 -26.61 6.37 25.60 0.16 -26.45 16 17 H 0.05 2.44 7.82 -2.91 -0.02 2.42 16 18 C 0.03 1.76 5.45 84.65 0.46 2.22 16 19 N -0.91 -55.59 12.87 21.45 0.28 -55.31 16 20 Si 0.92 47.30 29.54 68.60 2.03 49.32 16 21 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 22 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.04 -1.80 4.77 -19.86 -0.09 -1.89 16 25 C -0.13 -4.82 8.86 22.27 0.20 -4.63 16 26 C -0.13 -4.05 10.05 22.27 0.22 -3.82 16 27 C -0.15 -4.48 10.05 22.27 0.22 -4.25 16 28 C -0.13 -4.35 10.05 22.27 0.22 -4.12 16 29 C -0.14 -5.80 9.67 22.27 0.22 -5.59 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.42 4.46 8.46 -92.71 -0.78 3.68 16 38 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.10 3.14 7.77 -2.39 -0.02 3.12 16 40 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.11 4.17 7.76 -2.91 -0.02 4.14 16 42 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 45 H 0.10 4.19 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -83.12 390.71 6.53 -76.59 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.22 Total: 14.54 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.28 Total: -16.50 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.55 Total: -82.77 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: 0.56 Total: -41.18 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -83.12 6.53 -76.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796632082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.461 kcal (2) G-P(sol) polarization free energy of solvation -83.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds