Wall clock time and date at job start Tue Mar 31 2020 15:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 H 1.08995 * 109.47604 * 305.00380 * 3 2 1 5 5 C 1.50698 * 109.46726 * 185.00076 * 3 2 1 6 6 H 1.08003 * 120.00300 * 240.00360 * 5 3 2 7 7 C 1.37884 * 119.99859 * 60.00549 * 5 3 2 8 8 N 1.31510 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47128 * 89.99854 * 9 7 5 11 11 H 1.48498 * 109.46696 * 209.99874 * 9 7 5 12 12 H 1.48498 * 109.47162 * 329.99954 * 9 7 5 13 13 O 1.45200 * 109.46892 * 65.00482 * 3 2 1 14 14 C 1.34659 * 117.00214 * 269.99415 * 13 3 2 15 15 O 1.21413 * 119.99382 * 0.02562 * 14 13 3 16 16 C 1.48206 * 120.00152 * 179.97438 * 14 13 3 17 17 C 1.39859 * 119.19574 * 180.02562 * 16 14 13 18 18 C 1.38555 * 119.56339 * 180.02562 * 17 16 14 19 19 N 1.38695 * 121.00982 * 179.73145 * 18 17 16 20 20 C 1.46901 * 110.99687 * 299.99915 * 19 18 17 21 21 C 1.46894 * 111.00040 * 63.94815 * 19 18 17 22 22 C 1.41507 * 117.98705 * 359.97438 * 18 17 16 23 23 C 1.40184 * 121.25882 * 179.97438 * 22 18 17 24 24 C 1.36232 * 119.66742 * 180.02562 * 23 22 18 25 25 C 1.39357 * 120.86116 * 0.02562 * 24 23 22 26 26 C 1.36049 * 121.04755 * 0.02562 * 25 24 23 27 27 C 1.40789 * 119.75000 * 359.97438 * 26 25 24 28 28 N 1.32059 * 119.19788 * 0.02621 * 16 14 13 29 29 H 1.09006 * 109.46689 * 299.99808 * 1 2 3 30 30 H 1.08997 * 109.47603 * 59.99255 * 1 2 3 31 31 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46689 * 240.00192 * 2 1 3 33 33 H 1.08997 * 109.46704 * 120.00597 * 2 1 3 34 34 H 0.97006 * 120.00031 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.22035 * 359.97438 * 17 16 14 36 36 H 1.08995 * 109.47313 * 63.94904 * 20 19 18 37 37 H 1.09001 * 109.47266 * 183.95563 * 20 19 18 38 38 H 1.09000 * 109.46885 * 303.95294 * 20 19 18 39 39 H 1.09003 * 109.47327 * 56.05306 * 21 19 18 40 40 H 1.09006 * 109.47414 * 176.04881 * 21 19 18 41 41 H 1.08998 * 109.47732 * 296.05104 * 21 19 18 42 42 H 1.08002 * 120.16695 * 0.05412 * 23 22 18 43 43 H 1.07996 * 119.57215 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.47654 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.12066 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7605 11 1 6.3828 0.9223 -2.8175 12 1 6.5570 2.0736 -0.6903 13 8 1.6560 2.0916 1.2408 14 6 0.4690 2.7275 1.2562 15 8 -0.2263 2.7391 0.2610 16 6 0.0110 3.4120 2.4883 17 6 -1.2248 4.0668 2.4858 18 6 -1.6602 4.7097 3.6333 19 7 -2.8780 5.3728 3.6625 20 6 -2.9153 6.4490 2.6632 21 6 -3.9925 4.4358 3.4688 22 6 -0.8224 4.6736 4.7731 23 6 -1.1949 5.3014 5.9699 24 6 -0.3631 5.2468 7.0474 25 6 0.8556 4.5747 6.9762 26 6 1.2495 3.9553 5.8308 27 6 0.4168 3.9898 4.6960 28 7 0.7798 3.3889 3.5618 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8291 -0.0617 -2.9497 35 1 -1.8354 4.0720 1.5949 36 1 -2.8414 6.0198 1.6641 37 1 -3.8529 6.9974 2.7547 38 1 -2.0793 7.1284 2.8295 39 1 -3.9409 3.6492 4.2217 40 1 -4.9376 4.9701 3.5659 41 1 -3.9262 3.9925 2.4752 42 1 -2.1369 5.8254 6.0375 43 1 -0.6518 5.7307 7.9687 44 1 1.4976 4.5451 7.8441 45 1 2.1969 3.4383 5.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810709852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:02 Heat of formation + Delta-G solvation = -18.451008 kcal Electronic energy + Delta-G solvation = -27894.985547 eV Core-core repulsion = 24070.925158 eV Total energy + Delta-G solvation = -3824.060389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24823 -39.49433 -38.20665 -36.83916 -35.75542 -33.47331 -32.39620 -31.39989 -30.82161 -29.80625 -27.94303 -27.34692 -25.70979 -24.91362 -23.27707 -23.10863 -21.68633 -20.72339 -19.58895 -18.12852 -17.96265 -17.46379 -16.57378 -16.00724 -15.65488 -15.42862 -15.23815 -15.19822 -14.82803 -14.41892 -14.15886 -14.07262 -14.04114 -13.39856 -13.03657 -12.82577 -12.68329 -12.41136 -12.27438 -12.05425 -11.76503 -11.71976 -11.63657 -11.43777 -11.29967 -11.16237 -10.95089 -10.62996 -10.38872 -10.27969 -10.08647 -9.75634 -9.53043 -9.36954 -8.97425 -8.93599 -8.79261 -8.43347 -8.28801 -6.16156 -4.22451 0.08628 0.54003 1.80129 2.37561 3.24959 3.27290 3.33016 3.35765 3.37735 3.45092 4.06422 4.16760 4.36051 4.55477 4.63503 4.72400 4.84402 5.01250 5.01779 5.10068 5.16007 5.17349 5.18783 5.28285 5.36983 5.45299 5.55758 5.57273 5.77479 5.89953 5.94611 6.19384 6.21259 6.23378 6.30536 6.32427 6.40638 6.45500 6.67331 6.86241 6.89210 6.94595 7.16661 7.20419 7.60741 7.71939 7.74626 7.93578 8.16803 8.59989 8.90051 9.42252 10.90803 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003362 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.419934 B = 8327.485852 C = 9505.204441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.326 6.326 14 C 0.508 3.492 15 O -0.505 6.505 16 C 0.150 3.850 17 C -0.158 4.158 18 C 0.142 3.858 19 N -0.507 5.507 20 C 0.023 3.977 21 C 0.024 3.976 22 C -0.071 4.071 23 C -0.082 4.082 24 C -0.117 4.117 25 C -0.105 4.105 26 C -0.083 4.083 27 C 0.128 3.872 28 N -0.415 5.415 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.149 0.851 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.139 0.861 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 10.407 16.131 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.166 3.834 4 H 0.066 0.934 5 C -0.557 4.557 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.240 6.240 14 C 0.349 3.651 15 O -0.395 6.395 16 C -0.003 4.003 17 C -0.180 4.180 18 C 0.039 3.961 19 N -0.227 5.227 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.074 4.074 23 C -0.101 4.101 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.102 4.102 27 C 0.003 3.997 28 N -0.126 5.126 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.166 0.834 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.157 0.843 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.211 10.072 16.096 22.575 hybrid contribution 0.141 -0.061 -1.097 1.107 sum -12.070 10.011 14.999 21.700 Atomic orbital electron populations 1.21865 0.98482 0.99091 1.00591 1.22030 0.92554 0.99267 1.03529 1.20797 0.95285 0.88860 0.78480 0.93417 1.21048 0.89539 1.38840 1.06233 0.91151 1.24876 0.99250 0.94768 0.95017 1.69888 1.35361 1.37935 1.09529 0.86273 0.83892 0.78732 0.77265 1.20332 1.21010 1.19592 1.86662 1.32462 1.61167 1.43689 1.20610 0.81604 0.76973 0.85877 1.90783 1.55822 1.58734 1.34127 1.20446 0.91273 0.96546 0.91985 1.22503 0.97016 0.98391 1.00127 1.18856 0.91342 0.94105 0.91753 1.59301 1.00395 1.12317 1.50730 1.22546 1.03484 0.93562 0.92724 1.22535 0.92869 0.95681 1.01138 1.18823 0.94445 0.99491 0.94686 1.20962 1.00089 0.97910 0.91118 1.21022 0.94403 0.99261 0.98848 1.20932 0.96615 0.97009 0.97890 1.20926 0.99621 0.99010 0.90646 1.18952 0.92338 0.95588 0.92774 1.68082 1.31884 1.14651 0.98029 0.95162 0.92776 0.94695 0.87177 0.93794 0.92417 0.83382 0.94185 0.90230 0.90851 0.90888 0.90235 0.94233 0.84320 0.85504 0.85154 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.45 5.49 -26.73 -0.15 -3.60 16 3 C 0.22 5.95 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.42 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.84 8.90 -34.44 -0.31 -15.14 16 6 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.27 11.29 55.43 0.63 -24.64 16 9 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 O -0.33 -8.26 9.60 -40.38 -0.39 -8.65 16 14 C 0.51 11.41 6.40 34.83 0.22 11.63 16 15 O -0.51 -11.82 13.45 -19.20 -0.26 -12.07 16 16 C 0.15 2.82 6.74 -83.07 -0.56 2.26 16 17 C -0.16 -2.43 8.24 -38.86 -0.32 -2.75 16 18 C 0.14 1.85 4.71 -83.40 -0.39 1.46 16 19 N -0.51 -5.13 4.19 -186.43 -0.78 -5.91 16 20 C 0.02 0.20 9.29 60.07 0.56 0.76 16 21 C 0.02 0.21 9.33 60.06 0.56 0.77 16 22 C -0.07 -0.95 5.76 -106.58 -0.61 -1.56 16 23 C -0.08 -0.85 9.55 -39.57 -0.38 -1.22 16 24 C -0.12 -1.03 9.96 -39.89 -0.40 -1.42 16 25 C -0.10 -0.98 9.94 -39.95 -0.40 -1.38 16 26 C -0.08 -1.04 9.98 -39.40 -0.39 -1.43 16 27 C 0.13 1.95 6.61 -84.89 -0.56 1.39 16 28 N -0.41 -7.69 10.04 -7.66 -0.08 -7.77 16 29 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 30 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 3.00 5.95 -51.93 -0.31 2.69 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.15 2.18 6.73 -52.48 -0.35 1.83 16 36 H 0.04 0.37 7.33 -51.93 -0.38 -0.01 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.36 7.53 -51.93 -0.39 -0.03 16 42 H 0.14 1.23 7.59 -52.49 -0.40 0.83 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -31.74 371.68 -9.53 -41.27 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.27 Total: 1.41 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.96 Total: -5.59 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.23 Total: -38.32 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.65 Total: -20.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.74 -9.53 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810709852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.823 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds