Wall clock time and date at job start Tue Mar 31 2020 16:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47461 * 241.56294 * 3 2 1 5 5 C 1.36876 * 119.99865 * 83.24389 * 4 3 2 6 6 H 1.08007 * 119.99788 * 169.22602 * 5 4 3 7 7 C 1.39040 * 119.99921 * 349.21874 * 5 4 3 8 8 N 1.31367 * 120.00473 * 3.53928 * 7 5 4 9 9 Si 1.86805 * 120.00147 * 183.53399 * 7 5 4 10 10 H 1.48507 * 109.46749 * 60.00299 * 9 7 5 11 11 H 1.48498 * 109.47195 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47265 * 300.00531 * 9 7 5 13 13 C 1.34775 * 120.00282 * 263.24868 * 4 3 2 14 14 O 1.21600 * 120.00147 * 182.48123 * 13 4 3 15 15 C 1.47725 * 119.99970 * 2.48330 * 13 4 3 16 16 C 1.39670 * 120.15070 * 222.24747 * 15 13 4 17 17 C 1.37916 * 119.84174 * 180.02562 * 16 15 13 18 18 C 1.38390 * 120.15713 * 359.97438 * 17 16 15 19 19 C 1.38356 * 120.30321 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.92309 * 179.97438 * 19 18 17 21 21 N 1.46899 * 109.46990 * 90.00370 * 20 19 18 22 22 C 1.47014 * 110.99907 * 170.00203 * 21 20 19 23 23 C 1.53097 * 109.25905 * 177.60632 * 22 21 20 24 24 O 1.43014 * 109.29467 * 56.82282 * 23 22 21 25 25 C 1.43016 * 113.73826 * 301.40211 * 24 23 22 26 26 C 1.47017 * 111.00103 * 46.36243 * 21 20 19 27 27 C 1.37952 * 120.15539 * 0.25613 * 19 18 17 28 28 H 4.40638 * 5.51384 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47420 * 121.56535 * 3 2 1 30 30 H 1.09005 * 109.47665 * 1.56861 * 3 2 1 31 31 H 0.96995 * 120.00470 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.07612 * 359.97438 * 16 15 13 33 33 H 1.08004 * 119.91712 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.85223 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46829 * 329.99887 * 20 19 18 36 36 H 1.09005 * 109.47091 * 210.00239 * 20 19 18 37 37 H 1.09000 * 109.50917 * 57.67012 * 22 21 20 38 38 H 1.08995 * 109.50446 * 297.53677 * 22 21 20 39 39 H 1.08996 * 109.51092 * 176.77865 * 23 22 21 40 40 H 1.08999 * 109.50396 * 296.86986 * 23 22 21 41 41 H 1.08997 * 109.47687 * 298.66397 * 25 24 23 42 42 H 1.09003 * 109.54355 * 178.57667 * 25 24 23 43 43 H 1.08998 * 109.50435 * 302.32801 * 26 21 20 44 44 H 1.08997 * 109.50084 * 62.41906 * 26 21 20 45 45 H 1.08002 * 120.08356 * 179.72230 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.6586 1.2145 5 6 3.2310 -0.0471 2.3833 6 1 3.7489 0.3789 3.2299 7 6 2.6627 -1.3123 2.4807 8 7 2.0933 -1.8593 1.4307 9 14 2.7087 -2.2345 4.1045 10 1 2.0021 -1.4429 5.1435 11 1 2.0407 -3.5512 3.9452 12 1 4.1204 -2.4427 4.5158 13 6 3.4875 1.9587 1.1810 14 8 3.9351 2.4929 2.1775 15 6 3.3311 2.7348 -0.0661 16 6 4.3336 3.6180 -0.4732 17 6 4.1807 4.3398 -1.6384 18 6 3.0376 4.1902 -2.4040 19 6 2.0406 3.3171 -2.0067 20 6 0.7990 3.1612 -2.8466 21 7 1.0051 2.0907 -3.8312 22 6 -0.2542 1.7474 -4.5076 23 6 0.0166 0.6730 -5.5641 24 8 0.6224 -0.4619 -4.9394 25 6 1.8509 -0.1635 -4.2707 26 6 1.5987 0.9024 -3.2010 27 6 2.1777 2.5931 -0.8404 28 1 -1.0501 0.0001 -0.0003 29 1 3.0090 0.5388 -0.8756 30 1 3.0098 -1.0265 -0.0281 31 1 1.6965 -2.7418 1.4987 32 1 5.2259 3.7360 0.1235 33 1 4.9550 5.0234 -1.9542 34 1 2.9232 4.7575 -3.3158 35 1 0.5916 4.0971 -3.3655 36 1 -0.0444 2.9070 -2.2047 37 1 -0.6629 2.6361 -4.9887 38 1 -0.9680 1.3675 -3.7768 39 1 -0.9231 0.3743 -6.0287 40 1 0.6881 1.0715 -6.3246 41 1 2.5764 0.2104 -4.9931 42 1 2.2386 -1.0669 -3.7998 43 1 2.5425 1.1743 -2.7283 44 1 0.9147 0.5095 -2.4488 45 1 1.3967 1.9152 -0.5290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799088285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:19 Heat of formation + Delta-G solvation = 42.365456 kcal Electronic energy + Delta-G solvation = -29193.934203 eV Core-core repulsion = 25372.511014 eV Total energy + Delta-G solvation = -3821.423189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.14597 -39.17285 -37.81046 -35.78094 -35.25816 -32.45026 -31.67883 -31.41722 -30.93807 -30.40980 -27.79064 -26.59144 -25.08985 -24.30600 -23.95362 -22.71664 -21.32824 -20.41013 -18.95290 -18.03304 -16.87179 -16.72466 -16.37145 -16.05527 -15.97669 -15.34218 -15.14437 -14.99774 -14.64748 -14.40706 -14.20782 -13.97588 -13.82998 -13.54885 -13.03442 -12.71781 -12.53333 -12.37497 -12.29372 -12.02250 -11.84690 -11.39938 -11.36432 -11.29225 -11.14796 -10.95547 -10.63900 -10.60079 -10.54919 -10.39764 -9.66896 -9.62026 -9.33551 -8.86655 -8.70372 -8.57838 -8.35169 -8.21302 -8.05478 -6.34458 -3.96172 1.44804 1.62946 3.11959 3.19069 3.22133 3.51567 3.71391 3.81897 3.89063 4.01380 4.08791 4.30097 4.73473 4.81034 4.91613 5.00691 5.03887 5.09599 5.14165 5.24611 5.33897 5.37177 5.43075 5.48103 5.55382 5.60901 5.65467 5.67016 5.76993 5.82179 5.88623 5.98092 6.09467 6.22630 6.27676 6.35026 6.68523 6.78433 6.86126 6.91907 6.93420 6.96735 7.07846 7.16187 7.25049 7.45085 7.91174 8.34485 8.68626 9.01857 9.23560 9.78507 10.54970 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.005056 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.618543 B = 5536.188154 C = 7279.249824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.088 4.088 3 C 0.216 3.784 4 N -0.429 5.429 5 C -0.300 4.300 6 H 0.108 0.892 7 C 0.029 3.971 8 N -0.874 5.874 9 Si 0.935 3.065 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.476 3.524 14 O -0.583 6.583 15 C -0.096 4.096 16 C -0.078 4.078 17 C -0.130 4.130 18 C -0.097 4.097 19 C -0.098 4.098 20 C 0.098 3.902 21 N -0.530 5.530 22 C 0.016 3.984 23 C 0.065 3.935 24 O -0.385 6.385 25 C 0.065 3.935 26 C 0.006 3.994 27 C -0.100 4.100 28 H 0.197 0.803 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.271 0.729 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 5.386 -14.346 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.090 4.090 3 C 0.093 3.907 4 N -0.146 5.146 5 C -0.428 4.428 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.514 5.514 9 Si 0.762 3.238 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.266 3.734 14 O -0.469 6.469 15 C -0.100 4.100 16 C -0.098 4.098 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.098 4.098 20 C -0.029 4.029 21 N -0.255 5.255 22 C -0.112 4.112 23 C -0.012 4.012 24 O -0.304 6.304 25 C -0.012 4.012 26 C -0.121 4.121 27 C -0.119 4.119 28 H 0.214 0.786 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.712 5.380 -14.221 15.444 hybrid contribution -0.894 -0.543 1.423 1.766 sum -3.606 4.837 -12.798 14.149 Atomic orbital electron populations 1.24277 0.95412 1.06419 1.03823 1.23049 0.94234 0.94898 0.96821 1.19061 0.84170 1.01606 0.85818 1.43659 1.54032 1.07482 1.09401 1.19795 1.33543 0.98183 0.91257 0.87431 1.25346 0.95595 0.97159 0.99209 1.69871 1.36666 1.16876 1.28031 0.85843 0.78710 0.78145 0.81145 1.19854 1.20796 1.19724 1.17953 0.85684 0.82030 0.87759 1.90621 1.50864 1.69542 1.35836 1.20232 0.95281 0.98604 0.95835 1.21221 0.98411 0.94477 0.95646 1.21005 0.98024 1.00400 0.95419 1.20992 0.93409 0.98100 0.99089 1.19556 0.96461 0.98214 0.95605 1.21036 0.94349 0.95231 0.92262 1.62395 1.24895 1.08581 1.29609 1.22793 0.91370 0.99336 0.97735 1.22602 0.98259 0.86290 0.94041 1.87994 1.38310 1.32771 1.71282 1.22697 0.86031 0.98550 0.93902 1.23065 1.01719 0.90422 0.96928 1.21934 0.98065 0.98391 0.93518 0.78552 0.92421 0.84382 0.91775 0.85612 0.86038 0.86249 0.89901 0.93763 0.89898 0.93765 0.88802 0.92537 0.92622 0.88193 0.88971 0.92282 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -5.63 18.35 29.55 0.54 -5.09 16 2 C -0.09 -1.90 7.27 -37.13 -0.27 -2.17 16 3 C 0.22 4.76 4.76 -6.83 -0.03 4.72 16 4 N -0.43 -10.81 2.60 -119.05 -0.31 -11.12 16 5 C -0.30 -8.11 9.48 -15.00 -0.14 -8.26 16 6 H 0.11 3.05 7.20 -52.48 -0.38 2.67 16 7 C 0.03 0.74 5.38 -17.45 -0.09 0.64 16 8 N -0.87 -21.74 8.07 55.50 0.45 -21.29 16 9 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.48 11.86 7.25 -12.38 -0.09 11.77 16 14 O -0.58 -16.40 16.55 5.28 0.09 -16.31 16 15 C -0.10 -1.94 4.98 -104.96 -0.52 -2.47 16 16 C -0.08 -1.36 9.67 -39.16 -0.38 -1.74 16 17 C -0.13 -1.83 10.03 -39.64 -0.40 -2.23 16 18 C -0.10 -1.31 9.69 -39.48 -0.38 -1.69 16 19 C -0.10 -1.46 4.13 -104.68 -0.43 -1.89 16 20 C 0.10 1.26 5.43 -4.97 -0.03 1.23 16 21 N -0.53 -6.71 4.87 -235.74 -1.15 -7.86 16 22 C 0.02 0.17 5.63 -3.71 -0.02 0.15 16 23 C 0.07 0.69 7.01 37.21 0.26 0.95 16 24 O -0.39 -5.28 10.83 -35.23 -0.38 -5.66 16 25 C 0.07 0.85 7.01 37.21 0.26 1.12 16 26 C 0.01 0.09 4.46 -3.71 -0.02 0.07 16 27 C -0.10 -1.80 5.58 -39.16 -0.22 -2.02 16 28 H 0.20 3.30 7.80 -54.08 -0.42 2.88 16 29 H 0.06 1.14 4.24 -51.93 -0.22 0.92 16 30 H 0.14 3.26 5.97 -51.93 -0.31 2.95 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.04 0.60 8.02 -51.93 -0.42 0.18 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.42 4.78 -51.93 -0.25 1.17 16 44 H 0.06 0.96 6.03 -51.93 -0.31 0.64 16 45 H 0.14 2.71 3.97 -52.49 -0.21 2.50 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -30.24 357.31 -8.78 -39.02 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.88 Total: 9.41 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.96 Total: -6.89 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -1.01 Total: -40.28 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.29 Total: -21.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.24 -8.78 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799088285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.381 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds