Wall clock time and date at job start Tue Mar 31 2020 16:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47190 * 86.77030 * 3 2 1 5 5 C 1.34770 * 119.99930 * 179.97438 * 4 3 2 6 6 O 1.21590 * 120.00250 * 0.02562 * 5 4 3 7 7 C 1.47524 * 119.99879 * 179.97438 * 5 4 3 8 8 C 1.39682 * 120.19838 * 5.30057 * 7 5 4 9 9 C 1.37802 * 119.92142 * 179.97438 * 8 7 5 10 10 C 1.38556 * 120.32728 * 359.97438 * 9 8 7 11 11 C 1.38025 * 120.40940 * 0.02562 * 10 9 8 12 12 C 1.38845 * 120.06840 * 0.02562 * 11 10 9 13 13 N 1.39291 * 120.16523 * 180.02562 * 12 11 10 14 14 C 1.34781 * 119.99745 * 25.21002 * 13 12 11 15 15 O 1.21277 * 119.99936 * 5.59026 * 14 13 12 16 16 C 1.50700 * 119.99843 * 185.58990 * 14 13 12 17 17 C 1.52997 * 109.47252 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47151 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47151 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47252 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99941 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00150 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99856 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00304 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47136 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47589 * 120.00248 * 24 22 20 27 27 H 1.48507 * 109.47136 * 240.00291 * 24 22 20 28 28 H 4.40646 * 5.51326 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.47385 * 326.76523 * 3 2 1 30 30 H 1.09003 * 109.46900 * 206.76433 * 3 2 1 31 31 H 0.97000 * 119.99770 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.04113 * 0.24999 * 8 7 5 33 33 H 1.08000 * 119.83399 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.79767 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.96436 * 180.02562 * 11 10 9 36 36 H 0.97001 * 119.99995 * 205.20680 * 13 12 11 37 37 H 1.09002 * 109.46753 * 300.00234 * 16 14 13 38 38 H 1.09005 * 109.47161 * 59.99520 * 16 14 13 39 39 H 1.09002 * 109.46972 * 300.00080 * 17 16 14 40 40 H 1.08999 * 109.46764 * 59.99807 * 17 16 14 41 41 H 1.09002 * 109.47362 * 299.99981 * 18 17 16 42 42 H 1.08999 * 109.46873 * 60.00021 * 18 17 16 43 43 H 1.09002 * 109.46972 * 300.00220 * 19 18 17 44 44 H 1.08999 * 109.47215 * 60.00231 * 19 18 17 45 45 H 0.97006 * 119.99688 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0769 -1.3790 5 6 4.4594 -0.0897 -1.6249 6 8 5.2496 -0.0373 -0.7022 7 6 4.9512 -0.1684 -3.0135 8 6 4.0520 -0.1184 -4.0813 9 6 4.5177 -0.1919 -5.3761 10 6 5.8751 -0.3147 -5.6255 11 6 6.7756 -0.3654 -4.5808 12 6 6.3247 -0.2939 -3.2696 13 7 7.2317 -0.3443 -2.2137 14 6 8.5091 0.0414 -2.4037 15 8 8.8447 0.5270 -3.4631 16 6 9.5204 -0.1308 -1.2997 17 6 10.8825 0.3821 -1.7712 18 6 11.9090 0.2079 -0.6501 19 6 13.2713 0.7202 -1.1218 20 6 14.2825 0.5480 -0.0178 21 1 13.9835 0.1160 0.9258 22 6 15.5896 0.9411 -0.2127 23 7 15.9538 1.4668 -1.3619 24 14 16.8432 0.7270 1.1555 25 1 16.1851 0.1173 2.3389 26 1 17.9402 -0.1578 0.6878 27 1 17.4007 2.0522 1.5278 28 1 -1.0500 -0.0002 0.0000 29 1 3.0098 -0.8588 0.5632 30 1 3.0089 0.9184 0.4628 31 1 2.5041 -0.1191 -2.1151 32 1 2.9934 -0.0179 -3.8923 33 1 3.8211 -0.1536 -6.2006 34 1 6.2306 -0.3720 -6.6438 35 1 7.8322 -0.4608 -4.7835 36 1 6.9441 -0.6569 -1.3417 37 1 9.2019 0.4348 -0.4240 38 1 9.5997 -1.1867 -1.0411 39 1 11.2006 -0.1838 -2.6468 40 1 10.8034 1.4380 -2.0300 41 1 11.5907 0.7741 0.2252 42 1 11.9881 -0.8478 -0.3909 43 1 13.5893 0.1536 -1.9970 44 1 13.1925 1.7759 -1.3814 45 1 16.8733 1.7437 -1.4989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808280550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:40 Heat of formation + Delta-G solvation = -24.933420 kcal Electronic energy + Delta-G solvation = -25938.657885 eV Core-core repulsion = 22114.316398 eV Total energy + Delta-G solvation = -3824.341487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09439 -40.73900 -39.16303 -36.88282 -36.64734 -35.69280 -34.64665 -33.78033 -32.17034 -31.92555 -30.44299 -28.24682 -27.44526 -24.77283 -24.76869 -23.21585 -22.01691 -21.73759 -21.11933 -20.03855 -18.66419 -18.41530 -18.24844 -17.97373 -17.29713 -17.02011 -16.57734 -16.50963 -16.17729 -15.82224 -15.70046 -15.25012 -14.92004 -14.69862 -14.61621 -14.53423 -14.22739 -13.97633 -13.60149 -13.57185 -13.34684 -13.06883 -12.85746 -12.59675 -12.32776 -12.18704 -12.15905 -11.85479 -11.66001 -11.49875 -11.39058 -11.36032 -11.16173 -11.02157 -10.71946 -10.55711 -10.34046 -9.96150 -9.14534 -8.19075 -6.31031 -0.26979 0.28003 1.35767 1.39942 1.40933 1.52539 1.54522 1.70687 1.83434 2.02072 2.41742 2.43111 2.83930 3.13596 3.32407 3.61297 3.62737 3.78383 3.97757 4.09083 4.10395 4.35220 4.38025 4.43902 4.48432 4.53580 4.63353 4.64505 4.78723 4.85316 4.86561 4.99440 5.07299 5.16122 5.19839 5.26107 5.31402 5.34000 5.43071 5.50742 5.56209 5.77405 5.87569 5.92523 6.25230 6.28539 6.41162 6.56605 6.87144 6.93665 7.08915 7.38431 8.93290 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016542 B = 0.001952 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.240617 B =14337.561326 C =15909.142603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.250 4.250 3 C 0.231 3.769 4 N -0.707 5.707 5 C 0.568 3.432 6 O -0.571 6.571 7 C -0.194 4.194 8 C -0.054 4.054 9 C -0.144 4.144 10 C -0.067 4.067 11 C -0.171 4.171 12 C 0.191 3.809 13 N -0.657 5.657 14 C 0.511 3.489 15 O -0.553 6.553 16 C -0.128 4.128 17 C -0.093 4.093 18 C -0.097 4.097 19 C 0.019 3.981 20 C -0.542 4.542 21 H 0.065 0.935 22 C -0.006 4.006 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.259 1.259 26 H -0.278 1.278 27 H -0.279 1.279 28 H 0.253 0.747 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.416 0.584 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.428 0.572 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.058 0.942 42 H 0.061 0.939 43 H -0.012 1.012 44 H -0.014 1.014 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.294 -6.591 -3.656 39.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.250 4.250 3 C 0.109 3.891 4 N -0.360 5.360 5 C 0.358 3.642 6 O -0.452 6.452 7 C -0.199 4.199 8 C -0.072 4.072 9 C -0.162 4.162 10 C -0.086 4.086 11 C -0.192 4.192 12 C 0.092 3.908 13 N -0.307 5.307 14 C 0.301 3.699 15 O -0.431 6.431 16 C -0.167 4.167 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.018 4.018 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.794 3.206 25 H -0.183 1.183 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.269 0.731 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.255 0.745 32 H 0.182 0.818 33 H 0.184 0.816 34 H 0.167 0.833 35 H 0.145 0.855 36 H 0.273 0.727 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.006 0.994 44 H 0.004 0.996 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -37.316 -6.171 -3.703 38.004 hybrid contribution 0.766 0.091 0.419 0.878 sum -36.550 -6.080 -3.284 37.198 Atomic orbital electron populations 1.25868 0.96704 0.98691 0.94889 1.22921 0.94401 1.02817 1.04863 1.18037 0.83999 1.03729 0.83324 1.45684 1.06197 1.74555 1.09516 1.18202 0.82484 0.75376 0.88177 1.90586 1.55652 1.52327 1.46671 1.19617 0.92363 1.14159 0.93810 1.21484 0.99798 0.94634 0.91319 1.21458 0.95485 1.01695 0.97563 1.21609 0.93518 0.93980 0.99444 1.21470 1.01882 1.04491 0.91341 1.18099 0.88549 0.95508 0.88631 1.44031 1.08848 1.63170 1.14669 1.21462 0.83033 0.75748 0.89641 1.90651 1.79928 1.43467 1.29054 1.21701 0.92401 1.05734 0.96906 1.21245 0.93077 1.00530 0.98306 1.21455 0.93984 1.00800 0.97204 1.19056 0.93057 0.94371 0.95350 1.21784 0.94954 1.40593 1.00697 0.91705 1.26080 1.01099 0.94791 0.98369 1.70141 1.18464 1.43285 1.25804 0.85329 0.78316 0.77927 0.79032 1.18261 1.20347 1.20442 0.73057 0.88844 0.89307 0.74540 0.81784 0.81592 0.83265 0.85488 0.72670 0.86702 0.86045 0.93117 0.93575 0.92283 0.92007 0.99405 0.99591 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 19.25 74.32 1.43 0.54 16 2 C -0.25 -2.51 13.46 31.12 0.42 -2.09 16 3 C 0.23 2.75 6.15 84.57 0.52 3.27 16 4 N -0.71 -8.43 5.49 -475.37 -2.61 -11.04 16 5 C 0.57 10.75 7.75 86.69 0.67 11.42 16 6 O -0.57 -14.22 13.81 -4.00 -0.06 -14.27 16 7 C -0.19 -3.66 5.89 -19.99 -0.12 -3.78 16 8 C -0.05 -0.61 9.52 22.52 0.21 -0.40 16 9 C -0.14 -1.59 10.02 22.24 0.22 -1.37 16 10 C -0.07 -1.12 10.03 22.30 0.22 -0.89 16 11 C -0.17 -4.26 8.70 22.36 0.19 -4.06 16 12 C 0.19 4.77 6.43 38.60 0.25 5.02 16 13 N -0.66 -17.54 4.85 -302.94 -1.47 -19.01 16 14 C 0.51 15.90 7.63 87.66 0.67 16.57 16 15 O -0.55 -20.98 13.16 -3.02 -0.04 -21.02 16 16 C -0.13 -3.63 5.70 29.85 0.17 -3.46 16 17 C -0.09 -3.53 4.50 30.59 0.14 -3.39 16 18 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 19 C 0.02 1.05 4.97 29.85 0.15 1.20 16 20 C -0.54 -32.16 9.11 25.60 0.23 -31.93 16 21 H 0.06 3.63 7.74 -2.91 -0.02 3.61 16 22 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 23 N -0.94 -59.59 13.29 21.45 0.28 -59.31 16 24 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H 0.25 -0.40 7.80 -4.42 -0.03 -0.44 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.42 2.64 6.51 -92.71 -0.60 2.03 16 32 H 0.16 0.52 6.44 -2.91 -0.02 0.50 16 33 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 34 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.13 3.83 5.81 -2.91 -0.02 3.82 16 36 H 0.43 10.50 6.01 -92.71 -0.56 9.94 16 37 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 39 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 40 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -81.44 387.26 4.00 -77.44 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.14 Total: 16.76 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 6.00 Total: -17.23 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.79 Total: -89.36 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.10 Total: -35.30 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -81.44 4.00 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808280550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.503 kcal (2) G-P(sol) polarization free energy of solvation -81.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds