Wall clock time and date at job start Tue Mar 31 2020 15:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 H 1.08995 * 109.47604 * 305.00380 * 3 2 1 5 5 C 1.50698 * 109.46726 * 185.00076 * 3 2 1 6 6 H 1.08003 * 120.00300 * 240.00360 * 5 3 2 7 7 C 1.37884 * 119.99859 * 60.00549 * 5 3 2 8 8 N 1.31510 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99835 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47128 * 89.99854 * 9 7 5 11 11 H 1.48498 * 109.46696 * 209.99874 * 9 7 5 12 12 H 1.48498 * 109.47162 * 329.99954 * 9 7 5 13 13 O 1.45200 * 109.46892 * 65.00482 * 3 2 1 14 14 C 1.34659 * 117.00214 * 269.99415 * 13 3 2 15 15 O 1.21413 * 119.99382 * 0.02562 * 14 13 3 16 16 C 1.48206 * 120.00152 * 179.97438 * 14 13 3 17 17 C 1.39859 * 119.19574 * 180.02562 * 16 14 13 18 18 C 1.38555 * 119.56339 * 180.02562 * 17 16 14 19 19 N 1.38695 * 121.00982 * 179.73145 * 18 17 16 20 20 C 1.46901 * 110.99687 * 299.99915 * 19 18 17 21 21 C 1.46894 * 111.00040 * 63.94815 * 19 18 17 22 22 C 1.41507 * 117.98705 * 359.97438 * 18 17 16 23 23 C 1.40184 * 121.25882 * 179.97438 * 22 18 17 24 24 C 1.36232 * 119.66742 * 180.02562 * 23 22 18 25 25 C 1.39357 * 120.86116 * 0.02562 * 24 23 22 26 26 C 1.36049 * 121.04755 * 0.02562 * 25 24 23 27 27 C 1.40789 * 119.75000 * 359.97438 * 26 25 24 28 28 N 1.32059 * 119.19788 * 0.02621 * 16 14 13 29 29 H 1.09006 * 109.46689 * 299.99808 * 1 2 3 30 30 H 1.08997 * 109.47603 * 59.99255 * 1 2 3 31 31 H 1.08997 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46689 * 240.00192 * 2 1 3 33 33 H 1.08997 * 109.46704 * 120.00597 * 2 1 3 34 34 H 0.97006 * 120.00031 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.22035 * 359.97438 * 17 16 14 36 36 H 1.08995 * 109.47313 * 63.94904 * 20 19 18 37 37 H 1.09001 * 109.47266 * 183.95563 * 20 19 18 38 38 H 1.09000 * 109.46885 * 303.95294 * 20 19 18 39 39 H 1.09003 * 109.47327 * 56.05306 * 21 19 18 40 40 H 1.09006 * 109.47414 * 176.04881 * 21 19 18 41 41 H 1.08998 * 109.47732 * 296.05104 * 21 19 18 42 42 H 1.08002 * 120.16695 * 0.05412 * 23 22 18 43 43 H 1.07996 * 119.57215 * 180.02562 * 24 23 22 44 44 H 1.07994 * 119.47654 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.12066 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8811 -1.3820 10 1 6.5548 -0.3504 -0.7605 11 1 6.3828 0.9223 -2.8175 12 1 6.5570 2.0736 -0.6903 13 8 1.6560 2.0916 1.2408 14 6 0.4690 2.7275 1.2562 15 8 -0.2263 2.7391 0.2610 16 6 0.0110 3.4120 2.4883 17 6 -1.2248 4.0668 2.4858 18 6 -1.6602 4.7097 3.6333 19 7 -2.8780 5.3728 3.6625 20 6 -2.9153 6.4490 2.6632 21 6 -3.9925 4.4358 3.4688 22 6 -0.8224 4.6736 4.7731 23 6 -1.1949 5.3014 5.9699 24 6 -0.3631 5.2468 7.0474 25 6 0.8556 4.5747 6.9762 26 6 1.2495 3.9553 5.8308 27 6 0.4168 3.9898 4.6960 28 7 0.7798 3.3889 3.5618 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8291 -0.0617 -2.9497 35 1 -1.8354 4.0720 1.5949 36 1 -2.8414 6.0198 1.6641 37 1 -3.8529 6.9974 2.7547 38 1 -2.0793 7.1284 2.8295 39 1 -3.9409 3.6492 4.2217 40 1 -4.9376 4.9701 3.5659 41 1 -3.9262 3.9925 2.4752 42 1 -2.1369 5.8254 6.0375 43 1 -0.6518 5.7307 7.9687 44 1 1.4976 4.5451 7.8441 45 1 2.1969 3.4383 5.7924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810709852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:00 Heat of formation + Delta-G solvation = -36.786389 kcal Electronic energy + Delta-G solvation = -27895.780629 eV Core-core repulsion = 24070.925158 eV Total energy + Delta-G solvation = -3824.855471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.37419 -41.23121 -39.06590 -38.09901 -37.50386 -35.54440 -33.42413 -33.33628 -31.96478 -30.79059 -29.39844 -28.63135 -26.85265 -26.14525 -25.04438 -24.16720 -23.00240 -22.14201 -21.37671 -19.46194 -19.19898 -18.71329 -18.34025 -17.75030 -17.27475 -16.72691 -16.43424 -16.28081 -16.08480 -15.70578 -15.24513 -15.08773 -14.97939 -14.86755 -14.80460 -14.28370 -14.05646 -13.45153 -13.37043 -13.34986 -13.19215 -13.07895 -12.87407 -12.74359 -12.72627 -12.62500 -12.58727 -12.51170 -12.17595 -11.87529 -11.73488 -11.45195 -11.40056 -10.89614 -10.78523 -10.56470 -9.96771 -9.82892 -9.23575 -8.30337 -6.47147 -1.01828 -0.52355 0.82248 1.08435 1.38963 1.41820 1.52038 1.72682 2.04614 2.36547 2.52032 2.96747 2.98248 3.00349 3.53107 3.63606 3.70359 3.90186 4.08662 4.17534 4.30716 4.31159 4.31880 4.32754 4.36878 4.37827 4.49099 4.55751 4.56226 4.71106 4.77330 4.91163 4.92122 4.94831 5.01582 5.06643 5.14870 5.22927 5.28043 5.37461 5.46280 5.48271 5.60535 5.65713 5.81999 5.85945 5.96695 6.03441 6.45814 6.60250 6.88787 7.23231 8.76797 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003362 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.419934 B = 8327.485852 C = 9505.204441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.221 3.779 4 H 0.011 0.989 5 C -0.552 4.552 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.269 1.269 13 O -0.342 6.342 14 C 0.503 3.497 15 O -0.525 6.525 16 C 0.121 3.879 17 C -0.169 4.169 18 C 0.161 3.839 19 N -0.500 5.500 20 C 0.021 3.979 21 C 0.022 3.978 22 C -0.078 4.078 23 C -0.084 4.084 24 C -0.097 4.097 25 C -0.080 4.080 26 C -0.112 4.112 27 C 0.105 3.895 28 N -0.449 5.449 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.272 0.728 35 H 0.145 0.855 36 H 0.029 0.971 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.029 0.971 42 H 0.161 0.839 43 H 0.172 0.828 44 H 0.169 0.831 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 11.955 19.502 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.029 0.971 5 C -0.590 4.590 6 H 0.079 0.921 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.193 1.193 13 O -0.257 6.257 14 C 0.347 3.653 15 O -0.415 6.415 16 C -0.030 4.030 17 C -0.192 4.192 18 C 0.057 3.943 19 N -0.220 5.220 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.081 4.081 23 C -0.103 4.103 24 C -0.115 4.115 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.020 4.020 28 N -0.162 5.162 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.163 0.837 36 H 0.048 0.952 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.047 0.953 42 H 0.178 0.822 43 H 0.189 0.811 44 H 0.186 0.814 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.125 11.622 19.466 26.197 hybrid contribution 0.334 -0.408 -1.907 1.979 sum -12.791 11.214 17.559 24.447 Atomic orbital electron populations 1.21712 0.96262 1.00799 0.99886 1.21874 0.94506 0.97855 1.02433 1.20539 0.94876 0.89479 0.78268 0.97095 1.21282 0.90317 1.40344 1.07022 0.92105 1.25785 1.04360 0.93674 0.94129 1.69997 1.37455 1.37701 1.09836 0.85201 0.77503 0.79085 0.77736 1.19052 1.19832 1.19344 1.86646 1.34403 1.62046 1.42583 1.21346 0.80341 0.76285 0.87325 1.90737 1.55956 1.59476 1.35337 1.20009 0.93069 0.98957 0.90933 1.22406 0.95955 0.99540 1.01318 1.19033 0.92161 0.92418 0.90656 1.59518 0.99285 1.12292 1.50946 1.22648 1.04969 0.93105 0.91797 1.22643 0.93386 0.95847 1.00532 1.19077 0.93651 0.99365 0.96009 1.21250 1.01307 0.97532 0.90165 1.21568 0.93013 0.97148 0.99754 1.21416 0.96989 0.94100 0.97482 1.21094 0.99761 1.00980 0.91185 1.19376 0.93997 0.96251 0.92393 1.67902 1.32945 1.16228 0.99113 0.95292 0.94014 0.91613 0.88954 0.93873 0.91854 0.83703 0.95247 0.87224 0.91207 0.91026 0.87263 0.95261 0.82192 0.81051 0.81389 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.03 8.56 71.98 0.62 -5.41 16 2 C -0.13 -6.88 5.49 30.60 0.17 -6.71 16 3 C 0.22 12.91 2.25 29.85 0.07 12.98 16 4 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 5 C -0.55 -33.24 8.90 25.60 0.23 -33.02 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.17 5.29 84.66 0.45 1.62 16 8 N -0.91 -53.38 11.29 21.45 0.24 -53.14 16 9 Si 0.98 44.47 29.54 68.60 2.03 46.50 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 13 O -0.34 -18.74 9.60 -55.68 -0.53 -19.27 16 14 C 0.50 24.57 6.40 70.47 0.45 25.02 16 15 O -0.52 -26.61 13.45 20.12 0.27 -26.34 16 16 C 0.12 4.89 6.74 42.15 0.28 5.18 16 17 C -0.17 -5.51 8.24 22.74 0.19 -5.32 16 18 C 0.16 4.12 4.71 38.94 0.18 4.30 16 19 N -0.50 -9.19 4.19 -743.75 -3.11 -12.30 16 20 C 0.02 0.33 9.29 127.69 1.19 1.51 16 21 C 0.02 0.33 9.33 127.69 1.19 1.52 16 22 C -0.08 -1.98 5.76 -21.13 -0.12 -2.10 16 23 C -0.08 -1.42 9.55 22.28 0.21 -1.20 16 24 C -0.10 -1.19 9.96 22.07 0.22 -0.97 16 25 C -0.08 -1.18 9.94 22.03 0.22 -0.96 16 26 C -0.11 -2.66 9.98 22.38 0.22 -2.44 16 27 C 0.10 3.23 6.61 40.40 0.27 3.50 16 28 N -0.45 -17.75 10.04 -178.14 -1.79 -19.54 16 29 H 0.03 1.32 6.06 -2.38 -0.01 1.31 16 30 H 0.04 2.01 7.79 -2.39 -0.02 1.99 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.09 5.26 5.95 -2.38 -0.01 5.25 16 33 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 35 H 0.15 4.62 6.73 -2.91 -0.02 4.60 16 36 H 0.03 0.53 7.33 -2.39 -0.02 0.52 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 39 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 40 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.03 0.52 7.53 -2.39 -0.02 0.50 16 42 H 0.16 2.06 7.59 -2.91 -0.02 2.03 16 43 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -75.02 371.68 4.13 -70.89 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 1.00 Total: 15.70 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.03 Total: -2.50 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -4.66 Total: -84.98 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.26 Total: -45.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.02 4.13 -70.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810709852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.105 kcal (2) G-P(sol) polarization free energy of solvation -75.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds