Wall clock time and date at job start Tue Mar 31 2020 16:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47190 * 86.77030 * 3 2 1 5 5 C 1.34770 * 119.99930 * 179.97438 * 4 3 2 6 6 O 1.21590 * 120.00250 * 0.02562 * 5 4 3 7 7 C 1.47524 * 119.99879 * 179.97438 * 5 4 3 8 8 C 1.39682 * 120.19838 * 5.30057 * 7 5 4 9 9 C 1.37802 * 119.92142 * 179.97438 * 8 7 5 10 10 C 1.38556 * 120.32728 * 359.97438 * 9 8 7 11 11 C 1.38025 * 120.40940 * 0.02562 * 10 9 8 12 12 C 1.38845 * 120.06840 * 0.02562 * 11 10 9 13 13 N 1.39291 * 120.16523 * 180.02562 * 12 11 10 14 14 C 1.34781 * 119.99745 * 25.21002 * 13 12 11 15 15 O 1.21277 * 119.99936 * 5.59026 * 14 13 12 16 16 C 1.50700 * 119.99843 * 185.58990 * 14 13 12 17 17 C 1.52997 * 109.47252 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47151 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47151 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47252 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99941 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00150 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47136 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47589 * 120.00248 * 24 22 20 27 27 H 1.48507 * 109.47136 * 240.00291 * 24 22 20 28 28 H 4.40646 * 5.51326 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47385 * 326.76523 * 3 2 1 30 30 H 1.09003 * 109.46900 * 206.76433 * 3 2 1 31 31 H 0.97000 * 119.99770 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.04113 * 0.24999 * 8 7 5 33 33 H 1.08000 * 119.83399 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.79767 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.96436 * 180.02562 * 11 10 9 36 36 H 0.97001 * 119.99995 * 205.20680 * 13 12 11 37 37 H 1.09002 * 109.46753 * 300.00234 * 16 14 13 38 38 H 1.09005 * 109.47161 * 59.99520 * 16 14 13 39 39 H 1.09002 * 109.46972 * 300.00080 * 17 16 14 40 40 H 1.08999 * 109.46764 * 59.99807 * 17 16 14 41 41 H 1.09002 * 109.47362 * 299.99981 * 18 17 16 42 42 H 1.08999 * 109.46873 * 60.00021 * 18 17 16 43 43 H 1.09002 * 109.46972 * 300.00220 * 19 18 17 44 44 H 1.08999 * 109.47215 * 60.00231 * 19 18 17 45 45 H 0.97006 * 119.99688 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0769 -1.3790 5 6 4.4594 -0.0897 -1.6249 6 8 5.2496 -0.0373 -0.7022 7 6 4.9512 -0.1684 -3.0135 8 6 4.0520 -0.1184 -4.0813 9 6 4.5177 -0.1919 -5.3761 10 6 5.8751 -0.3147 -5.6255 11 6 6.7756 -0.3654 -4.5808 12 6 6.3247 -0.2939 -3.2696 13 7 7.2317 -0.3443 -2.2137 14 6 8.5091 0.0414 -2.4037 15 8 8.8447 0.5270 -3.4631 16 6 9.5204 -0.1308 -1.2997 17 6 10.8825 0.3821 -1.7712 18 6 11.9090 0.2079 -0.6501 19 6 13.2713 0.7202 -1.1218 20 6 14.2825 0.5480 -0.0178 21 1 13.9835 0.1160 0.9258 22 6 15.5896 0.9411 -0.2127 23 7 15.9538 1.4668 -1.3619 24 14 16.8432 0.7270 1.1555 25 1 16.1851 0.1173 2.3389 26 1 17.9402 -0.1578 0.6878 27 1 17.4007 2.0522 1.5278 28 1 -1.0500 -0.0002 0.0000 29 1 3.0098 -0.8588 0.5632 30 1 3.0089 0.9184 0.4628 31 1 2.5041 -0.1191 -2.1151 32 1 2.9934 -0.0179 -3.8923 33 1 3.8211 -0.1536 -6.2006 34 1 6.2306 -0.3720 -6.6438 35 1 7.8322 -0.4608 -4.7835 36 1 6.9441 -0.6569 -1.3417 37 1 9.2019 0.4348 -0.4240 38 1 9.5997 -1.1867 -1.0411 39 1 11.2006 -0.1838 -2.6468 40 1 10.8034 1.4380 -2.0300 41 1 11.5907 0.7741 0.2252 42 1 11.9881 -0.8478 -0.3909 43 1 13.5893 0.1536 -1.9970 44 1 13.1925 1.7759 -1.3814 45 1 16.8733 1.7437 -1.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808280550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:41 Heat of formation + Delta-G solvation = -2.217587 kcal Electronic energy + Delta-G solvation = -25937.672853 eV Core-core repulsion = 22114.316398 eV Total energy + Delta-G solvation = -3823.356455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22860 -39.81348 -38.36160 -36.16956 -35.06306 -34.66106 -33.26153 -32.62894 -31.51865 -30.53228 -29.18321 -27.65350 -25.69927 -24.06739 -23.36389 -21.88844 -21.27212 -20.10015 -19.95256 -19.50293 -17.99685 -17.51884 -16.95588 -16.57940 -16.12763 -16.00206 -15.79153 -15.51593 -14.86107 -14.73992 -14.41256 -14.25915 -14.10052 -13.95420 -13.72340 -13.51300 -12.96674 -12.62270 -12.42327 -12.18758 -11.90427 -11.65765 -11.57413 -11.39670 -11.07349 -10.97547 -10.78793 -10.51835 -10.46160 -10.39238 -10.28340 -9.77637 -9.70634 -9.58069 -9.27991 -9.18866 -8.94801 -8.30370 -8.28072 -5.92832 -3.95045 0.47119 1.02979 1.81095 2.18400 2.45326 2.60592 2.96655 2.99774 3.35256 3.42391 3.46674 3.58060 3.66544 4.24524 4.39269 4.51329 4.65195 4.77417 4.93308 4.97682 5.05022 5.10928 5.25621 5.27446 5.34976 5.38683 5.42801 5.52937 5.71766 5.87680 5.88753 5.95017 6.15886 6.17329 6.24685 6.31998 6.56644 6.70619 6.86406 6.87835 6.92307 7.03995 7.23023 7.35939 7.67053 7.77287 7.92998 8.08509 8.10311 8.50895 9.12877 9.68575 11.18503 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.001952 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.240617 B =14337.561326 C =15909.142603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.212 4.212 3 C 0.230 3.770 4 N -0.724 5.724 5 C 0.572 3.428 6 O -0.539 6.539 7 C -0.189 4.189 8 C -0.063 4.063 9 C -0.156 4.156 10 C -0.065 4.065 11 C -0.147 4.147 12 C 0.226 3.774 13 N -0.666 5.666 14 C 0.512 3.488 15 O -0.515 6.515 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.111 4.111 19 C 0.019 3.981 20 C -0.519 4.519 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.895 5.895 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.285 1.285 28 H 0.223 0.777 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.404 0.596 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.155 0.845 36 H 0.425 0.575 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.006 -5.771 -4.477 35.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.212 4.212 3 C 0.108 3.892 4 N -0.377 5.377 5 C 0.361 3.639 6 O -0.418 6.418 7 C -0.195 4.195 8 C -0.083 4.083 9 C -0.175 4.175 10 C -0.084 4.084 11 C -0.167 4.167 12 C 0.126 3.874 13 N -0.315 5.315 14 C 0.302 3.698 15 O -0.389 6.389 16 C -0.177 4.177 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.018 4.018 20 C -0.558 4.558 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.239 0.761 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.240 0.760 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.269 0.731 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -33.947 -5.331 -4.522 34.659 hybrid contribution -0.081 -0.175 0.772 0.796 sum -34.028 -5.506 -3.750 34.674 Atomic orbital electron populations 1.25070 0.95976 1.00589 0.96856 1.22888 0.94229 1.01066 1.03057 1.18106 0.83190 1.04076 0.83814 1.45812 1.07076 1.76102 1.08705 1.18132 0.81767 0.75460 0.88506 1.90613 1.54662 1.50653 1.45881 1.19460 0.92953 1.14299 0.92828 1.21012 0.98332 0.96820 0.92102 1.21010 0.95908 1.04124 0.96423 1.21318 0.92815 0.94839 0.99380 1.21559 1.02490 1.02383 0.90250 1.17829 0.87578 0.93146 0.88816 1.44219 1.09431 1.63673 1.14193 1.21433 0.82197 0.76011 0.90152 1.90659 1.79176 1.41401 1.27683 1.21830 0.95049 1.04095 0.96758 1.21475 0.91255 1.01664 0.99740 1.21652 0.96660 1.00275 0.96250 1.19104 0.89730 0.96447 0.96503 1.21331 0.94038 1.40444 0.99943 0.92675 1.25042 0.98582 0.95408 0.95574 1.69992 1.17701 1.42391 1.23391 0.86556 0.81488 0.77717 0.82342 1.19781 1.21070 1.21074 0.76054 0.88631 0.88644 0.75981 0.85681 0.85382 0.85082 0.82718 0.73084 0.88539 0.88612 0.91687 0.91676 0.93363 0.93392 0.96563 0.96556 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 19.25 29.55 0.57 -0.19 16 2 C -0.21 -1.26 13.46 -37.12 -0.50 -1.76 16 3 C 0.23 1.47 6.15 -6.83 -0.04 1.43 16 4 N -0.72 -4.91 5.49 -64.22 -0.35 -5.26 16 5 C 0.57 5.64 7.75 -12.48 -0.10 5.54 16 6 O -0.54 -6.68 13.81 5.29 0.07 -6.61 16 7 C -0.19 -1.88 5.89 -104.81 -0.62 -2.50 16 8 C -0.06 -0.46 9.52 -39.20 -0.37 -0.83 16 9 C -0.16 -1.12 10.02 -39.62 -0.40 -1.51 16 10 C -0.06 -0.57 10.03 -39.54 -0.40 -0.97 16 11 C -0.15 -1.74 8.70 -39.43 -0.34 -2.09 16 12 C 0.23 2.76 6.43 -83.48 -0.54 2.23 16 13 N -0.67 -8.55 4.85 -9.68 -0.05 -8.60 16 14 C 0.51 7.61 7.63 -10.98 -0.08 7.52 16 15 O -0.51 -9.08 13.16 5.56 0.07 -9.01 16 16 C -0.14 -1.94 5.70 -27.88 -0.16 -2.10 16 17 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 18 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 19 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 20 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 21 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 22 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 24 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 28 H 0.22 0.26 7.80 -54.09 -0.42 -0.16 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 1.85 6.51 -40.82 -0.27 1.59 16 32 H 0.13 0.49 6.44 -52.48 -0.34 0.16 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.16 2.11 5.81 -52.48 -0.31 1.81 16 36 H 0.42 5.08 6.01 -40.82 -0.25 4.83 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -35.57 387.26 -8.67 -44.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.19 Total: 2.53 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.78 Total: -13.27 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.34 Total: -40.86 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.15 Total: -15.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.57 -8.67 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808280550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.028 kcal (2) G-P(sol) polarization free energy of solvation -35.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds