Wall clock time and date at job start Tue Mar 31 2020 16:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47461 * 241.56294 * 3 2 1 5 5 C 1.36876 * 119.99865 * 83.24389 * 4 3 2 6 6 H 1.08007 * 119.99788 * 169.22602 * 5 4 3 7 7 C 1.39040 * 119.99921 * 349.21874 * 5 4 3 8 8 N 1.31367 * 120.00473 * 3.53928 * 7 5 4 9 9 Si 1.86805 * 120.00147 * 183.53399 * 7 5 4 10 10 H 1.48507 * 109.46749 * 60.00299 * 9 7 5 11 11 H 1.48498 * 109.47195 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47265 * 300.00531 * 9 7 5 13 13 C 1.34775 * 120.00282 * 263.24868 * 4 3 2 14 14 O 1.21600 * 120.00147 * 182.48123 * 13 4 3 15 15 C 1.47725 * 119.99970 * 2.48330 * 13 4 3 16 16 C 1.39670 * 120.15070 * 222.24747 * 15 13 4 17 17 C 1.37916 * 119.84174 * 180.02562 * 16 15 13 18 18 C 1.38390 * 120.15713 * 359.97438 * 17 16 15 19 19 C 1.38356 * 120.30321 * 0.02562 * 18 17 16 20 20 C 1.50708 * 119.92309 * 179.97438 * 19 18 17 21 21 N 1.46899 * 109.46990 * 90.00370 * 20 19 18 22 22 C 1.47014 * 110.99907 * 170.00203 * 21 20 19 23 23 C 1.53097 * 109.25905 * 177.60632 * 22 21 20 24 24 O 1.43014 * 109.29467 * 56.82282 * 23 22 21 25 25 C 1.43016 * 113.73826 * 301.40211 * 24 23 22 26 26 C 1.47017 * 111.00103 * 46.36243 * 21 20 19 27 27 C 1.37952 * 120.15539 * 0.25613 * 19 18 17 28 28 H 4.40638 * 5.51384 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47420 * 121.56535 * 3 2 1 30 30 H 1.09005 * 109.47665 * 1.56861 * 3 2 1 31 31 H 0.96995 * 120.00470 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.07612 * 359.97438 * 16 15 13 33 33 H 1.08004 * 119.91712 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.85223 * 180.02562 * 18 17 16 35 35 H 1.09000 * 109.46829 * 329.99887 * 20 19 18 36 36 H 1.09005 * 109.47091 * 210.00239 * 20 19 18 37 37 H 1.09000 * 109.50917 * 57.67012 * 22 21 20 38 38 H 1.08995 * 109.50446 * 297.53677 * 22 21 20 39 39 H 1.08996 * 109.51092 * 176.77865 * 23 22 21 40 40 H 1.08999 * 109.50396 * 296.86986 * 23 22 21 41 41 H 1.08997 * 109.47687 * 298.66397 * 25 24 23 42 42 H 1.09003 * 109.54355 * 178.57667 * 25 24 23 43 43 H 1.08998 * 109.50435 * 302.32801 * 26 21 20 44 44 H 1.08997 * 109.50084 * 62.41906 * 26 21 20 45 45 H 1.08002 * 120.08356 * 179.72230 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1340 0.6586 1.2145 5 6 3.2310 -0.0471 2.3833 6 1 3.7489 0.3789 3.2299 7 6 2.6627 -1.3123 2.4807 8 7 2.0933 -1.8593 1.4307 9 14 2.7087 -2.2345 4.1045 10 1 2.0021 -1.4429 5.1435 11 1 2.0407 -3.5512 3.9452 12 1 4.1204 -2.4427 4.5158 13 6 3.4875 1.9587 1.1810 14 8 3.9351 2.4929 2.1775 15 6 3.3311 2.7348 -0.0661 16 6 4.3336 3.6180 -0.4732 17 6 4.1807 4.3398 -1.6384 18 6 3.0376 4.1902 -2.4040 19 6 2.0406 3.3171 -2.0067 20 6 0.7990 3.1612 -2.8466 21 7 1.0051 2.0907 -3.8312 22 6 -0.2542 1.7474 -4.5076 23 6 0.0166 0.6730 -5.5641 24 8 0.6224 -0.4619 -4.9394 25 6 1.8509 -0.1635 -4.2707 26 6 1.5987 0.9024 -3.2010 27 6 2.1777 2.5931 -0.8404 28 1 -1.0501 0.0001 -0.0003 29 1 3.0090 0.5388 -0.8756 30 1 3.0098 -1.0265 -0.0281 31 1 1.6965 -2.7418 1.4987 32 1 5.2259 3.7360 0.1235 33 1 4.9550 5.0234 -1.9542 34 1 2.9232 4.7575 -3.3158 35 1 0.5916 4.0971 -3.3655 36 1 -0.0444 2.9070 -2.2047 37 1 -0.6629 2.6361 -4.9887 38 1 -0.9680 1.3675 -3.7768 39 1 -0.9231 0.3743 -6.0287 40 1 0.6881 1.0715 -6.3246 41 1 2.5764 0.2104 -4.9931 42 1 2.2386 -1.0669 -3.7998 43 1 2.5425 1.1743 -2.7283 44 1 0.9147 0.5095 -2.4488 45 1 1.3967 1.9152 -0.5290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799088285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:18 Heat of formation + Delta-G solvation = 23.060625 kcal Electronic energy + Delta-G solvation = -29194.771324 eV Core-core repulsion = 25372.511014 eV Total energy + Delta-G solvation = -3822.260309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50580 -40.44232 -39.26318 -37.37449 -36.64614 -34.23268 -33.30100 -32.73308 -32.04262 -31.76207 -28.85821 -28.39526 -26.89644 -25.36333 -24.95415 -24.19848 -22.63317 -21.45503 -20.47034 -19.85719 -18.52205 -18.30100 -17.50387 -17.46319 -17.01183 -16.63799 -16.55412 -16.11775 -15.97000 -15.89402 -15.77743 -15.20609 -15.12379 -14.90921 -14.52745 -14.26763 -14.16139 -13.83376 -13.56248 -13.16331 -13.03599 -12.94823 -12.93095 -12.55887 -12.52439 -12.31720 -12.19108 -12.17805 -11.84968 -11.52968 -11.42790 -11.04842 -10.63312 -10.60555 -10.53052 -10.00999 -9.80127 -9.73883 -9.29990 -8.28662 -6.00893 0.10799 0.37861 1.35242 1.37702 1.47360 1.88164 2.00269 2.24948 2.30827 2.66056 2.94964 3.04285 3.11040 3.13141 3.66318 3.75895 3.94101 4.00224 4.02562 4.11078 4.18540 4.25504 4.30863 4.33582 4.43017 4.48689 4.53425 4.64610 4.67127 4.74832 4.77726 4.90808 4.96038 4.99547 5.06309 5.09516 5.15085 5.36043 5.37854 5.45271 5.53201 5.58950 5.89959 5.94377 5.97720 6.05688 6.23755 6.38629 7.02240 7.03696 7.30039 7.85528 8.56938 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.005056 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.618543 B = 5536.188154 C = 7279.249824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.116 4.116 3 C 0.228 3.772 4 N -0.440 5.440 5 C -0.344 4.344 6 H 0.079 0.921 7 C 0.004 3.996 8 N -0.875 5.875 9 Si 0.993 3.007 10 H -0.280 1.280 11 H -0.267 1.267 12 H -0.268 1.268 13 C 0.464 3.536 14 O -0.633 6.633 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.115 4.115 18 C -0.078 4.078 19 C -0.093 4.093 20 C 0.100 3.900 21 N -0.524 5.524 22 C 0.016 3.984 23 C 0.060 3.940 24 O -0.406 6.406 25 C 0.067 3.933 26 C 0.013 3.987 27 C -0.106 4.106 28 H 0.228 0.772 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.274 0.726 32 H 0.117 0.883 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.113 0.887 38 H 0.031 0.969 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.034 0.966 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.350 6.565 -17.483 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.155 5.155 5 C -0.472 4.472 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.513 5.513 9 Si 0.816 3.184 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.193 1.193 13 C 0.255 3.745 14 O -0.523 6.523 15 C -0.131 4.131 16 C -0.110 4.110 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.094 4.094 20 C -0.027 4.027 21 N -0.249 5.249 22 C -0.112 4.112 23 C -0.016 4.016 24 O -0.325 6.325 25 C -0.010 4.010 26 C -0.115 4.115 27 C -0.125 4.125 28 H 0.245 0.755 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.134 0.866 36 H 0.052 0.948 37 H 0.131 0.869 38 H 0.049 0.951 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.977 6.540 -17.409 19.017 hybrid contribution -0.557 -0.851 2.280 2.497 sum -4.534 5.689 -15.129 16.787 Atomic orbital electron populations 1.25013 0.96233 1.05018 1.02369 1.23044 0.94449 0.96139 0.98115 1.18875 0.84878 1.00281 0.85298 1.43847 1.54057 1.07852 1.09785 1.19703 1.35972 0.99641 0.91862 0.90276 1.26017 0.94610 0.97015 1.02193 1.70010 1.35619 1.16856 1.28812 0.85000 0.78812 0.77252 0.77304 1.20547 1.19103 1.19310 1.18814 0.84460 0.82144 0.89077 1.90547 1.52977 1.70606 1.38129 1.19951 0.97752 1.00303 0.95091 1.21309 0.97656 0.94811 0.97272 1.21387 0.99127 0.99357 0.93371 1.21475 0.91881 0.96589 0.99706 1.19801 0.97792 0.97389 0.94370 1.21122 0.92713 0.96659 0.92212 1.62469 1.25870 1.07683 1.28889 1.22906 0.90193 1.00701 0.97422 1.22850 0.99335 0.85443 0.93976 1.87967 1.38480 1.34571 1.71522 1.22659 0.86389 0.98056 0.93887 1.22897 1.00469 0.91449 0.96719 1.21761 0.96867 0.99147 0.94748 0.75536 0.90613 0.86411 0.91464 0.86531 0.82070 0.82018 0.86615 0.94825 0.86937 0.95093 0.86671 0.91353 0.91340 0.88808 0.90509 0.94754 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.78 18.35 74.32 1.36 -9.41 16 2 C -0.12 -5.13 7.27 31.12 0.23 -4.90 16 3 C 0.23 10.59 4.76 84.57 0.40 10.99 16 4 N -0.44 -23.64 2.60 -648.84 -1.69 -25.32 16 5 C -0.34 -19.82 9.48 84.10 0.80 -19.03 16 6 H 0.08 4.88 7.20 -2.91 -0.02 4.85 16 7 C 0.00 0.20 5.38 84.95 0.46 0.65 16 8 N -0.87 -44.46 8.07 21.68 0.18 -44.28 16 9 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 C 0.46 24.74 7.25 86.75 0.63 25.37 16 14 O -0.63 -38.46 16.55 -4.03 -0.07 -38.52 16 15 C -0.13 -5.36 4.98 -20.09 -0.10 -5.46 16 16 C -0.09 -3.18 9.67 22.54 0.22 -2.96 16 17 C -0.11 -2.85 10.03 22.23 0.22 -2.63 16 18 C -0.08 -1.76 9.69 22.33 0.22 -1.55 16 19 C -0.09 -2.55 4.13 -19.90 -0.08 -2.63 16 20 C 0.10 2.23 5.43 85.56 0.46 2.69 16 21 N -0.52 -11.74 4.87 -899.76 -4.38 -16.12 16 22 C 0.02 0.29 5.63 86.31 0.49 0.77 16 23 C 0.06 1.10 7.01 72.01 0.50 1.60 16 24 O -0.41 -10.49 10.83 -148.98 -1.61 -12.10 16 25 C 0.07 1.69 7.01 72.02 0.50 2.20 16 26 C 0.01 0.35 4.46 86.31 0.38 0.74 16 27 C -0.11 -3.85 5.58 22.54 0.13 -3.73 16 28 H 0.23 7.31 7.80 -4.41 -0.03 7.27 16 29 H 0.08 3.17 4.24 -2.39 -0.01 3.16 16 30 H 0.12 5.87 5.97 -2.38 -0.01 5.85 16 31 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 36 H 0.03 0.84 8.02 -2.38 -0.02 0.82 16 37 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.08 2.33 4.78 -2.39 -0.01 2.32 16 44 H 0.03 1.12 6.03 -2.39 -0.01 1.10 16 45 H 0.12 4.84 3.97 -2.91 -0.01 4.83 16 Total: -1.00 -70.94 357.31 2.28 -68.66 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 1.01 Total: 30.26 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 6.82 Total: -7.27 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -5.89 Total: -85.73 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -1.68 Total: -50.62 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.94 2.28 -68.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799088285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.720 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds